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List of works by Lars Juhl Jensen

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Identification of possible adverse drug reactions in clinical notes: The case of glucose-lowering medicines

scientific article (publication date: 2015)
Identification of hyper-rewired genomic stress non-oncogene addiction genes across 15 cancer types

scientific article published on 07 August 2019
From Phosphosites to Kinases

scientific article (publication date: 2016)
Oncogenic Mutations Rewire Signaling Pathways by Switching Protein Recruitment to Phosphotyrosine Sites

scientific article published on 01 October 2019
Heterozygous deletion at the RLN1 locus in a family with testicular germ cell cancer identified by integrating copy number variation data with phenome and interactome information

scientific article published on 22 June 2011
Re-analysis of data and its integration

scientific article (publication date: 12 February 2005)
Predicting Kinase Activity in Angiotensin Receptor Phosphoproteomes Based on Sequence-Motifs and Interactions

scientific article (publication date: 10 April 2014)
Screening mammal biodiversity using DNA from leeches

Genome-wide identification of clusters of predicted microRNA binding sites as microRNA sponge candidates

scientific article published in PLoS ONE
Circular reasoning rather than cyclic expression

scientific article (publication date: 2008)
WebCircRNA: Classifying the Circular RNA Potential of Coding and Noncoding RNA

scientific article published on 6 November 2018
A Guide to Dictionary-Based Text Mining

scientific article published on 01 January 2019
Text mining of 15 million full-text scientific articles

article
Fast genome-wide functional annotation through orthology assignment by eggNOG-mapper

article
Evolution and regulation of cellular periodic processes: a role for paralogues

scientific article (publication date: 19 February 2010)
Search Databases and Statistics: Pitfalls and Best Practices in Phosphoproteomics

scientific article published on January 1, 2016
CoCoScore: context-aware co-occurrence scoring for text mining applications using distant supervision

scientific article published on 01 January 2020
TIN-X: target importance and novelty explorer

scientific article published on 07 April 2017
Erratum to: Dose-Specific Adverse Drug Reaction Identification in Electronic Patient Records: Temporal Data Mining in an Inpatient Psychiatric Population

scientific article (publication date: 9 April 2014)
The STRING database in 2021: customizable protein-protein networks, and functional characterization of user-uploaded gene/measurement sets

scientific article published on 25 November 2020
Reflect: A practical approach to web semantics

scientific article (publication date: July 2010)
Linked annotations: a middle ground for manual curation of biomedical databases and text corpora

scientific article published on 6 August 2015
Quality analysis and integration of large-scale molecular data sets

scientific article (publication date: April 2004)
Sharing annotations better: RESTful Open Annotation

scientific article (publication date: 2015)
Orphan protein function and its relation to glycosylation.

scientific article
Linking glycemic dysregulation in diabetes to symptoms, comorbidities, and genetics through EHR data mining

scientific article published on 10 December 2019
SnapShot: S-Phase Entry and Exit

scientific article published on 01 October 2019
One tagger, many uses - Illustrating the power of ontologies in dictionary-based named entity recognition

scientific article (publication date: 2 August 2016)
ProtFus: A Comprehensive Method Characterizing Protein-Protein Interactions of Fusion Proteins

scientific article published on 22 August 2019
TISSUES 2.0: an integrative web resource on mammalian tissue expression

scientific article published on 16 March 2018
Structure-based discovery of novel US28 small molecule ligands with different modes of action

scientific article published on 29 August 2016
An Integrative Approach to Virus-Host Protein-Protein Interactions

scientific article published on 01 January 2018
The Atlas visualization of genomewide information

scientific article (publication date: 2002)
Reply to 'Mining electronic health records: an additional perspective'

scientific article (publication date: 18 December 2012)
Comparative Genomics of Four Pseudomonas Species

scientific article (publication date: 2004)
STRING-ing together protein complexes: corpus and methods for extracting physical protein interactions from the biomedical literature

Quantitative proteome comparison of human hearts with those of model organisms

scientific article published on 19 April 2021
Comprehensive comparison of large-scale tissue expression datasets

Streamlined analysis of drug targets by proteome integral solubility alteration indicates organ-specific engagement

scientific article published on 16 October 2024
Comprehensive comparison of large-scale tissue expression datasets

scientific article (publication date: 10 November 2014)
Systems biology: in the broadest sense of the word

scientific article (publication date: April 2005)
Palaeoproteomic Profiling of Conservation Layers on a 14th Century Italian Wall Painting

scientific article published on 26 April 2018
Linked annotations: a middle ground for manual curation of biomedical databases and text corpora

scientific article (publication date: 23 January 2015) from BioRxiv
Comparing 22 Popular Phosphoproteomics Pipelines for Peptide Identification and Site Localization

scientific article published on 04 February 2020
Cell Cycle Data Analysis

scientific article (publication date: 2013)
Creation and evaluation of a dictionary-based tagger for virus species and proteins

Yield and Integrity of RNA from Brain Samples are Largely Unaffected by Pre-analytical Procedures

scientific article published on 29 November 2020
Improved metagenome binning and assembly using deep variational autoencoders

scientific article
Cytoscape stringApp: Network analysis and visualization of proteomics data

scholarly article published 11 October 2018
Alcoholic liver disease: A registry view on comorbidities and disease prediction

scientific article published on 22 September 2020

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