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Authors whose works are in public domain in at least one jurisdiction

List of works by Lars Juhl Jensen

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RegulaTome: a corpus of typed, directed, and signed relations between biomedical entities in the scientific literature

Protein annotation in the era of personal genomics

scientific article (publication date: June 2010)
FAVA: high-quality functional association networks inferred from scRNA-seq and proteomics data

scientific article published in 2024
Accurate plasmid reconstruction from metagenomics data using assembly-alignment graphs and contrastive learning

Transcriptome analysis in patients with temporal lobe epilepsy

scientific article published on 01 October 2019
Improving Peptide-Spectrum Matching by Fragmentation Prediction Using Hidden Markov Models

scientific article published on 22 May 2019
A knowledge graph to interpret clinical proteomics data

TCRD and Pharos 2021: mining the human proteome for disease biology

scientific article published on 06 November 2020
Visualize omics data on networks with Omics Visualizer, a Cytoscape App

scientific article published on 28 February 2020
Darkness in the Human Gene and Protein Function Space: Widely Modest or Absent Illumination by the Life Science Literature and the Trend for Fewer Protein Function Discoveries Since 2000

scientific article published on 30 October 2018
HOODS: finding context-specific neighborhoods of proteins, chemicals and diseases

scientific article (publication date: 30 June 2015)
Comprehensive comparison of large-scale tissue expression datasets

STRING-ing together protein complexes: corpus and methods for extracting physical protein interactions from the biomedical literature

Real-time tagging of biomedical entities

scientific article (publication date: 30 September 2016)
EXTRACT 2.0: text-mining-assisted interactive annotation of biomedical named entities and ontology terms

scientific article (publication date: 23 February 2017)
OnTheFly 2.0: A tool for automatic annotation of files and biological information extraction

scientific article (publication date: November 2013)

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