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List of works by Lars Juhl Jensen

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TIMP-1 Increases Expression and Phosphorylation of Proteins Associated with Drug Resistance in Breast Cancer Cells

scientific article (publication date: 6 September 2013)
RAIN: RNA-protein Association and Interaction Networks

scientific article published on 10 January 2017
Overview of the interactive task in BioCreative V

scientific article (publication date: 2016)
Extraction of transcript diversity from scientific literature

scientific article
Enhanced function annotations for Drosophila serine proteases: A case study for systematic annotation of multi-member gene families

scientific article (publication date: 2008)
Systems-wide Analysis of Serine ADP-Ribosylation Reveals Widespread Occurrence and Site-Specific Overlap with Phosphorylation

scientific article published on 01 August 2018
Functionality of System Components: Conservation of Protein Function in Protein Feature Space

scientific article (publication date: November 2003)
TISSUES 2.0: an integrative web resource on mammalian tissue expression

scientific article published on 12 February 2018
Protein-Protein Interaction Databases

scientific article (publication date: 2015)
Accurate Quantification of Site-specific Acetylation Stoichiometry Reveals the Impact of Sirtuin Deacetylase CobB on the E. coli Acetylome

scientific article published on 2 March 2017
Martini: using literature keywords to compare gene sets

scientific article (publication date: 24 October 2009)
miRandola 2017: a curated knowledge base of non-invasive biomarkers

scientific article published on 25 September 2017
Dose-Specific Adverse Drug Reaction Identification in Electronic Patient Records: Temporal Data Mining in an Inpatient Psychiatric Population

scientific article (publication date: 15 March 2014)
Secretome Analysis of Lipid-Induced Insulin Resistance in Skeletal Muscle Cells by a Combined Experimental and Bioinformatics Workflow

scientific article (publication date: 6 November 2015)
Evolution of Cell Cycle Control: Same Molecular Machines, Different Regulation

scientific article (publication date: August 2007)
Metaproteomics of saliva identifies human protein markers specific for individuals with periodontitis and dental caries compared to orally healthy controls

scientific article published on 14 September 2016
Are graph databases ready for bioinformatics?

scientific article (publication date: 17 October 2013)
A comprehensive and quantitative comparison of text-mining in 15 million full-text articles versus their corresponding abstracts

scientific article published on 15 February 2018
Avoiding abundance bias in the functional annotation of posttranslationally modified proteins

scientific article (publication date: 29 October 2015)
The rise and fall of supervised machine learning techniques

scientific article (publication date: 17 November 2011)
Protein feature based identification of cell cycle regulated proteins in yeast

scientific article published in June 2003
EXTRACT: interactive extraction of environment metadata and term suggestion for metagenomic sample annotation

scientific article (publication date: 2016)
Site-specific characterization of endogenous SUMOylation across species and organs

scientific article published on 25 June 2018
Viruses.STRING: A Virus-Host Protein-Protein Interaction Database

scholarly article by Helen Victoria Cook published in September 2018
Multiple independent analyses reveal only transcription factors as an enriched functional class associated with microRNAs

scientific article (publication date: 23 July 2012)
Discrepancies in listed adverse drug reactions in pharmaceutical product information supplied by the regulatory authorities in Denmark and the USA

scientific article (publication date: 22 April 2014)
Suppression of Water as a Nucleophile in Candida antarctica Lipase B Catalysis

scientific article (publication date: 16 March 2010)
ENVIRONMENTS and EOL: identification of Environment Ontology terms in text and the annotation of the Encyclopedia of Life

scientific article (publication date: 24 January 2015)
Palaeoproteomic Profiling of Conservation Layers on a 14th Century Italian Wall Painting.

scientific article published on 30 March 2018
Drug target ontology to classify and integrate drug discovery data

scientific article
Analysis of two large functionally uncharacterized regions in the Methanopyrus kandleri AV19 genome

scientific article
Prediction of novel archaeal enzymes from sequence-derived features

scientific article (publication date: 13 April 2009)
Scoring functions for computational algorithms applicable to the design of spiked oligonucleotides

scientific article published in February 1998
Seqenv: linking sequences to environments through text mining

scientific article
Transcriptional regulation is a major controller of cell cycle transition dynamics

scientific article (publication date: 2012)
Ten simple rules for getting help from online scientific communities

scientific article
Unexplored therapeutic opportunities in the human genome

scientific article published on 23 March 2018
Quantitative metaproteomics of medieval dental calculus reveals individual oral health status

scientific article published in Nature Communications
Large-scale extraction of gene regulation for model organisms in an ontological context.

scientific article published on January 2005
Analysis of Predicted Host-Parasite Interactomes Reveals Commonalities and Specificities Related to Parasitic Lifestyle and Tissues Tropism

scientific article published on 13 February 2019
Microblogging the ISMB: A New Approach to Conference

scientific article (publication date: 30 January 2009)
LocText: relation extraction of protein localizations to assist database curation

scientific article published on 17 January 2018
Visualization of pathogenicity regions in bacteria

scientific article published in January 2000
Specifying RNA-Binding Regions in Proteins by Peptide Cross-Linking and Affinity Purification

scientific article
miRNAs in human subcutaneous adipose tissue: Effects of weight loss induced by hypocaloric diet and exercise.

scientific article published on 3 February 2017
DoReMi: context-based prioritization of linear motif matches

scientific article (publication date: 20 March 2014)
Design, implementation, and operation of a rapid, robust named entity recognition web service

scientific article published on 08 March 2019
Hepatic oxidative stress, genotoxicity and vascular dysfunction in lean or obese Zucker rats

scientific article
Impact of microRNA-130a on the neutrophil proteome

scientific article (publication date: 25 November 2015)
Inferring disease-associated long non-coding RNAs using genome-wide tissue expression profiles

article

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