List of works - Lars Juhl Jensen

Quantifying environmental adaptation of metabolic pathways in metagenomics

scientific article

Systematic identification of proteins that elicit drug side effects

scientific article (publication date: 28 April 2014)

Systematic association of genes to phenotypes by genome and literature mining

scientific article

A systematic screen for protein-lipid interactions in Saccharomyces cerevisiae

scientific article

Temporal disease trajectories condensed from population-wide registry data covering 6.2 million patients

scientific article (publication date: 24 June 2014)

Origin of replication in circular prokaryotic chromosomes

scientific article

Protein-driven inference of miRNA-disease associations

scientific article (publication date: 21 November 2013)

Site-specific mapping of the human SUMO proteome reveals co-modification with phosphorylation

scientific article published on 23 January 2017

Standardized benchmarking in the quest for orthologs

scientific article (publication date: 4 April 2016)

Proteome-wide analysis of arginine monomethylation reveals widespread occurrence in human cells

scientific article (publication date: 30 August 2016)

Toward molecular trait-based ecology through integration of biogeochemical, geographical and metagenomic data

scientific article (publication date: 16 April 2014)

eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses

scientific article published on 01 January 2019

Specific CLK Inhibitors from a Novel Chemotype for Regulation of Alternative Splicing

scientific article

Drug-induced regulation of target expression

scientific article

Large-scale prediction of drug-target relationships

scientific article (publication date: 20 February 2008)

BioStar: An Online Question & Answer Resource for the Bioinformatics Community

scientific article (publication date: 27 October 2011)

Proteomic Analysis of a Pleistocene Mammoth Femur Reveals More than One Hundred Ancient Bone Proteins

scientific article (publication date: 3 February 2012)

Cyclebase 3.0: a multi-organism database on cell-cycle regulation and phenotypes

scientific article (publication date: 5 November 2014)

Pharos: Collating protein information to shed light on the druggable genome

scientific article

Assessing systems properties of yeast mitochondria through an interaction map of the organelle

scientific article

High-resolution transcription atlas of the mitotic cell cycle in budding yeast

scientific article (publication date: 2010)

Extraction of regulatory gene/protein networks from Medline

scientific article (publication date: 26 July 2005)

Screening mammal biodiversity using DNA from leeches

scientific article published on 01 April 2012

Identification of Novel Type 1 Diabetes Candidate Genes by Integrating Genome-Wide Association Data, Protein-Protein Interactions, and Human Pancreatic Islet Gene Expression

scientific article (publication date: 16 February 2012)

Genes adopt non-optimal codon usage to generate cell cycle-dependent oscillations in protein levels

scientific article (publication date: 28 February 2012)

Unexplored therapeutic opportunities in the human genome.

scientific article published on 23 February 2018

Reflect: augmented browsing for the life scientist

scientific article (publication date: June 2009)

Identification of tightly regulated groups of genes during Drosophila melanogaster embryogenesis

scientific article (publication date: 16 January 2007)

Quantitative assessment of protein function prediction from metagenomics shotgun sequences

scientific article (publication date: 23 August 2007)

Automatic discovery of regulatory patterns in promoter regions based on whole cell expression data and functional annotation

scientific article (publication date: April 2000)

Structural analysis of DNA sequence: evidence for lateral gene transfer in Thermotoga maritima

scientific article (publication date: February 2000)

Cytoscape StringApp: Network Analysis and Visualization of Proteomics Data

scientific article published on 19 November 2018

The more the merrier: comparative analysis of microarray studies on cell cycle-regulated genes in fission yeast

scientific article (publication date: March 2006)

Comprehensive comparison of large-scale tissue expression datasets

scientific article (publication date: 30 June 2015)

Cyclebase.org: version 2.0, an updated comprehensive, multi-species repository of cell cycle experiments and derived analysis results

scientific article (publication date: 24 November 2009)

Text mining for biology - the way forward: opinions from leading scientists

scientific article (publication date: 2008)

The SPECIES and ORGANISMS Resources for Fast and Accurate Identification of Taxonomic Names in Text

scientific article (publication date: 18 June 2013)

Spore number control and breeding inSaccharomyces cerevisiae

scientific article (publication date: 14 November 2005)

Sequence-based feature prediction and annotation of proteins

scientific article (publication date: 2009)

Pre-Clovis Mastodon Hunting 13,800 Years Ago at the Manis Site, Washington

scientific article (publication date: 20 October 2011)

SVD-phy: improved prediction of protein functional associations through singular value decomposition of phylogenetic profiles

scientific article (publication date: 26 November 2015)

Proteomic Analysis of Arginine Methylation Sites in Human Cells Reveals Dynamic Regulation During Transcriptional Arrest

scientific article (publication date: 21 February 2014)

Temporal proteomics of NGF-TrkA signaling identifies an inhibitory role for the E3 ligase Cbl-b in neuroblastoma cell differentiation

scientific article (publication date: 28 April 2015)

Cell cycle regulation by feed-forward loops coupling transcription and phosphorylation

scientific article (publication date: 20 January 2009)

Three views of microbial genomes

scientific article (publication date: November 1999)

A comparison of protein kinases inhibitor screening methods using both enzymatic activity and binding affinity determination

scientific article (publication date: 2014)

Ontologies in Quantitative Biology: A Basis for Comparison, Integration, and Discovery

scientific article (publication date: 25 May 2010)

Dictionary construction and identification of possible adverse drug events in Danish clinical narrative text

scientific article (publication date: September 2013)

Predicting biological networks from genomic data

scientific article (publication date: 21 February 2008)

Phosphoproteomics of Primary Cells Reveals Druggable Kinase Signatures in Ovarian Cancer

scientific article published on March 2017

List of works by Lars Juhl Jensen

Quantifying environmental adaptation of metabolic pathways in metagenomics

Systematic identification of proteins that elicit drug side effects

Systematic association of genes to phenotypes by genome and literature mining

A systematic screen for protein-lipid interactions in Saccharomyces cerevisiae

Temporal disease trajectories condensed from population-wide registry data covering 6.2 million patients

Origin of replication in circular prokaryotic chromosomes

Protein-driven inference of miRNA-disease associations

Site-specific mapping of the human SUMO proteome reveals co-modification with phosphorylation

Standardized benchmarking in the quest for orthologs

Proteome-wide analysis of arginine monomethylation reveals widespread occurrence in human cells

Toward molecular trait-based ecology through integration of biogeochemical, geographical and metagenomic data

eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses

Specific CLK Inhibitors from a Novel Chemotype for Regulation of Alternative Splicing

Drug-induced regulation of target expression

Large-scale prediction of drug-target relationships

BioStar: An Online Question & Answer Resource for the Bioinformatics Community

Proteomic Analysis of a Pleistocene Mammoth Femur Reveals More than One Hundred Ancient Bone Proteins

Cyclebase 3.0: a multi-organism database on cell-cycle regulation and phenotypes

Pharos: Collating protein information to shed light on the druggable genome

Assessing systems properties of yeast mitochondria through an interaction map of the organelle

High-resolution transcription atlas of the mitotic cell cycle in budding yeast

Extraction of regulatory gene/protein networks from Medline

Screening mammal biodiversity using DNA from leeches

Identification of Novel Type 1 Diabetes Candidate Genes by Integrating Genome-Wide Association Data, Protein-Protein Interactions, and Human Pancreatic Islet Gene Expression

Genes adopt non-optimal codon usage to generate cell cycle-dependent oscillations in protein levels

Unexplored therapeutic opportunities in the human genome.

Reflect: augmented browsing for the life scientist

Identification of tightly regulated groups of genes during Drosophila melanogaster embryogenesis

Quantitative assessment of protein function prediction from metagenomics shotgun sequences

Automatic discovery of regulatory patterns in promoter regions based on whole cell expression data and functional annotation

Structural analysis of DNA sequence: evidence for lateral gene transfer in Thermotoga maritima

Cytoscape StringApp: Network Analysis and Visualization of Proteomics Data

The more the merrier: comparative analysis of microarray studies on cell cycle-regulated genes in fission yeast

Comprehensive comparison of large-scale tissue expression datasets

Cyclebase.org: version 2.0, an updated comprehensive, multi-species repository of cell cycle experiments and derived analysis results

Text mining for biology - the way forward: opinions from leading scientists

The SPECIES and ORGANISMS Resources for Fast and Accurate Identification of Taxonomic Names in Text

Spore number control and breeding inSaccharomyces cerevisiae

Sequence-based feature prediction and annotation of proteins

Pre-Clovis Mastodon Hunting 13,800 Years Ago at the Manis Site, Washington

SVD-phy: improved prediction of protein functional associations through singular value decomposition of phylogenetic profiles

Proteomic Analysis of Arginine Methylation Sites in Human Cells Reveals Dynamic Regulation During Transcriptional Arrest

Temporal proteomics of NGF-TrkA signaling identifies an inhibitory role for the E3 ligase Cbl-b in neuroblastoma cell differentiation

Cell cycle regulation by feed-forward loops coupling transcription and phosphorylation

Three views of microbial genomes

A comparison of protein kinases inhibitor screening methods using both enzymatic activity and binding affinity determination

Ontologies in Quantitative Biology: A Basis for Comparison, Integration, and Discovery

Dictionary construction and identification of possible adverse drug events in Danish clinical narrative text

Predicting biological networks from genomic data

Phosphoproteomics of Primary Cells Reveals Druggable Kinase Signatures in Ovarian Cancer