List of works - Alexander Erban

A new synthetic biology approach allows transfer of an entire metabolic pathway from a medicinal plant to a biomass crop

scientific article

A plastid-localized glycogen synthase kinase 3 modulates stress tolerance and carbohydrate metabolism

scientific article published on 22 February 2007

A rapid approach for phenotype-screening and database independent detection of cSNP/protein polymorphism using mass accuracy precursor alignment.

scientific article published in October 2008

Acquisition of Volatile Compounds by Gas Chromatography-Mass Spectrometry (GC-MS).

scientific article published in January 2018

Arabidopsis thaliana glyoxalase 2-1 is required during abiotic stress but is not essential under normal plant growth

scientific article (publication date: 2014)

Aroma and quality of breads baked from old and modern wheat varieties and their prediction from genomic and flour-based metabolite profiles

scientific article published on 09 December 2019

Both cold and sub-zero acclimation induce cell wall modification and changes in the extracellular proteome in Arabidopsis thaliana

scientific article published on 19 February 2019

Carbon flux through photosynthesis and central carbon metabolism show distinct patterns between algae, C3 and C4 plants

scientific article published on 23 December 2021

Cell wall modification by the xyloglucan endotransglucosylase/hydrolase XTH19 influences freezing tolerance after cold and sub-zero acclimation

scientific article published on 14 November 2020

Characterization of leaf apoplastic peroxidases and metabolites in Vigna unguiculata in response to toxic manganese supply and silicon

scientific article published on 13 March 2009

Characterization of the Wheat Leaf Metabolome during Grain Filling and under Varied N-Supply

scientific article published on 29 November 2017

Comparative Metabolomics and Molecular Phylogenetics of Melon (Cucumis melo, Cucurbitaceae) Biodiversity

scientific article published on 24 March 2020

Comparative functional genomics of salt stress in related model and cultivated plants identifies and overcomes limitations to translational genomics

scientific article

Comparative ionomics and metabolomics in extremophile and glycophytic Lotus species under salt stress challenge the metabolic pre-adaptation hypothesis ⬇️

scientific article published on 21 January 2011

Comparative metabolomics of drought acclimation in model and forage legumes

scientific article

Comprehensive Metabolomics Studies of Plant Developmental Senescence

scientific article published in January 2018

Comprehensive dissection of spatiotemporal metabolic shifts in primary, secondary, and lipid metabolism during developmental senescence in Arabidopsis

scientific article published on 21 May 2013

Consequences of induced brassinosteroid deficiency in Arabidopsis leaves

scientific article

Cysteine and Methionine Biosynthetic Enzymes Have Distinct Effects on Seed Nutritional Quality and on Molecular Phenotypes Associated With Accumulation of a Methionine-Rich Seed Storage Protein in Rice

scientific article published on 22 July 2020

Cytoskeletal Components Define Protein Location to Membrane Microdomains

scientific article published on 19 June 2015

Discovery of food identity markers by metabolomics and machine learning technology

scientific article published on 04 July 2019

Dissecting rice polyamine metabolism under controlled long-term drought stress

scientific article

Downregulation of cinnamoyl-coenzyme A reductase in poplar: multiple-level phenotyping reveals effects on cell wall polymer metabolism and structure

scientific article published on 16 November 2007

Extensive metabolic cross-talk in melon fruit revealed by spatial and developmental combinatorial metabolomics.

scientific article published on 28 January 2011

Functional associations between the metabolome and manganese tolerance in Vigna unguiculata

scientific article published on 20 September 2011

Functional specialization of one copy of glutamine phosphoribosyl pyrophosphate amidotransferase in ureide production from symbiotically fixed nitrogen in Phaseolus vulgaris

scientific article published on 23 March 2016

Global Metabolic Profiling of Arabidopsis Polyamine Oxidase 4 (AtPAO4) Loss-of-Function Mutants Exhibiting Delayed Dark-Induced Senescence.

scientific article published on 18 February 2016

Global changes in the transcript and metabolic profiles during symbiotic nitrogen fixation in phosphorus-stressed common bean plants

scientific article published on 15 September 2009

Global mapping of protein-metabolite interactions in Saccharomyces cerevisiae reveals that Ser-Leu dipeptide regulates phosphoglycerate kinase activity

scientific article published on 10 February 2021

High night temperature strongly impacts TCA cycle, amino acid and polyamine biosynthetic pathways in rice in a sensitivity-dependent manner

scientific article

Highly Resolved Systems Biology to Dissect the Etioplast-to-Chloroplast Transition in Tobacco Leaves

scientific article published on 12 March 2019

Hybrid weakness controlled by the dosage-dependent lethal (DL) gene system in common bean (Phaseolus vulgaris) is caused by a shoot-derived inhibitory signal leading to salicylic acid-associated root death

scientific article published in November 2007

Identification of Arabidopsis mutants impaired in the systemic regulation of root nitrate uptake by the nitrogen status of the plant

scientific article published on 6 May 2010

Identification of primary and secondary metabolites with phosphorus status-dependent abundance inArabidopsis, and of the transcription factor PHR1 as a major regulator of metabolic changes during phosphorus limitation

scientific article published on 04 July 2014

Imbalanced Regulation of Fungal Nutrient Transports According to Phosphate Availability in a Symbiocosm Formed by Poplar, Sorghum, and Rhizophagus irregularis

scientific article published on 12 December 2019

Impact of seasonal warming on overwintering and spring phenology of blackcurrant

article

Increasing abscisic acid levels by immunomodulation in barley grains induces precocious maturation without changing grain composition

scientific article

Increasing sucrose uptake capacity of wheat grains stimulates storage protein synthesis

scientific article published on 14 December 2009

Integrated analysis of rice transcriptomic and metabolomic responses to elevated night temperatures identifies sensitivity- and tolerance-related profiles

scientific article

Integrative "omic" analysis reveals distinctive cold responses in leaves and roots of strawberry, Fragaria × ananassa 'Korona'

scientific article

Integrative functional genomics of salt acclimatization in the model legume Lotus japonicus ⬇️

scientific article published on 29 November 2007

Inter-laboratory reproducibility of fast gas chromatography-electron impact-time of flight mass spectrometry (GC-EI-TOF/MS) based plant metabolomics.

scientific article

Ion-dependent metabolic responses of Vicia faba L. to salt stress

scientific article published on 09 August 2018

Isolation and characterization of three new PGPR and their effects on the growth of Arabidopsis and Datura plants

article

Light modulated activity of root alkaline/neutral invertase involves the interaction with 14-3-3 proteins

scientific article

Mass appeal: metabolite identification in mass spectrometry-focused untargeted metabolomics

scientific article (publication date: 26 May 2012)

Metabolic and transcriptional transitions in barley glumes reveal a role as transitory resource buffers during endosperm filling

scientific article

Metabolic and transcriptomic signatures of rice floral organs reveal sugar starvation as a factor in reproductive failure under heat and drought stress

scientific article

Metabolic contribution to salt stress in two maize hybrids with contrasting resistance

scientific article published on 15 January 2015

Metabolic labeling of plant cell cultures with K(15)NO3 as a tool for quantitative analysis of proteins and metabolites

scientific article

Metabolic profiling of Arabidopsis thaliana epidermal cells

scientific article

Metabolic profiling of ‘Conference’ pears under low oxygen stress

Metabolic profiling reveals local and systemic responses of host plants to nematode parasitism

scientific article

Metabolic responses of rice cultivars with different tolerance to combined drought and heat stress under field conditions

article

Metabolic responses of rice source and sink organs during recovery from combined drought and heat stress in the field

scientific article published on 01 August 2019

Metabolite Profiling Reveals Sensitivity-Dependent Metabolic Shifts in Rice (Oryza Sativa L.) Cultivars under High Night Temperature Stress

Metabolite and transcript markers for the prediction of potato drought tolerance.

scientific article published on 20 September 2017

Metabolite profiling reveals novel multi-level cold responses in the diploid model Fragaria vesca (woodland strawberry).

scientific article

Metabolome analysis: the potential of in vivo labeling with stable isotopes for metabolite profiling

scientific article

Metabolomic linkage reveals functional interaction between glucose-dependent insulinotropic polypeptide and ghrelin in humans

scientific article published on 17 May 2011

Metabolomics Identifies a Biomarker Revealing In Vivo Loss of Functional β-Cell Mass Before Diabetes Onset

scientific article published on 19 September 2019

Mining for robust transcriptional and metabolic responses to long-term salt stress: a case study on the model legume Lotus japonicus

scientific article published on 23 September 2009

Molecular signatures associated with increased freezing tolerance due to low temperature memory in Arabidopsis

scientific article published on 28 January 2019

Multi-omics reveals mechanisms of total resistance to extreme illumination of a desert alga

scientific article published on 27 July 2020

Multiplexed Profiling and Data Processing Methods to Identify Temperature-Regulated Primary Metabolites Using Gas Chromatography Coupled to Mass Spectrometry

scientific article published on 01 January 2020

NLR mutations suppressing immune hybrid incompatibility and their effects on disease resistance.

scientific article

Natural Variation in Freezing Tolerance and Cold Acclimation Response in Arabidopsis thaliana and Related Species

scientific article published on 01 January 2018

Nonsupervised Construction and Application of Mass Spectral and Retention Time Index Libraries From Time-of-Flight Gas Chromatography-Mass Spectrometry Metabolite Profiles

Nonsupervised construction and application of mass spectral and retention time index libraries from time-of-flight gas chromatography-mass spectrometry metabolite profiles

scientific article

Opposite fates of the purine metabolite allantoin under water and nitrogen limitations in bread wheat

scientific article published on 05 February 2019

Overexpression of sinapine esterase BnSCE3 in oilseed rape seeds triggers global changes in seed metabolism

scientific article published on 19 January 2011

Phosphorus stress in common bean: root transcript and metabolic responses

scientific article published on 20 April 2007

Physiologic and metabolic responses of wheat seedlings to elevated and super-elevated carbon dioxide

article

Plant metabolomics and its potential for systems biology research background concepts, technology, and methodology

scientific article published on January 2011

Plant temperature acclimation and growth rely on cytosolic ribosome biogenesis factor homologs.

scientific article

Predicting Arabidopsis freezing tolerance and heterosis in freezing tolerance from metabolite composition

scientific article published on 21 December 2009

Primed primary metabolism in systemic leaves: a functional systems analysis

scientific article published on 9 January 2018

Profiling methods to identify cold-regulated primary metabolites using gas chromatography coupled to mass spectrometry

scientific article published in January 2014

Rapid transcriptional and metabolic regulation of the deacclimation process in cold acclimated Arabidopsis thaliana

scientific article published on 16 September 2017

Rationales and approaches for studying metabolism in eukaryotic microalgae

scientific article

Relationship between grazing lamb growth rate and blood plasma analytes as profiled by gas chromatography with time-of-flight mass spectrometry (GC-TOF/MS).

scientific article published in January 2010

Retention index thresholds for compound matching in GC-MS metabolite profiling

scientific article

Salt stress responses in a geographically diverse collection of Eutrema/Thellungiella spp. accessions

article

Search for transcriptional and metabolic markers of grape pre-ripening and ripening and insights into specific aroma development in three Portuguese cultivars

scientific article

Season Affects Yield and Metabolic Profiles of Rice (Oryza sativa) under High Night Temperature Stress in the Field

scientific article published on 30 April 2020

Selective induction and subcellular distribution of ACONITASE 3 reveal the importance of cytosolic citrate metabolism during lipid mobilization in Arabidopsis

scientific article

Sugar Starvation of Rice Anthers is a Factor in Reproductive Failure under Heat and Drought Stress, as shown by Metabolite and Transcript Profiling

article by Ellen Zuther et al published 2015 in Procedia environmental sciences

Symbiosis dependent accumulation of primary metabolites in arbuscule-containing cells

scientific article published on 30 September 2015

Systemic Potato virus X infection induces defence gene expression and accumulation of β-phenylethylamine-alkaloids in potato

article

Systems Analysis of the Response of Photosynthesis, Metabolism, and Growth to an Increase in Irradiance in the Photosynthetic Model Organism Chlamydomonas reinhardtii

scholarly article by Tabea Mettler et al published June 2014 in The Plant Cell

TagFinder for the quantitative analysis of gas chromatography--mass spectrometry (GC-MS)-based metabolite profiling experiments

scientific article published on 19 January 2008

TagFinder: preprocessing software for the fingerprinting and the profiling of gas chromatography-mass spectrometry based metabolome analyses

scientific article published in January 2012

The Impact of Metabolic Scion–Rootstock Interactions in Different Grapevine Tissues and Phloem Exudates

scientific article published on 31 May 2021

The drought response of potato reference cultivars with contrasting tolerance

scientific article

The fungal endophyte Fusarium solani provokes differential effects on the fitness of two Lotus species

scientific article published on 17 September 2019

The iron-stress activated RNA 1 (IsaR1) coordinates osmotic acclimation and iron starvation responses in the cyanobacterium Synechocystis sp. PCC 6803.

scientific article published on 22 February 2018

Time course effects on primary metabolism of potato (Solanum tuberosum) tuber tissue after mechanical impact

article by Nadine Strehmel et al published May 2010 in Postharvest Biology and Technology

Transcript and metabolite profiling of the adaptive response to mild decreases in oxygen concentration in the roots of arabidopsis plants

scientific article published on 25 July 2008

Transcriptome and metabolome analyses provide insights into root and root-released organic anion responses to phosphorus deficiency in oat

scientific article published on 01 June 2018

Transcriptome and metabolome reprogramming in Vitis vinifera cv. Trincadeira berries upon infection with Botrytis cinerea

scientific article published on 11 February 2015

Underground isoleucine biosynthesis pathways in E. coli

scientific article published on 24 August 2020

Unravelling the Metabolic and Hormonal Machinery During Key Steps of Somatic Embryogenesis: A Case Study in Coffee

scientific article published on 20 September 2019

Untargeted metabolomics as a hypothesis-generation tool in plant protection product discovery: Highlighting the potential of trehalose and glycerol metabolism of fungal conidiospores as novel targets

scientific article published on 29 June 2020

List of works by Alexander Erban

A new synthetic biology approach allows transfer of an entire metabolic pathway from a medicinal plant to a biomass crop

A plastid-localized glycogen synthase kinase 3 modulates stress tolerance and carbohydrate metabolism

A rapid approach for phenotype-screening and database independent detection of cSNP/protein polymorphism using mass accuracy precursor alignment.

Acquisition of Volatile Compounds by Gas Chromatography-Mass Spectrometry (GC-MS).

Arabidopsis thaliana glyoxalase 2-1 is required during abiotic stress but is not essential under normal plant growth

Aroma and quality of breads baked from old and modern wheat varieties and their prediction from genomic and flour-based metabolite profiles

Both cold and sub-zero acclimation induce cell wall modification and changes in the extracellular proteome in Arabidopsis thaliana

Carbon flux through photosynthesis and central carbon metabolism show distinct patterns between algae, C3 and C4 plants

Cell wall modification by the xyloglucan endotransglucosylase/hydrolase XTH19 influences freezing tolerance after cold and sub-zero acclimation

Characterization of leaf apoplastic peroxidases and metabolites in Vigna unguiculata in response to toxic manganese supply and silicon

Characterization of the Wheat Leaf Metabolome during Grain Filling and under Varied N-Supply

Comparative Metabolomics and Molecular Phylogenetics of Melon (Cucumis melo, Cucurbitaceae) Biodiversity

Comparative functional genomics of salt stress in related model and cultivated plants identifies and overcomes limitations to translational genomics

Comparative ionomics and metabolomics in extremophile and glycophytic Lotus species under salt stress challenge the metabolic pre-adaptation hypothesis ⬇️

Comparative metabolomics of drought acclimation in model and forage legumes

Comprehensive Metabolomics Studies of Plant Developmental Senescence

Comprehensive dissection of spatiotemporal metabolic shifts in primary, secondary, and lipid metabolism during developmental senescence in Arabidopsis

Consequences of induced brassinosteroid deficiency in Arabidopsis leaves

Cysteine and Methionine Biosynthetic Enzymes Have Distinct Effects on Seed Nutritional Quality and on Molecular Phenotypes Associated With Accumulation of a Methionine-Rich Seed Storage Protein in Rice

Cytoskeletal Components Define Protein Location to Membrane Microdomains

Discovery of food identity markers by metabolomics and machine learning technology

Dissecting rice polyamine metabolism under controlled long-term drought stress

Downregulation of cinnamoyl-coenzyme A reductase in poplar: multiple-level phenotyping reveals effects on cell wall polymer metabolism and structure

Extensive metabolic cross-talk in melon fruit revealed by spatial and developmental combinatorial metabolomics.

Functional associations between the metabolome and manganese tolerance in Vigna unguiculata

Functional specialization of one copy of glutamine phosphoribosyl pyrophosphate amidotransferase in ureide production from symbiotically fixed nitrogen in Phaseolus vulgaris

Global Metabolic Profiling of Arabidopsis Polyamine Oxidase 4 (AtPAO4) Loss-of-Function Mutants Exhibiting Delayed Dark-Induced Senescence.

Global changes in the transcript and metabolic profiles during symbiotic nitrogen fixation in phosphorus-stressed common bean plants

Global mapping of protein-metabolite interactions in Saccharomyces cerevisiae reveals that Ser-Leu dipeptide regulates phosphoglycerate kinase activity

High night temperature strongly impacts TCA cycle, amino acid and polyamine biosynthetic pathways in rice in a sensitivity-dependent manner

Highly Resolved Systems Biology to Dissect the Etioplast-to-Chloroplast Transition in Tobacco Leaves

Hybrid weakness controlled by the dosage-dependent lethal (DL) gene system in common bean (Phaseolus vulgaris) is caused by a shoot-derived inhibitory signal leading to salicylic acid-associated root death

Identification of Arabidopsis mutants impaired in the systemic regulation of root nitrate uptake by the nitrogen status of the plant

Identification of primary and secondary metabolites with phosphorus status-dependent abundance inArabidopsis, and of the transcription factor PHR1 as a major regulator of metabolic changes during phosphorus limitation

Imbalanced Regulation of Fungal Nutrient Transports According to Phosphate Availability in a Symbiocosm Formed by Poplar, Sorghum, and Rhizophagus irregularis

Impact of seasonal warming on overwintering and spring phenology of blackcurrant

Increasing abscisic acid levels by immunomodulation in barley grains induces precocious maturation without changing grain composition

Increasing sucrose uptake capacity of wheat grains stimulates storage protein synthesis

Integrated analysis of rice transcriptomic and metabolomic responses to elevated night temperatures identifies sensitivity- and tolerance-related profiles

Integrative "omic" analysis reveals distinctive cold responses in leaves and roots of strawberry, Fragaria × ananassa 'Korona'

Integrative functional genomics of salt acclimatization in the model legume Lotus japonicus ⬇️

Inter-laboratory reproducibility of fast gas chromatography-electron impact-time of flight mass spectrometry (GC-EI-TOF/MS) based plant metabolomics.

Ion-dependent metabolic responses of Vicia faba L. to salt stress

Isolation and characterization of three new PGPR and their effects on the growth of Arabidopsis and Datura plants

Light modulated activity of root alkaline/neutral invertase involves the interaction with 14-3-3 proteins

Mass appeal: metabolite identification in mass spectrometry-focused untargeted metabolomics

Metabolic and transcriptional transitions in barley glumes reveal a role as transitory resource buffers during endosperm filling

Metabolic and transcriptomic signatures of rice floral organs reveal sugar starvation as a factor in reproductive failure under heat and drought stress

Metabolic contribution to salt stress in two maize hybrids with contrasting resistance

Metabolic labeling of plant cell cultures with K(15)NO3 as a tool for quantitative analysis of proteins and metabolites

Metabolic profiling of Arabidopsis thaliana epidermal cells

Metabolic profiling of ‘Conference’ pears under low oxygen stress

Metabolic profiling reveals local and systemic responses of host plants to nematode parasitism

Metabolic responses of rice cultivars with different tolerance to combined drought and heat stress under field conditions

Metabolic responses of rice source and sink organs during recovery from combined drought and heat stress in the field

Metabolite Profiling Reveals Sensitivity-Dependent Metabolic Shifts in Rice (Oryza Sativa L.) Cultivars under High Night Temperature Stress

Metabolite and transcript markers for the prediction of potato drought tolerance.

Metabolite profiling reveals novel multi-level cold responses in the diploid model Fragaria vesca (woodland strawberry).

Metabolome analysis: the potential of in vivo labeling with stable isotopes for metabolite profiling

Metabolomic linkage reveals functional interaction between glucose-dependent insulinotropic polypeptide and ghrelin in humans

Metabolomics Identifies a Biomarker Revealing In Vivo Loss of Functional β-Cell Mass Before Diabetes Onset

Mining for robust transcriptional and metabolic responses to long-term salt stress: a case study on the model legume Lotus japonicus

Molecular signatures associated with increased freezing tolerance due to low temperature memory in Arabidopsis

Multi-omics reveals mechanisms of total resistance to extreme illumination of a desert alga

Multiplexed Profiling and Data Processing Methods to Identify Temperature-Regulated Primary Metabolites Using Gas Chromatography Coupled to Mass Spectrometry

NLR mutations suppressing immune hybrid incompatibility and their effects on disease resistance.

Natural Variation in Freezing Tolerance and Cold Acclimation Response in Arabidopsis thaliana and Related Species

Nonsupervised Construction and Application of Mass Spectral and Retention Time Index Libraries From Time-of-Flight Gas Chromatography-Mass Spectrometry Metabolite Profiles

Nonsupervised construction and application of mass spectral and retention time index libraries from time-of-flight gas chromatography-mass spectrometry metabolite profiles

Opposite fates of the purine metabolite allantoin under water and nitrogen limitations in bread wheat

Overexpression of sinapine esterase BnSCE3 in oilseed rape seeds triggers global changes in seed metabolism

Phosphorus stress in common bean: root transcript and metabolic responses

Physiologic and metabolic responses of wheat seedlings to elevated and super-elevated carbon dioxide

Plant metabolomics and its potential for systems biology research background concepts, technology, and methodology

Plant temperature acclimation and growth rely on cytosolic ribosome biogenesis factor homologs.

Predicting Arabidopsis freezing tolerance and heterosis in freezing tolerance from metabolite composition

Primed primary metabolism in systemic leaves: a functional systems analysis

Profiling methods to identify cold-regulated primary metabolites using gas chromatography coupled to mass spectrometry

Rapid transcriptional and metabolic regulation of the deacclimation process in cold acclimated Arabidopsis thaliana