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List of works by Enrico Lavezzo

A large-scale evaluation of computational protein function prediction

scientific article

An expanded evaluation of protein function prediction methods shows an improvement in accuracy ⬇️

scientific article

Antimicrobial treatment and containment measures for an extremely drug-resistant Klebsiella pneumoniae ST101 isolate carrying pKPN101-IT, a novel fully sequenced bla(KPC-2) plasmid

scientific article published on 12 September 2012

Applications of next-generation sequencing technologies to diagnostic virology

scientific article published on 14 November 2011

Argot2: a large scale function prediction tool relying on semantic similarity of weighted Gene Ontology terms.

scientific article

Changes in microRNA expression during disease progression in patients with chronic viral hepatitis

scientific article published on 13 January 2015

Characterization of Intra-Type Variants of Oncogenic Human Papillomaviruses by Next-Generation Deep Sequencing of the E6/E7 Region

scientific article published on 14 March 2016

Characterization of a novel complex BRAF mutation in a follicular variant papillary thyroid carcinoma

scientific article published on 21 April 2008

Conserved presence of G-quadruplex forming sequences in the Long Terminal Repeat Promoter of Lentiviruses

scientific article (publication date: 17 May 2017)

Correction: Oxidative DNA damage correlates with cell immortalization and mir-92 expression in hepatocellular carcinoma.

scientific article published on 23 April 2014

Draft genome sequences of two Neisseria meningitidis serogroup C clinical isolates

scientific article published on 30 July 2010

Eliciting the Functional Taxonomy from protein annotations and taxa

scientific article published on 18 August 2016

Enhancing protein function prediction with taxonomic constraints--The Argot2.5 web server.

scientific article published on 27 August 2015

Fatal Case of West Nile Neuroinvasive Disease in Bulgaria

scientific article published on 15 December 2016

Four year longitudinal study of Mycobacterium tuberculosis complex isolates in a region of North-Eastern Italy

scientific article published on 10 May 2014

Full Genome Sequence-Based Comparative Study of Wild-Type and Vaccine Strains of Infectious Laryngotracheitis Virus from Italy

scientific article published on 18 February 2016

G-quadruplex forming sequences in the genome of all known human viruses: A comprehensive guide

article published in 2018

G-quadruplex forming sequences in the genome of all known human viruses: a comprehensive guide

scientific article published on 11 June 2018

Genome sequencing of West Nile Virus from human cases in Greece, 2012.

scientific article published on 24 September 2013

Genomic comparative analysis and gene function prediction in infectious diseases: application to the investigation of a meningitis outbreak

scientific article

Human Virus Genomes Are Enriched in Conserved Adenine/Thymine/Uracil Multiple Tracts That Pause Polymerase Progression

scientific article published in 2022

Human papillomavirus genotyping by 454 next generation sequencing technology

scientific article

Identification of novel X-linked gain-of-function RPGR-ORF15 mutation in Italian family with retinitis pigmentosa and pathologic myopia

scientific article published on 20 December 2016

Infection dynamics in a traveller with persistent shedding of Zika virus RNA in semen for six months after returning from Haiti to Italy, January 2016

scientific article

Isolation of infectious Zika virus from saliva and prolonged viral RNA shedding in a traveller returning from the Dominican Republic to Italy, January 2016

scientific article

KPC-mediated resistance in Klebsiella pneumoniae in two hospitals in Padua, Italy, June 2009-December 2011: massive spreading of a KPC-3-encoding plasmid and involvement of non-intensive care units

scientific article

Large human outbreak of West Nile virus infection in north-eastern Italy in 2012

scientific article

Mapping and characterization of G-quadruplexes in Mycobacterium tuberculosis gene promoter regions.

scientific article published on 18 July 2017

Measles Virus Infection and Immunity in a Suboptimal Vaccination Coverage Setting

scientific article published on 28 November 2019

NeSSie: a tool for the identification of approximate DNA sequence symmetries.

scientific article published on 7 March 2018

Neutralising reactivity against SARS-CoV-2 Delta and Omicron variants by vaccination and infection history

scientific article published in 2022

New endemic West Nile virus lineage 1a in northern Italy, July 2012.

scientific article

Next-generation sequencing technologies in diagnostic virology

scientific article published on 21 March 2013

Novel West Nile virus lineage 1a full genome sequences from human cases of infection in north-eastern Italy, 2011.

scientific article published on 25 September 2012

Optimizing PCR primers targeting the bacterial 16S ribosomal RNA gene

article

Oxidative Stress and Inducible Nitric Oxide Synthase Induction in Carcinogenesis ⬇️

scientific article published on November 18, 2010

Oxidative damage in the progression of chronic liver disease to hepatocellular carcinoma: an intricate pathway

scientific article published on March 2014

Pathway Inspector: a pathway based web application for RNAseq analysis of model and non-model organisms.

scientific article

Phylogenetic characterization of Central/Southern European lineage 2 West Nile virus: analysis of human outbreaks in Italy and Greece, 2013-2014.

scientific article published on 30 July 2015

Prospective epidemiological, molecular, and genetic characterization of a novel coronavirus disease in the Val Venosta/Vinschgau: the CHRIS COVID-19 study protocol

scientific article published on 12 October 2021

QPARSE: searching for long-looped or multimeric G-quadruplexes potentially distinctive and druggable

scientific article published on 01 January 2020

Rapid SARS-CoV-2 Intra-Host and Within-Household Emergence of Novel Haplotypes

scientific article published in 2022

Reconstructing the recent West Nile virus lineage 2 epidemic in Europe and Italy using discrete and continuous phylogeography.

scientific article

Reducing bias in RNA sequencing data: a novel approach to compute counts

scientific article

Reprogramming Methods Do Not Affect Gene Expression Profile of Human Induced Pluripotent Stem Cells

scientific article published on 20 January 2017

Suppression of COVID-19 outbreak in the municipality of Vo, Italy

scientific article published on 18 April 2020

Suppression of a SARS-CoV-2 outbreak in the Italian municipality of Vo'

scientific article published on 30 June 2020

The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens

scientific article published on 19 November 2019

The complete genome sequence analysis of West Nile virus strains isolated in Slovakia (central Europe)

scientific article published on 04 October 2018

The complex epidemiological scenario of West Nile virus in Italy

scientific article published on 30 September 2013

The genome of the domesticated apple (Malus × domestica Borkh.)

scientific article

Third generation sequencing technologies applied to diagnostic microbiology: benefits and challenges in applications and data analysis

scientific article

Transcriptome and Cell Physiological Analyses in Different Rice Cultivars Provide New Insights Into Adaptive and Salinity Stress Responses.

scientific article published on 5 March 2018

Whole genome sequencing and phylogenetic analysis of West Nile virus lineage 1 and lineage 2 from human cases of infection, Italy, August 2013.

scientific article published on 19 September 2013

Zika virus infection in semen: effect on human reproduction

scientific article published on 21 August 2017

Zika virus: from pathogenesis to disease control

scientific article

keeSeek: searching distant non-existing words in genomes for PCR-based applications.

scientific article published on 27 May 2014

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