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List of works by Siobhan M Brady

50 years of Arabidopsis research: highlights and future directions

scientific article published on 14 October 2015

<i>De novo</i> stem cell establishment in meristems requires repression of organ boundary cell fate

scientific article published in 2022

A Gene Regulatory Network for Cellular Reprogramming in Plant Regeneration

scientific article published on 15 February 2018

A PXY-Mediated Transcriptional Network Integrates Signaling Mechanisms to Control Vascular Development in Arabidopsis

scientific article published on 05 December 2019

A bipartite transcription factor module controlling expression in the bundle sheath of Arabidopsis thaliana

scientific article published on 23 November 2020

A brief history of the TDIF-PXY signalling module: balancing meristem identity and differentiation during vascular development

scientific article

A genome-scale TF-DNA interaction network of transcriptional regulation of Arabidopsis primary and specialized metabolism

scientific article published on 01 November 2021

A high-resolution root spatiotemporal map reveals dominant expression patterns.

scientific article published in November 2007

A network of transcriptional repressors modulates auxin responses

scientific article published on 18 November 2020

A single cis-element that controls cell-type specific expression in Arabidopsis

A stele-enriched gene regulatory network in the Arabidopsis root

scientific article

A tomato phloem-mobile protein regulates the shoot-to-root ratio by mediating the auxin response in distant organs.

scientific article

An Arabidopsis gene regulatory network for secondary cell wall synthesis

scientific article

Anno genominis XX: 20 years of Arabidopsis genomics

scientific article

Arabidopsis bioinformatics: tools and strategies

scientific article

Auxin-Mediated Cell Cycle Activation during Early Lateral Root Initiation

scientific article published on 02 May 2019

BEL1-LIKE HOMEODOMAIN6 and KNOTTED ARABIDOPSIS THALIANA7 interact and regulate secondary cell wall formation via repression of REVOLUTA.

scientific article published on 9 December 2014

Bioinformatic Tools in Arabidopsis Research

scientific article published on 01 January 2021

Bioinformatic tools in Arabidopsis research

scientific article published on 01 January 2014

Cell identity mediates the response of Arabidopsis roots to abiotic stress.

scientific article published on 24 April 2008

Characterization of growth and development of sorghum genotypes with differential susceptibility to Striga hermonthica

scientific article published on 01 December 2021

Clustering and Differential Alignment Algorithm: Identification of Early Stage Regulators in the Arabidopsis thaliana Iron Deficiency Response

scientific article published on 28 August 2015

Combining expression and comparative evolutionary analysis. The COBRA gene family

scientific article published on 10 November 2006

Comparative transcriptomics reveals patterns of selection in domesticated and wild tomato

scientific article published on 26 June 2013

Complete substitution of a secondary cell wall with a primary cell wall in Arabidopsis

scientific article published on 01 October 2018

Comprehensive developmental profiles of gene activity in regions and subregions of the Arabidopsis seed.

scientific article published on 14 January 2013

Current status of the multinational Arabidopsis community

scientific article published on 01 July 2020

DNA methylation and gene expression regulation associated with vascularization in Sorghum bicolor

scientific article

Detecting separate time scales in genetic expression data

scientific article (publication date: 16 June 2010)

Draft Genome Sequence of Rhizobium rhizogenes Strain ATCC 15834.

scientific article published on 30 October 2014

Enhanced Y1H assays for Arabidopsis.

scientific article published on 30 October 2011

Epistatic Transcription Factor Networks Differentially Modulate Arabidopsis Growth and Defense

scientific article published on 18 December 2019

Establishment of Expression in the SHORTROOT-SCARECROW Transcriptional Cascade through Opposing Activities of Both Activators and Repressors.

scientific article published on 27 October 2016

Evolutionary flexibility in flooding response circuitry in angiosperms

scientific article published on 01 September 2019

Extreme breeding: Leveraging genomics for crop improvement

scientific article

FRS7 and FRS12 recruit NINJA to regulate expression of glucosinolate biosynthesis genes

scientific article published on 08 April 2020

Forming roots from shoot

scientific article published on 4 March 2022

Gene regulatory networks in the Arabidopsis root ⬇️

scientific article published on November 26, 2012

Hairy root transformation using Agrobacterium rhizogenes as a tool for exploring cell type-specific gene expression and function using tomato as a model.

scientific article

High-Throughput Single-Cell Transcriptome Profiling of Plant Cell Types

scientific article published on 01 May 2019

High-resolution metabolic mapping of cell types in plant roots

scientific article published on 8 March 2013

Identification of Protein-DNA Interactions Using Enhanced Yeast One-Hybrid Assays and a Semiautomated Approach

scientific article published in January 2017

Identification of novel loci regulating interspecific variation in root morphology and cellular development in tomato.

scientific article

Indel Group in Genomes (IGG) Molecular Genetic Markers.

scientific article published on 19 July 2016

Innovation, Conservation and Repurposing of Gene Function in Plant Root Cell Type Development

scientific article

Innovation, conservation, and repurposing of gene function in root cell type development

Innovation, conservation, and repurposing of gene function in root cell type development

scientific article

Integration of large-scale data for extraction of integrated Arabidopsis root cell-type specific models.

scientific article

Isolation of Nuclei in Tagged Cell Types (INTACT), RNA Extraction and Ribosomal RNA Degradation to Prepare Material for RNA-Seq

scholarly article by Mauricio Alberto Reynoso et al published 2018 in Bio-protocol

Lateral root emergence in Arabidopsis is dependent on transcription factor LBD29 regulation of auxin influx carrier LAX3. ⬇️

scientific article published on 30 August 2016

Manipulating large-scale Arabidopsis microarray expression data: identifying dominant expression patterns and biological process enrichment

scientific article

Mapping Transcriptional Networks in Plants: Data-Driven Discovery of Novel Biological Mechanisms.

scientific article published on 25 January 2016

Molecular Mechanisms Driving Switch Behavior in Xylem Cell Differentiation

scientific article published on 01 July 2019

Molecular control of crop shade avoidance.

scientific article published on 23 March 2016

Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.

scientific article published on 9 January 2018

Novel biological insights revealed from cell type-specific expression profiling.

scientific article

Nuclear transcriptomes at high resolution using retooled INTACT

Nuclear transcriptomes at high resolution using retooled INTACT.

scientific article

Omics and modelling approaches for understanding regulation of asymmetric cell divisions in arabidopsis and other angiosperm plants

scientific article

PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis

scientific article published on 29 June 2015

Plant developmental responses to climate change

scientific article

Profiling of accessible chromatin regions across multiple plant species and cell types reveals common gene regulatory principles and new control modules.

scientific article published on 11 December 2017

Promoter-based integration in plant defense regulation

scientific article published on 28 October 2014

Proteome-wide, Structure-Based Prediction of Protein-Protein Interactions/New Molecular Interactions Viewer

scientific article published on 24 January 2019

Protonophore- and pH-insensitive glucose and sucrose accumulation detected by FRET nanosensors in Arabidopsis root tips

scientific article

Publisher Correction: A network of transcriptional repressors modulates auxin responses

scientific article published on 23 December 2020

Quality control and evaluation of plant epigenomics data

scientific article published on 20 January 2022

RALFL34 regulates formative cell divisions in Arabidopsis pericycle during lateral root initiation

scientific article published on 18 July 2016

Real-time whole-plant dynamics of heavy metal transport in Arabidopsis halleri and Arabidopsis thaliana by gamma-ray imaging

scientific article published on 23 April 2019

Reassess the t Test: Interact with All Your Data via ANOVA.

scientific article

Reconstructing spatiotemporal gene expression data from partial observations

scientific article published on 16 July 2009

Regulation of Root Angle and Gravitropism

scientific article

SUPPRESSOR OF GAMMA RESPONSE 1 links DNA damage response to organ regeneration

scientific article published on 8 December 2017

Spatiotemporal regulation of cell-cycle genes by SHORTROOT links patterning and growth.

scientific article

Specification and regulation of vascular tissue identity in the Arabidopsis embryo

scientific article published on 20 March 2020

Systems analysis of plant functional, transcriptional, physical interaction, and metabolic networks

scientific article published on 30 October 2012

Systems approaches to identifying gene regulatory networks in plants.

scientific article

Systems biology update: cell type-specific transcriptional regulatory networks

scientific article published on 04 December 2009

The Botany Array Resource: e-Northerns, Expression Angling, and promoter analyses

scientific article published on 01 July 2005

The Next Generation of Training for Arabidopsis Researchers: Bioinformatics and Quantitative Biology.

scientific article published in December 2017

The Plant Vascular System: Evolution, Development and FunctionsF ⬇️

scientific article published on April 1, 2013

The polyadenylation factor FIP1 is important for plant development and root responses to abiotic stresses

scientific article published on 26 June 2019

The soil microbiome modulates the sorghum root metabolome and cellular traits with a concomitant reduction of Striga infection

scientific article published in March 2024

Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation

scientific article

Transcriptional networks: The next generation

scientific article

Transcriptional regulation of nitrogen-associated metabolism and growth

scientific article published in Nature

Translational regulation contributes to the elevated CO2 response in two Solanum species

scientific article published on 03 December 2019

Unraveling the dynamic transcriptome

scientific article published on September 2006

Web-queryable large-scale data sets for hypothesis generation in plant biology

scientific article

When the time is ripe ⬇️

scientific article published on June 25, 2013

iPlant Systems Biology (iPSB): An International Network Hub in the Plant Community

scientific article published on 21 May 2019

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