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List of works by Siobhan M Brady

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A high-resolution root spatiotemporal map reveals dominant expression patterns.

scientific article published in November 2007
The Botany Array Resource: e-Northerns, Expression Angling, and promoter analyses

scientific article published on 01 July 2005
Cell identity mediates the response of Arabidopsis roots to abiotic stress.

scientific article published on 24 April 2008
The Plant Vascular System: Evolution, Development and FunctionsF

scientific article published on April 1, 2013
Comprehensive developmental profiles of gene activity in regions and subregions of the Arabidopsis seed.

scientific article published on 14 January 2013
An Arabidopsis gene regulatory network for secondary cell wall synthesis

scientific article
Spatiotemporal regulation of cell-cycle genes by SHORTROOT links patterning and growth.

scientific article
Comparative transcriptomics reveals patterns of selection in domesticated and wild tomato

scientific article published on 26 June 2013
Plant developmental responses to climate change

scientific article
Hairy root transformation using Agrobacterium rhizogenes as a tool for exploring cell type-specific gene expression and function using tomato as a model.

scientific article
A stele-enriched gene regulatory network in the Arabidopsis root

scientific article
Web-queryable large-scale data sets for hypothesis generation in plant biology

scientific article
High-resolution metabolic mapping of cell types in plant roots

scientific article published on 8 March 2013
Enhanced Y1H assays for Arabidopsis.

scientific article published on 30 October 2011
50 years of Arabidopsis research: highlights and future directions

scientific article published on 14 October 2015
Systems approaches to identifying gene regulatory networks in plants.

scientific article
Protonophore- and pH-insensitive glucose and sucrose accumulation detected by FRET nanosensors in Arabidopsis root tips

scientific article
Systems analysis of plant functional, transcriptional, physical interaction, and metabolic networks

scientific article published on 30 October 2012
Combining expression and comparative evolutionary analysis. The COBRA gene family

scientific article published on 10 November 2006
PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis

scientific article published on 29 June 2015
BEL1-LIKE HOMEODOMAIN6 and KNOTTED ARABIDOPSIS THALIANA7 interact and regulate secondary cell wall formation via repression of REVOLUTA.

scientific article published on 9 December 2014
Manipulating large-scale Arabidopsis microarray expression data: identifying dominant expression patterns and biological process enrichment

scientific article
Identification of novel loci regulating interspecific variation in root morphology and cellular development in tomato.

scientific article
Promoter-based integration in plant defense regulation

scientific article published on 28 October 2014
Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation

scientific article
Lateral root emergence in Arabidopsis is dependent on transcription factor LBD29 regulation of auxin influx carrier LAX3.

scientific article published on 30 August 2016
Profiling of accessible chromatin regions across multiple plant species and cell types reveals common gene regulatory principles and new control modules.

scientific article published on 11 December 2017
Establishment of Expression in the SHORTROOT-SCARECROW Transcriptional Cascade through Opposing Activities of Both Activators and Repressors.

scientific article published on 27 October 2016
Reconstructing spatiotemporal gene expression data from partial observations

scientific article published on 16 July 2009
Reassess the t Test: Interact with All Your Data via ANOVA.

scientific article
Molecular control of crop shade avoidance.

scientific article published on 23 March 2016
Mapping Transcriptional Networks in Plants: Data-Driven Discovery of Novel Biological Mechanisms.

scientific article published on 25 January 2016
A brief history of the TDIF-PXY signalling module: balancing meristem identity and differentiation during vascular development

scientific article
Unraveling the dynamic transcriptome

scientific article published on September 2006
A tomato phloem-mobile protein regulates the shoot-to-root ratio by mediating the auxin response in distant organs.

scientific article
RALFL34 regulates formative cell divisions in Arabidopsis pericycle during lateral root initiation

scientific article published on 18 July 2016
High-Throughput Single-Cell Transcriptome Profiling of Plant Cell Types

scientific article published on 01 May 2019
Transcriptional regulation of nitrogen-associated metabolism and growth

scientific article published in Nature
Omics and modelling approaches for understanding regulation of asymmetric cell divisions in arabidopsis and other angiosperm plants

scientific article
A Gene Regulatory Network for Cellular Reprogramming in Plant Regeneration

scientific article published on 15 February 2018
Systems biology update: cell type-specific transcriptional regulatory networks

scientific article published on 04 December 2009
Novel biological insights revealed from cell type-specific expression profiling.

scientific article
Gene regulatory networks in the Arabidopsis root

scientific article published on November 26, 2012
Nuclear transcriptomes at high resolution using retooled INTACT.

scientific article
SUPPRESSOR OF GAMMA RESPONSE 1 links DNA damage response to organ regeneration

scientific article published on 8 December 2017
Complete substitution of a secondary cell wall with a primary cell wall in Arabidopsis

scientific article published on 01 October 2018
The Next Generation of Training for Arabidopsis Researchers: Bioinformatics and Quantitative Biology.

scientific article published in December 2017
Proteome-wide, Structure-Based Prediction of Protein-Protein Interactions/New Molecular Interactions Viewer

scientific article published on 24 January 2019
Regulation of Root Angle and Gravitropism

scientific article
Identification of Protein-DNA Interactions Using Enhanced Yeast One-Hybrid Assays and a Semiautomated Approach

scientific article published in January 2017

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