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List of works by Artur Silva

Campylobacter fetus subspecies: comparative genomics and prediction of potential virulence targets

scientific article published on 6 August 2012

Co-Expression Networks for Causal Gene Identification Based on RNA-Seq Data of Corynebacterium pseudotuberculosis

scientific article published on 14 July 2020

Complete genome sequence of Corynebacterium pseudotuberculosis Cp31, isolated from an Egyptian buffalo

scientific article

Complete genome sequence of Corynebacterium pseudotuberculosis I19, a strain isolated from a cow in Israel with bovine mastitis

scientific article

Complete genome sequence of Corynebacterium pseudotuberculosis strain CIP 52.97, isolated from a horse in Kenya

scientific article published on December 2011

Complete genome sequence of type strain Campylobacter fetus subsp. venerealis NCTC 10354T.

scientific article

Complete genome sequences of Corynebacterium pseudotuberculosis strains 3/99-5 and 42/02-A, isolated from sheep in Scotland and Australia, respectively.

scientific article

Corynebacterium pseudotuberculosis RNA-seq data from abiotic stresses.

scientific article

DISMIRA: Prioritization of disease candidates in miRNA-disease associations based on maximum weighted matching inference model and motif-based analysis

scientific article published on 26 May 2015

Draft Genome Sequence of the N2-Fixing Cyanobacterium Nostoc piscinale CENA21, Isolated from the Brazilian Amazon Floodplain

scientific article

Evidence for reductive genome evolution and lateral acquisition of virulence functions in two Corynebacterium pseudotuberculosis strains

scientific article

GO FEAT: a rapid web-based functional annotation tool for genomic and transcriptomic data

scientific article

Genome Sequence of Corynebacterium ulcerans Strain 210932.

scientific article

Genome analysis of two multidrug-resistant Escherichia coli O8:H9-ST48 strains isolated from lettuce

scientific article published in 2021

Genome sequence of Exiguobacterium antarcticum B7, isolated from a biofilm in Ginger Lake, King George Island, Antarctica

scientific article (publication date: December 2012)

Genome sequence of the Corynebacterium pseudotuberculosis Cp316 strain, isolated from the abscess of a Californian horse

scientific article

Genomic Architecture of the Two Cold-Adapted Genera Exiguobacterium and Psychrobacter: Evidence of Functional Reduction in the Exiguobacterium antarcticum B7 genome

scientific article published on 8 February 2018

Genomic analysis of four strains of Corynebacterium pseudotuberculosis bv. Equi isolated from horses showing distinct signs of infection

scientific article published on 31 January 2017

High efficiency application of a mate-paired library from next-generation sequencing to postlight sequencing: Corynebacterium pseudotuberculosis as a case study for microbial de novo genome assembly.

scientific article

Homology modeling, molecular dynamics and QM/MM study of the regulatory protein PhoP from Corynebacterium pseudotuberculosis

scientific article

Improving Metagenomic Assemblies Through Data Partitioning: A GC Content Approach

In Silico Protein-Protein Interactions: Avoiding Data and Method Biases Over Sensitivity and Specificity.

scientific article

In silico functional prediction of hypothetical proteins from the core genome of Corynebacterium pseudotuberculosis biovar ovis

scientific article published on 26 August 2020

Label-free quantitative proteomics of Corynebacterium pseudotuberculosis isolates reveals differences between Biovars ovis and equi strains

scientific article

Omics profiles used to evaluate the gene expression of Exiguobacterium antarcticum B7 during cold adaptation.

scientific article

Pan4Draft: A Computational Tool to Improve the Accuracy of Pan-Genomic Analysis Using Draft Genomes.

scientific article

PanWeb: A web interface for pan-genomic analysis

scientific article

PetriScape - A plugin for discrete Petri net simulations in Cytoscape.

scientific article published on 4 June 2016

Polymorphisms of ADME-related genes and their implications for drug safety and efficacy in Amazonian Amerindians

article

Re-sequencing and optical mapping reveals misassemblies and real inversions on Corynebacterium pseudotuberculosis genomes

scientific article published on 08 November 2019

Reconstruction of the Fatty Acid Biosynthetic Pathway of Exiguobacterium antarcticum B7 Based on Genomic and Bibliomic Data

scientific article

SIMBA: a web tool for managing bacterial genome assembly generated by Ion PGM sequencing technology

scientific article

Serological proteome analysis of Corynebacterium pseudotuberculosis isolated from different hosts reveals novel candidates for prophylactics to control caseous lymphadenitis.

scientific article published on 6 September 2014

Simplifier: a web tool to eliminate redundant NGS contigs

scientific article

Taxonomic classification of strain PO100/5 shows a broader geographic distribution and genetic markers of the recently described Corynebacterium silvaticum

scientific article published on 21 December 2020

The Corynebacterium pseudotuberculosis in silico predicted pan-exoproteome

scientific article

Value of a newly sequenced bacterial genome

scientific article

Whole genome sequencing of environmental Vibrio cholerae O1 from 10 nanograms of DNA using short reads.

scientific article

Whole-genome sequence of Corynebacterium pseudotuberculosis PAT10 strain isolated from sheep in Patagonia, Argentina

scientific article published on November 2011

Whole-genome sequence of Corynebacterium pseudotuberculosis strain Cp162, isolated from camel.

scientific article published on October 2012

miRegulome: a knowledge-base of miRNA regulomics and analysis.

scientific article published on 5 August 2015

σ(ECF) factors of gram-positive bacteria: a focus on Bacillus subtilis and the CMNR group

scientific article

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