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List of works by Volkan Atalay

A signal transduction score flow algorithm for cyclic cellular pathway analysis, which combines transcriptome and ChIP-seq data.

scientific article

Bi-k-bi clustering: mining large scale gene expression data using two-level biclustering

scientific article

DEEPScreen: high performance drug-target interaction prediction with convolutional neural networks using 2-D structural compound representations

scientific article published on 08 January 2020

DEEPred: Automated Protein Function Prediction with Multi-task Feed-forward Deep Neural Networks

scientific article published on 14 May 2019

Drug Repurposing Approach to Identify Candidate Drug Molecules for Hepatocellular Carcinoma

scientific article published in 2024

ECPred: a tool for the prediction of the enzymatic functions of protein sequences based on the EC nomenclature

scholarly article by Alperen Dalkiran published in September 2018

EClerize: A customized force-directed graph drawing algorithm for biological graphs with EC attributes

scientific article published on 26 March 2018

GOPred: GO molecular function prediction by combined classifiers

scientific article

Identification of novel reference genes based on MeSH categories ⬇️

scientific article

Implicit motif distribution based hybrid computational kernel for sequence classification.

scientific article

Large-scale automated function prediction of protein sequences and an experimental case study validation on PTEN transcript variants.

scientific article published on 3 November 2017

Recent applications of deep learning and machine intelligence on in silico drug discovery: methods, tools and databases

scientific article published on 01 September 2019

Silhouette-based 3-D model reconstruction from multiple images.

scientific article published in January 2003

Subsequence-based feature map for protein function classification.

scientific article published on 15 December 2007

The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens

scientific article published on 19 November 2019

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