Search filters

List of works by Jean-Luc Jannink

A Low Resolution Epistasis Mapping Approach To Identify Chromosome Arm Interactions in Allohexaploid Wheat

scientific article published on 07 March 2019

A framework for genomics-informed ecophysiological modeling in plants

article

A statistical framework for detecting mislabeled and contaminated samples using shallow-depth sequence data

scientific article published on 12 December 2018

Accuracies Of Univariate And Multivariate Genomic Prediction Models In African Cassava

Accuracies of univariate and multivariate genomic prediction models in African cassava

scientific article

Accuracy of genomic selection to predict maize single-crosses obtained through different mating designs.

scientific article published on 14 February 2018

An algorithm for deciding the number of clusters and validation using simulated data with application to exploring crop population structure ⬇️

An alternative covariance estimator to investigate genetic heterogeneity in populations

scientific article

Bayesian multilocus association mapping on ordinal and censored traits and its application to the analysis of genetic variation among Oryza sativa L. germplasms

scientific article published on 9 January 2009

Breedbase: a digital ecosystem for modern plant breeding

scientific article published in 2022

Breeding Value of Primary Synthetic Wheat Genotypes for Grain Yield

scientific article

Comparison of Phenotyping Methods for Resistance to Stem Rot and Aggregated Sheath Spot in Rice

Correction to: Accuracy of genomic selection to predict maize single-crosses obtained through different mating designs

scientific article published on 01 July 2018

Correction: Genomic Selection and Association Mapping in Rice (Oryza sativa): Effect of Trait Genetic Architecture, Training Population Composition, Marker Number and Statistical Model on Accuracy of Rice Genomic Selection in Elite, Tropical Rice Br

scientific article published on 30 June 2015

Correction: SNP Discovery and Chromosome Anchoring Provide the First Physically-Anchored Hexaploid Oat Map and Reveal Synteny with Model Species.

scientific article

Data-driven decentralized breeding increases prediction accuracy in a challenging crop production environment

scientific article published on 19 August 2021

Development of high-density genetic maps for barley and wheat using a novel two-enzyme genotyping-by-sequencing approach

scientific article

Digestion residues of typical and high-beta-glucan oat flours provide substrates for in vitro fermentation

scientific article published on 06 June 2007

Dynamics of long-term genomic selection

scientific article published on 16 August 2010

Effectiveness of genomic prediction of maize hybrid performance in different breeding populations and environments

scientific article

Estimating allelic number and identity in state of QTLs in interconnected families

scientific article published on 01 April 2003

Evaluating Imputation Algorithms for Low-Depth Genotyping-By-Sequencing (GBS) Data

scientific article

Evaluation of Genomic Prediction Methods for Fusarium Head Blight Resistance in Wheat

Exploring genotype by environment interaction on cassava yield and yield related traits using classical statistical methods

scientific article published in 2022

Factors affecting accuracy from genomic selection in populations derived from multiple inbred lines: a Barley case study

scientific article published on 18 March 2009

Genetic Correlation, Genome-Wide Association and Genomic Prediction of Portable NIRS Predicted Carotenoids in Cassava Roots

scientific article published on 04 December 2019

Genetic Mapping Using Genotyping-by-Sequencing in the Clonally Propagated Cassava

Genome wide association study of 5 agronomic traits in olive (Olea europaea L.).

scientific article published on 10 December 2019

Genome-Enabled Prediction Models for Yield Related Traits in Chickpea

scientific article published on 22 November 2016

Genome-Wide Association Mapping of Correlated Traits in Cassava: Dry Matter and Total Carotenoid Content.

scientific article

Genome-Wide Association and Prediction Reveals Genetic Architecture of Cassava Mosaic Disease Resistance and Prospects for Rapid Genetic Improvement

scientific article published on 01 July 2016

Genome-wide association analysis reveals new insights into the genetic architecture of defensive, agro-morphological and quality-related traits in cassava

scientific article published on 30 July 2020

Genome-wide association mapping and genomic prediction for CBSD resistance in Manihot esculenta

scientific article

Genome-wide association study for oat (Avena sativa L.) beta-glucan concentration using germplasm of worldwide origin

scientific article published on 3 August 2012

Genome-wide association study of resistance to cassava green mite pest and related traits in cassava

scholarly article

Genomic Selection in Wheat Breeding using Genotyping-by-Sequencing

article

Genomic predictability of interconnected biparental maize populations

scientific article

Genomic prediction and quantitative trait locus discovery in a cassava training population constructed from multiple breeding stages

scientific article published in 2020

Genomic prediction in biparental tropical maize populations in water-stressed and well-watered environments using low-density and GBS SNPs

scientific article published on 19 November 2014

Genomic prediction in maize breeding populations with genotyping-by-sequencing

scientific article

Genomic prediction of seed nutritional traits in biparental families of oat (<i>Avena sativa</i>)

scientific article published in 2023

Genomic selection and association mapping in rice (Oryza sativa): effect of trait genetic architecture, training population composition, marker number and statistical model on accuracy of rice genomic selection in elite, tropical rice breeding lines

scientific article

Genomic selection in plant breeding

scientific article published on 01 January 2014

Genomic selection in plant breeding: from theory to practice

scientific article

GrainGenes: centralized small grain resources and digital platform for geneticists and breeders.

scientific article

Heritable temporal gene expression patterns correlate with metabolomic seed content in developing hexaploid oat seed

scientific article published on 04 January 2020

High-resolution mapping of resistance to cassava mosaic geminiviruses in cassava using genotyping-by-sequencing and its implications for breeding

scientific article

High-throughput phenotyping platforms enhance genomic selection for wheat grain yield across populations and cycles in early stage

scientific article published on 18 February 2019

Historical Introgressions from a Wild Relative of Modern Cassava Improved Important Traits and May Be Under Balancing Selection

scientific article published on 17 October 2019

Homeologous Epistasis in Wheat: The Search for an Immortal Hybrid

scientific article published on 24 January 2019

Identification and distribution of the NBS-LRR gene family in the Cassava genome

scientific article published on 7 May 2015

Identifying quantitative trait locus by genetic background interactions in association studies

scientific article published on 18 December 2006

Impact of dry solids and bile acid concentrations on bile acid binding capacity of extruded oat cereals.

scientific article

Impact of marker ascertainment bias on genomic selection accuracy and estimates of genetic diversity

scientific article

Improving Genomic Prediction in Cassava Field Experiments Using Spatial Analysis

scientific article published on 6 November 2017

Improving Genomic Prediction in Cassava Field Experiments by Accounting for Inter-plot Competition

scientific article published on 22 January 2018

Improving root characterisation for genomic prediction in cassava

scientific article published on 14 May 2020

Imputation of unordered markers and the impact on genomic selection accuracy

scientific article published on March 2013

In vitro bile acid binding activity within flour fractions from oat lines with typical and high beta-glucan amounts

scientific article published on 01 July 2006

In vitro bile acid binding of flours from oat lines varying in percentage and molecular weight distribution of beta-glucan

scientific article published in November 2005

Increased prediction accuracy in wheat breeding trials using a marker × environment interaction genomic selection model

scientific article

Integrating environmental covariates and crop modeling into the genomic selection framework to predict genotype by environment interactions

scientific article

Leveraging Transcriptomics Data for Genomic Prediction Models in Cassava

Locally epistatic genomic relationship matrices for genomic association and prediction

scientific article

Locally epistatic models for genome-wide prediction and association by importance sampling

scientific article published on 17 October 2017

Marker-Based Estimates Reveal Significant Non-additive Effects in Clonally Propagated Cassava (Manihot esculenta): Implications for the Prediction of Total Genetic Value and the Selection of Varieties.

scientific article published on 31 August 2016

Multiple-trait genomic selection methods increase genetic value prediction accuracy

scientific article

Multitrait, Random Regression, or Simple Repeatability Model in High-Throughput Phenotyping Data Improve Genomic Prediction for Wheat Grain Yield

scientific article published on July 2017

Multivariate Genome-Wide Association Analyses Reveal the Genetic Basis of Seed Fatty Acid Composition in Oat (Avena sativa L.).

scientific article published on 04 September 2019

New DArT markers for oat provide enhanced map coverage and global germplasm characterization.

scientific article

On the Metropolis-Hastings acceptance probability to add or drop a quantitative trait locus in Markov chain Monte Carlo-based Bayesian analyses

scientific article published on January 2004

Optimal Design of Preliminary Yield Trials with Genome-Wide Markers

article by Jeffrey B. Endelman et al published 2014 in Crop Science

Optimal sampling of a population to determine QTL location, variance, and allelic number

scientific article

Optimization of genomic selection training populations with a genetic algorithm

scientific article published on 6 May 2015

Overview of QTL detection in plants and tests for synergistic epistatic interactions

scientific article published on 10 August 2008

Performance of single nucleotide polymorphisms versus haplotypes for genome-wide association analysis in barley

scientific article

Perspectives for Genomic Selection Applications and Research in Plants

article

Population Genomics Related to Adaptation in Elite Oat Germplasm.

scientific article

Population genetics of genomics-based crop improvement methods

scientific article published on 10 January 2011

Prediction of Subgenome Additive and Interaction Effects in Allohexaploid Wheat

scientific article published on 07 March 2019

Prospects for Genomic Selection in Cassava Breeding.

scientific article published in November 2017

RNA polymerase mapping in plants identifies enhancers enriched in causal variants

article

RNA polymerase mapping in plants identifies intergenic regulatory elements enriched in causal variants

scientific article published in 2021

Rapid analyses of dry matter content and carotenoids in fresh cassava roots using a portable visible and near infrared spectrometer (Vis/NIRS).

scientific article published on 11 December 2017

Regional Heritability Mapping Provides Insights into Dry Matter Content in African White and Yellow Cassava Populations.

scientific article published in March 2018

Relatedness and Genotype × Environment Interaction Affect Prediction Accuracies in Genomic Selection: A Study in Cassava

Resistance to Multiple Temperate and Tropical Stem and Sheath Diseases of Rice

article

SNP discovery and chromosome anchoring provide the first physically-anchored hexaploid oat map and reveal synteny with model species

scientific article

Sexual dimorphism and the effect of wild introgressions on recombination in cassava (<i>Manihot esculenta</i> Crantz) breeding germplasm

scientific article published in 2021

Shrinkage estimation of the realized relationship matrix

scientific article

The Hordeum Toolbox: The Barley Coordinated Agricultural Project Genotype and Phenotype Resource

article

The Triticeae Toolbox: Combining Phenotype and Genotype Data to Advance Small-Grains Breeding

scientific article

The emergence of whole genome association scans in barley

scientific article published on April 2009

The use of unbalanced historical data for genomic selection in an international wheat breeding program

article

Training Population Optimization for Prediction of Cassava Brown Streak Disease Resistance in West African Clones

scientific article published on 10 December 2018

Training set optimization under population structure in genomic selection.

scientific article

Using quantitative trait loci results to discriminate among crosses on the basis of their progeny mean and variance

scientific article

solGS: a web-based tool for genomic selection

scientific article

Paulina is supported by:

About Paulina

Help