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Authors whose works are in public domain in at least one jurisdiction

List of works by Joshua B. Plotkin

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Coding-sequence determinants of gene expression in Escherichia coli

scientific article
Synonymous but not the same: the causes and consequences of codon bias

scientific article
The population genetics of dN/dS

scientific article
Rate-limiting steps in yeast protein translation

scientific article published on June 2013
Mutational robustness can facilitate adaptation

scientific article
Dynamical resonance can account for seasonality of influenza epidemics

scientific article
Reconciling molecular phylogenies with the fossil record

scientific article (publication date: 27 September 2011)
Improved Ribosome-Footprint and mRNA Measurements Provide Insights into Dynamics and Regulation of Yeast Translation.

scientific article published on 10 February 2016
Mortality due to influenza in the United States--an annualized regression approach using multiple-cause mortality data

scientific article
Hemagglutinin sequence clusters and the antigenic evolution of influenza A virus

scientific article
Tissue-specific codon usage and the expression of human genes

scholarly article
Codon bias and frequency-dependent selection on the hemagglutinin epitopes of influenza A virus

scientific article published on May 14, 2003
Redundancy, antiredundancy, and the robustness of genomes

scientific article
Seed dispersal and spatial pattern in tropical trees

scientific article (publication date: October 2006)
Prevalence of epistasis in the evolution of influenza A surface proteins

scientific article
Inferring the Dynamics of Diversification: A Coalescent Approach

scientific article (publication date: 28 September 2010)
Immune history shapes specificity of pandemic H1N1 influenza antibody responses

scientific article
Isolation and characterization of adenoviruses persistently shed from the gastrointestinal tract of non-human primates

scientific article published on 3 July 2009
Aging and gene expression in the primate brain

scientific article published in September 2005
Reinforcement of pre-zygotic isolation and karyotype evolution in Agrodiaetus butterflies

scientific article (publication date: 21 July 2005)
Variations in the progranulin gene affect global gene expression in frontotemporal lobar degeneration

scientific article
Consequences of defaunation for a tropical tree community

scientific article published on March 12, 2013
Contingency and entrenchment in protein evolution under purifying selection

scientific article
The dynamics of adaptation on correlated fitness landscapes

scientific article published on 26 October 2009
From extortion to generosity, evolution in the Iterated Prisoner's Dilemma.

scientific article published on 03 September 2013
Using protein complexes to predict phenotypic effects of gene mutation

scientific article
Why transcription factor binding sites are ten nucleotides long.

scientific article
Selection biases the prevalence and type of epistasis along adaptive trajectories

scientific article published on July 4, 2013
Detecting selection using a single genome sequence of M. tuberculosis and P. falciparum

scientific article published in April 2004
A statistical theory for sampling species abundances

scientific article
Vaccinating to protect a vulnerable subpopulation

scientific article published in May 2007
Single hemagglutinin mutations that alter both antigenicity and receptor binding avidity influence influenza virus antigenic clustering

scientific article published on 03 July 2013
Extortion and cooperation in the Prisoner's Dilemma

scientific article
Genome landscapes and bacteriophage codon usage

scientific article
Identifying signatures of selection in genetic time series

scientific article
Coordinated Evolution of Influenza A Surface Proteins

scientific article
Young proteins experience more variable selection pressures than old proteins

scientific article
Collapse of cooperation in evolving games

scientific article published on November 24, 2014
Persistent expression of Pax3 in the neural crest causes cleft palate and defective osteogenesis in mice

scientific article published on June 2008
Assessing the determinants of evolutionary rates in the presence of noise

scientific article published on 07 March 2007
The structure of genealogies in the presence of purifying selection: a fitness-class coalescent

scientific article published on 30 November 2011
The role of epistasis in protein evolution.

scientific article published in May 2013
Inferring fitness landscapes by regression produces biased estimates of epistasis.

scientific article
Matrix dimensions bias demographic inferences: implications for comparative plant demography

scientific article published on 22 October 2010
The polymorphism frequency spectrum of finitely many sites under selection

scientific article published on 14 October 2008
Age-Correlated Gene Expression in Normal and Neurodegenerative Human Brain Tissues

scientific article (publication date: 29 September 2010)
Some consequences of demographic stochasticity in population genetics

scientific article published on 10 May 2010
Codon usage and selection on proteins

scientific article published on 14 October 2006
Transcriptional regulation is only half the story

scientific article published on August 2010
Inferring the shape of global epistasis

scientific article

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