Search filters

List of works by Joshua B. Plotkin

A machine-vision approach for automated pain measurement at millisecond timescales

scientific article published on 06 August 2020

A statistical theory for sampling species abundances

scientific article

Absorption and fixation times for neutral and quasi-neutral populations with density dependence

scientific article published on 18 September 2008

Age-Correlated Gene Expression in Normal and Neurodegenerative Human Brain Tissues ⬇️

scientific article (publication date: 29 September 2010)

Aging and gene expression in the primate brain

scientific article published in September 2005

Ancel (2000) on the Baldwin effect

scientific article published on 25 September 2019

Assessing the determinants of evolutionary rates in the presence of noise

scientific article published on 07 March 2007

Assortative mating can impede or facilitate fixation of underdominant alleles

scientific article published on 3 August 2016

Cell biology. The lives of proteins

scientific article published on February 2011

Cluster analysis of spatial patterns in Malaysian tree species

scientific article

Coding-sequence determinants of gene expression in Escherichia coli

scientific article

Codon bias and frequency-dependent selection on the hemagglutinin epitopes of influenza A virus ⬇️

scientific article published on May 14, 2003

Codon usage and selection on proteins

scientific article published on 14 October 2006

Codon usage influences fitness through RNA toxicity

article published in the Proceedings of the National Academy of Sciences of the United States of America

Codon usage influences fitness through RNA toxicity

Collapse of cooperation in evolving games ⬇️

scientific article

Consequences of defaunation for a tropical tree community ⬇️

scientific article published on March 12, 2013

Contingency and entrenchment in protein evolution under purifying selection ⬇️

scientific article

Coordinated Evolution of Influenza A Surface Proteins

scientific article

Detecting epistasis from an ensemble of adapting populations.

scientific article published on 21 July 2015

Detecting evolutionary forces in language change.

scientific article published in November 2017

Detecting selection using a single genome sequence of M. tuberculosis and P. falciparum

scientific article published in April 2004

Directionality in the evolution of influenza A haemagglutinin

scientific article published on 01 November 2008

Directionality in the evolution of influenza A haemagglutinin.

scientific article

Dynamical resonance can account for seasonality of influenza epidemics

scientific article

Dynamics of Neutral and Selected Alleles When the Offspring Distribution Is Skewed ⬇️

scientific article published on June 1, 2012

Environmental robustness and the adaptability of populations

scientific article published on 11 January 2012

Epistasis Increases the Rate of Conditionally Neutral Substitution in an Adapting Population ⬇️

scientific article published on February 1, 2011

Epistasis and the Dynamics of Reversion in Molecular Evolution

scientific article published on 18 May 2016

Estimating selection pressures from limited comparative data

scientific article published on 05 June 2006

Evolution and persistence of influenza A and other diseases

scientific article published in March 2004

Evolution of empathetic moral evaluation

scientific article published on 09 April 2019

Evolution, safety, and highly pathogenic influenza viruses

scientific article

Evolution. In evolution, the sum is less than its parts

scientific article published on 01 June 2011

Evolutionary Rescue Through Partly Heritable Phenotypic Variability

article

Evolutionary consequences of behavioral diversity.

scientific article published on 24 October 2016

Evolutionary games with environmental feedbacks

scientific article published on 14 February 2020

Experimentally guided models reveal replication principles that shape the mutation distribution of RNA viruses

scientific article

Explosive radiation of a bacterial species group

scientific article (publication date: August 2012)

Extortion and cooperation in the Prisoner's Dilemma

scientific article

Formal properties of the probability of fixation: identities, inequalities and approximations

scientific article published on 20 November 2014

From extortion to generosity, evolution in the Iterated Prisoner's Dilemma.

scientific article published on 03 September 2013

Generalized population models and the nature of genetic drift ⬇️

scientific article published on June 28, 2011

Genome landscapes and bacteriophage codon usage

scientific article

Genome-Wide Survey of Natural Selection on Functional, Structural, and Network Properties of Polymorphic Sites in Saccharomyces paradoxus ⬇️

scientific article published on April 3, 2011

Genome-wide analysis of natural selection on human cis-elements

scientific article

Hemagglutinin sequence clusters and the antigenic evolution of influenza A virus

scientific article

Host-Pathogen Coevolution and the Emergence of Broadly Neutralizing Antibodies in Chronic Infections

scientific article published on 21 July 2016

Identifying signatures of selection in genetic time series

scientific article

Immune history shapes specificity of pandemic H1N1 influenza antibody responses.

scientific article

Improved Ribosome-Footprint and mRNA Measurements Provide Insights into Dynamics and Regulation of Yeast Translation.

scientific article published on 10 February 2016

Inferring fitness landscapes by regression produces biased estimates of epistasis. ⬇️

scientific article

Inferring the Dynamics of Diversification: A Coalescent Approach ⬇️

scientific article (publication date: 28 September 2010)

Inferring the shape of global epistasis.

scientific article

Isolation and characterization of adenoviruses persistently shed from the gastrointestinal tract of non-human primates

scientific article published on 3 July 2009

Matrix dimensions bias demographic inferences: implications for comparative plant demography

scientific article published on 22 October 2010

Molecular evolution: Hidden diversity sparks adaptation

scientific article published on 01 June 2011

Molecular evolution: No escape from the tangled bank

scientific article published on 18 October 2017

Moonshots, investment booms, and selection bias in the transmission of cultural traits

scientific article published in 2021

Mortality due to influenza in the United States--an annualized regression approach using multiple-cause mortality data

scientific article

Mutational robustness can facilitate adaptation

scientific article

On the accessibility of adaptive phenotypes of a bacterial metabolic network

scientific article

Persistent expression of Pax3 in the neural crest causes cleft palate and defective osteogenesis in mice

scientific article published on June 2008

Phenotypic Plasticity Promotes Balanced Polymorphism in Periodic Environments by a Genomic Storage Effect

scientific article published on 08 February 2016

Phenotypic plasticity promotes recombination and gene clustering in periodic environments

scientific article published on 11 December 2017

Prevalence of epistasis in the evolution of influenza A surface proteins

scientific article

Rate-limiting steps in yeast protein translation

scientific article published on June 2013

Rational spatio-temporal strategies for controlling a Chagas disease vector in urban environments

scientific article

Reconciling molecular phylogenies with the fossil record ⬇️

scientific article (publication date: 27 September 2011)

Reconstructing influenza incidence by deconvolution of daily mortality time series

scholarly article

Redundancy, antiredundancy, and the robustness of genomes

scientific article

Regulated CRISPR Modules Exploit a Dual Defense Strategy of Restriction and Abortive Infection in a Model of Prokaryote-Phage Coevolution

scientific article published on 6 November 2015

Reinforcement of pre-zygotic isolation and karyotype evolution in Agrodiaetus butterflies

scientific article (publication date: 21 July 2005)

Retracing micro-epidemics of Chagas disease using epicenter regression

scientific article (publication date: September 2011)

SAMPLING THE SPECIES COMPOSITION OF A LANDSCAPE

article

Sampling the Species Composition of a Landscape

article

Seed dispersal and spatial pattern in tropical trees

scientific article (publication date: October 2006)

Selection biases the prevalence and type of epistasis along adaptive trajectories

scientific article published on 4 July 2013

Selection for Protein Stability Enriches for Epistatic Interactions

article

Single hemagglutinin mutations that alter both antigenicity and receptor binding avidity influence influenza virus antigenic clustering

scientific article published on 03 July 2013

Small groups and long memories promote cooperation

scientific article

Some consequences of demographic stochasticity in population genetics

scientific article published on 10 May 2010

Spatial patterns in discordant diagnostic test results for Chagas disease: links to transmission hotspots

scientific article published on April 2009

Spatial structure and genetic diversity of three tropical tree species with different habitat preferences within a natural forest

article

Structure and age jointly influence rates of protein evolution

scientific article

Synonymous but not the same: the causes and consequences of codon bias

scientific article

The different effects of apoptosis and DNA repair on tumorigenesis

scientific article published in February 2002

The dynamics of adaptation on correlated fitness landscapes

scientific article published on 26 October 2009

The equilibrium allele frequency distribution for a population with reproductive skew

scientific article

The evolution of complex gene regulation by low-specificity binding sites

scientific article published on 14 August 2013

The evolution of genetic architectures underlying quantitative traits.

scientific article

The evolutionary advantage of heritable phenotypic heterogeneity

scientific article

The inevitability of unconditionally deleterious substitutions during adaptation

scientific article published on 04 March 2014

The polymorphism frequency spectrum of finitely many sites under selection

scientific article published on 14 October 2008

The population genetics of cooperative gene regulation

scientific article published on 6 September 2012

The population genetics of dN/dS ⬇️

scientific article

The role of epistasis in protein evolution.

scientific article published in May 2013

The structure of allelic diversity in the presence of purifying selection ⬇️

scientific article published on December 16, 2011

The structure of genealogies in the presence of purifying selection: a fitness-class coalescent

scientific article published on 30 November 2011

Tissue-specific codon usage and the expression of human genes

scholarly article

Transcriptional errors and the drift barrier

scientific article published on 10 March 2016

Transcriptional regulation is only half the story

scientific article published on August 2010

Using protein complexes to predict phenotypic effects of gene mutation

scientific article

Vaccinating to protect a vulnerable subpopulation

scientific article

Variations in the progranulin gene affect global gene expression in frontotemporal lobar degeneration

scientific article

Weak 5'-mRNA secondary structures in short eukaryotic genes.

scientific article

Why transcription factor binding sites are ten nucleotides long.

scientific article

Young proteins experience more variable selection pressures than old proteins

scientific article

riboviz: analysis and visualization of ribosome profiling datasets.

scientific article published on 25 October 2017

Paulina is supported by:

About Paulina

Help