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List of works by Joshua B. Plotkin

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Explosive radiation of a bacterial species group

scientific article (publication date: August 2012)
Dynamics of Neutral and Selected Alleles When the Offspring Distribution Is Skewed

scientific article published on June 1, 2012
Evolution, safety, and highly pathogenic influenza viruses

scientific article
Retracing micro-epidemics of Chagas disease using epicenter regression

scientific article (publication date: September 2011)
Epistasis and the Dynamics of Reversion in Molecular Evolution

scientific article published on 18 May 2016
Genome-wide analysis of natural selection on human cis-elements

scientific article
Generalized population models and the nature of genetic drift

scientific article published on June 28, 2011
Evolution and persistence of influenza A and other diseases

scientific article published in March 2004
Directionality in the evolution of influenza A haemagglutinin

scientific article published on 01 November 2008
Reconstructing influenza incidence by deconvolution of daily mortality time series

scholarly article
Spatial patterns in discordant diagnostic test results for Chagas disease: links to transmission hotspots

scientific article published on April 2009
The evolution of genetic architectures underlying quantitative traits

scientific article published on August 28, 2013
Cluster analysis of spatial patterns in Malaysian tree species

scientific article
Formal properties of the probability of fixation: Identities, inequalities and approximations

scientific article published on November 20, 2014
Genome-Wide Survey of Natural Selection on Functional, Structural, and Network Properties of Polymorphic Sites in Saccharomyces paradoxus

scientific article published on April 3, 2011
Experimentally guided models reveal replication principles that shape the mutation distribution of RNA viruses

scientific article published on January 30, 2015
Weak 5'-mRNA secondary structures in short eukaryotic genes.

scientific article
Epistasis Increases the Rate of Conditionally Neutral Substitution in an Adapting Population

scientific article published on February 1, 2011
riboviz: analysis and visualization of ribosome profiling datasets.

scientific article published on 25 October 2017
Structure and age jointly influence rates of protein evolution

scientific article
Detecting epistasis from an ensemble of adapting populations.

scientific article published on 21 July 2015
Host-Pathogen Coevolution and the Emergence of Broadly Neutralizing Antibodies in Chronic Infections

scientific article published on 21 July 2016
Small groups and long memories promote cooperation

scientific article
Rational spatio-temporal strategies for controlling a Chagas disease vector in urban environments

scientific article
Codon usage influences fitness through RNA toxicity

article published in the Proceedings of the National Academy of Sciences of the United States of America
The evolution of complex gene regulation by low-specificity binding sites

scientific article published on 14 August 2013
Regulated CRISPR Modules Exploit a Dual Defense Strategy of Restriction and Abortive Infection in a Model of Prokaryote-Phage Coevolution

scientific article published on November 6, 2015
Phenotypic Plasticity Promotes Balanced Polymorphism in Periodic Environments by a Genomic Storage Effect

scientific article published on 08 February 2016
The different effects of apoptosis and DNA repair on tumorigenesis

scientific article published in February 2002
Detecting evolutionary forces in language change.

scientific article published in November 2017
On the accessibility of adaptive phenotypes of a bacterial metabolic network

scientific article
The inevitability of unconditionally deleterious substitutions during adaptation

scientific article published on 04 March 2014
Evolution. In evolution, the sum is less than its parts

scientific article published on 01 June 2011
Spatial structure and genetic diversity of three tropical tree species with different habitat preferences within a natural forest

article
Estimating selection pressures from limited comparative data

scientific article published on 05 June 2006
Absorption and fixation times for neutral and quasi-neutral populations with density dependence

scientific article published on 18 September 2008
Cell biology. The lives of proteins

scientific article published on February 2011
Evolutionary consequences of behavioral diversity.

scientific article published on 24 October 2016
The population genetics of cooperative gene regulation

scientific article published on 6 September 2012
Selection for Protein Stability Enriches for Epistatic Interactions

article
Transcriptional errors and the drift barrier

scientific article published on March 10, 2016
Phenotypic plasticity promotes recombination and gene clustering in periodic environments

scientific article published on 11 December 2017
Molecular evolution: Hidden diversity sparks adaptation

scientific article published on 01 June 2011
SAMPLING THE SPECIES COMPOSITION OF A LANDSCAPE

article
Evolution of empathetic moral evaluation

scientific article published on 09 April 2019
The evolutionary advantage of heritable phenotypic heterogeneity

scientific article
The structure of allelic diversity in the presence of purifying selection

scientific article published on December 16, 2011
Molecular evolution: No escape from the tangled bank

scientific article published on 18 October 2017
The equilibrium allele frequency distribution for a population with reproductive skew

scientific article
Directionality in the evolution of influenza A haemagglutinin

scientific article

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