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List of works by Supratim Mukherjee

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Microbial species delineation using whole genome sequences

scientific article
Genomes OnLine Database (GOLD) v.6: data updates and feature enhancements

scientific article (publication date: 4 January 2017)
1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life

scientific article published on 12 June 2017
Large-scale contamination of microbial isolate genomes by Illumina PhiX control

scientific article published on 30 March 2015
Genome-Based Taxonomic Classification of Bacteroidetes

scientific article (publication date: 2016)
Genome and Transcriptome of Clostridium phytofermentans, Catalyst for the Direct Conversion of Plant Feedstocks to Fuels

scientific article published on 2 June 2015
The United States Culture Collection Network (USCCN): Enhancing Microbial Genomics Research through Living Microbe Culture Collections.

scientific article
High quality draft genome sequence and analysis of Pontibacter roseus type strain SRC-1(T) (DSM 17521(T)) isolated from muddy waters of a drainage system in Chandigarh, India

scientific article published on 9 February 2015
A genomic catalog of Earth's microbiomes

scientific article published on 09 November 2020
Draft Genome Sequence of Methylocapsa palsarum NE2T, an Obligate Methanotroph from Subarctic Soil

scientific article
Population level analysis of evolved mutations underlying improvements in plant hemicellulose and cellulose fermentation by Clostridium phytofermentans

scientific article published on 22 January 2014
Permanent Draft Genome Sequence of Desulfurococcus amylolyticus Strain Z-533T, a Peptide and Starch Degrader Isolated from Thermal Springs in the Kamchatka Peninsula and Kunashir Island, Russia

scientific article
Publisher Correction: A genomic catalog of Earth's microbiomes

scientific article published on 18 November 2020
Erratum: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life

scholarly article published in Nature Biotechnology
Corrigendum: Genome-Based Taxonomic Classification of Bacteroidetes

scientific article published on 21 February 2018
Author Correction: A genomic catalog of Earth's microbiomes

correction of a scholarly article
Microbial metagenomes and metatranscriptomes during a coastal phytoplankton bloom

scientific article published on 22 July 2019
Genome Sequence of Roseovarius sp. Strain MCTG156(2b) Isolated from a Phytoplankton Net Trawl on the Scottish West Coast

scientific article published on 31 August 2017
Draft genome sequence of Marinobacterium rhizophilum CL-YJ9T (DSM 18822T), isolated from the rhizosphere of the coastal tidal-flat plant Suaeda japonica

scientific article
Complete Genome Sequence of Nitrosomonas cryotolerans ATCC 49181, a Phylogenetically Distinct Ammonia-Oxidizing Bacterium Isolated from Arctic Waters

scientific article published on 16 March 2017
Metatranscriptomes of California grassland soil microbial communities in response to rewetting

scientific article published in 2024
Metagenomes and metatranscriptomes from boreal potential and actual acid sulfate soil materials

scientific article published on 16 October 2019
A Practical Approach to Using the Genomic Standards Consortium MIxS Reporting Standard for Comparative Genomics and Metagenomics

Microbial Metagenomes Across a Complete Phytoplankton Bloom Cycle: High-Resolution Sampling Every 4 Hours Over 22 Days

scientific article published on 22 November 2024
Draft genome sequence of Actinotignum schaalii DSM 15541T: Genetic insights into the lifestyle, cell fitness and virulence

scientific article
Microbiomes of Velloziaceae from phosphorus-impoverished soils of the campos rupestres, a biodiversity hotspot

scientific article published on 31 July 2019
The DOE JGI Metagenome Workflow

scientific article published on 2 October 2020
Genome Sequence of Oceanicola sp. Strain MCTG156(1a), Isolated from a Scottish Coastal Phytoplankton Net Sample

scientific article published on 10 August 2017
The biogeographic differentiation of algal microbiomes in the upper ocean from pole to pole

scientific article published in 2021
Complete Genome Sequence for sp. Strain OR53 and Draft Genome Sequence for sp. Strain OR43, Two Bacteria Tolerant to Uranium

IMG/VR v4: an expanded database of uncultivated virus genomes within a framework of extensive functional, taxonomic, and ecological metadata

scientific article published in 2022
Standardized naming of microbiome samples in Genomes OnLine Database

scientific article published in 2023

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