List of works - Rengul Cetin-Atalay

3-Propionyl-thiazolidine-4-carboxylic acid ethyl esters: a family of antiproliferative thiazolidines

article

A monoclonal antibody against DNA binding helix of p53 protein

scientific article published on 01 March 2001

A novel thiazolidine compound induces caspase-9 dependent apoptosis in cancer cells.

scientific article

A signal transduction score flow algorithm for cyclic cellular pathway analysis, which combines transcriptome and ChIP-seq data.

scientific article

A small library of chalcones induce liver cancer cell death through Akt phosphorylation inhibition

scientific article published on 16 July 2020

Acquired tolerance of hepatocellular carcinoma cells to selenium deficiency: a selective survival mechanism? ⬇️

scientific article published on October 15, 2003

An ontology for collaborative construction and analysis of cellular pathways.

scientific article published on February 2004

Attributed relational graphs for cell nucleus segmentation in fluorescence microscopy images

scientific article published on 28 March 2013

Automated cancer stem cell recognition in H and E stained tissue using convolutional neural networks and color deconvolution

scholarly article published 1 March 2017

CD8 lineage-specific regulation of interleukin-7 receptor expression by the transcriptional repressor Gfi1.

scientific article

Cancer Cell Cytotoxicities of 1-(4-Substitutedbenzoyl)-4-(4-chlorobenzhydryl)piperazine Derivatives ⬇️

scientific article published on June 28, 2012

Carcinoma cell line discrimination in microscopic images using unbalanced wavelets

ChemInform Abstract: Design and Cytotoxic Evaluation of Some 1-Aryl-3-isopropylamino-1-propanone Hydrochlorides Towards Human Huh-7 Hepatoma Cells

Cytotoxic activities of some benzothiazole-piperazine derivatives.

scientific article

Cytotoxic activities of some novel benzhydrylpiperazine derivatives ⬇️

scientific article published on February 11, 2013

DEEPScreen: high performance drug-target interaction prediction with convolutional neural networks using 2-D structural compound representations

scientific article published on 08 January 2020

DEEPred: Automated Protein Function Prediction with Multi-task Feed-forward Deep Neural Networks

scientific article published on 14 May 2019

Data Sources and Computational Approaches for Generating Models of Gene Regulatory Networks

article

Development of a novel zebrafish xenograft model in ache mutants using liver cancer cell lines.

scientific article

Diagnostic Assessment of Deep Learning Algorithms for Detection of Lymph Node Metastases in Women With Breast Cancer.

scientific article published in December 2017

Differential alteration of IL-8 in liver cancer stem cell enrichment in response to PI3K/Akt/mTOR inhibitors and sorafenib

Drug Repurposing Approach to Identify Candidate Drug Molecules for Hepatocellular Carcinoma

scientific article published in 2024

ECPred: a tool for the prediction of the enzymatic functions of protein sequences based on the EC nomenclature

scholarly article by Alperen Dalkiran published in September 2018

G-Network Modelling Based Abnormal Pathway Detection in Gene Regulatory Networks

article

GOPred: GO molecular function prediction by combined classifiers

scientific article

Genome-wide transcriptional reorganization associated with senescence-to-immortality switch during human hepatocellular carcinogenesis

scientific article

Identification of novel reference genes based on MeSH categories ⬇️

scientific article

Image classification of human carcinoma cells using complex wavelet-based covariance descriptors

scientific article

Implicit motif distribution based hybrid computational kernel for sequence classification.

scientific article

Inhibition of Akt signaling in hepatoma cells induces apoptotic cell death independent of Akt activation status.

scientific article published on 14 July 2010

Iterative h-minima-based marker-controlled watershed for cell nucleus segmentation

scientific article published on 4 March 2016

Large-scale automated function prediction of protein sequences and an experimental case study validation on PTEN transcript variants.

scientific article published on 3 November 2017

Liver Cancer, Molecular Biology of

scholarly article by Mehmet Ozturk published in September 2006

Liver cancer cells are sensitive to Lanatoside C induced cell death independent of their PTEN status

scientific article published on 12 December 2015

Molecular characterization of a full genome Turkish hepatitis C virus 1b isolate (HCV-TR1): a predominant viral form in Turkey.

scientific article published on October 2002

Near-IR absorbing BODIPY derivatives as glutathione-activated photosensitizers for selective photodynamic action

scientific article

Novel triazolothiadiazines act as potent anticancer agents in liver cancer cells through Akt and ASK-1 proteins.

scientific article published on 8 January 2016

Nuclear exclusion of p33ING1b tumor suppressor protein: explored in HCC cells using a new highly specific antibody

scientific article

PATZ1 Is a DNA Damage-Responsive Transcription Factor That Inhibits p53 Function

scientific article published on 09 March 2015

Pharmacophore modeling and virtual screening studies to identify novel selective SIRT2 inhibitors

scientific article published on 05 March 2019

Phase and TV Based Convex Sets for Blind Deconvolution of Microscopic Images ⬇️

Protein domain-based prediction of drug/compound-target interactions and experimental validation on LIM kinases

scientific article published on 29 November 2021

Quinoides and VEGFR2 TKIs influence the fate of hepatocellular carcinoma and its cancer stem cells

Recent applications of deep learning and machine intelligence on in silico drug discovery: methods, tools and databases

scientific article published on 01 September 2019

Reprogramming of replicative senescence in hepatocellular carcinoma-derived cells.

scholarly article

Retinoid N-(1H-benzo[d]imidazol-2-yl)-5,5,8,8-tetramethyl-5,6,7,8-tetrahydronaphthalene-2-carboxamide induces p21-dependent senescence in breast cancer cells

scientific article published on 17 February 2016

Short time series microarray data analysis and biological annotation

Smart markers for watershed-based cell segmentation

scientific article

Special issue on microscopic image processing

Subsequence-based feature map for protein function classification.

scientific article published on 15 December 2007

Synthesis and biological evaluation of novel pyrazolic chalcone derivatives as novel hepatocellular carcinoma therapeutics

scientific article published on 10 February 2017

Synthesis and cytotoxic activity of novel 3-methyl-1-[(4-substitutedpiperazin-1-yl)methyl]-1H-indole derivatives.

scientific article

Synthesis and cytotoxicity studies of novel benzhydrylpiperazine carboxamide and thioamide derivatives

scientific article published on 8 February 2013

Synthesis of 3-aroyl-4-aryl-1-isopropylamino-4-piperidinols and evaluation of the cytotoxicities of the compounds against human hepatoma and breast cancer cell lines

scientific article published on 8 September 2014

Synthesis of Novel 6-(4-Substituted piperazine-1-yl)-9-(β-d-ribofuranosyl)purine Derivatives, Which Lead to Senescence-Induced Cell Death in Liver Cancer Cells ⬇️

scientific article published on March 27, 2012

Synthesis of Some Substituted 6-Phenyl Purine Analogues and Their Biological Evaluation as Cytotoxic Agents

scientific article published in September 2017

Synthesis of new N,N'-bis[1-aryl-3-(piperidine-1-yl)propylidene]hydrazine dihydrochlorides and evaluation of their cytotoxicity against human hepatoma and breast cancer cells

scientific article published on 16 July 2013

Synthesis of new derivatives of boehmeriasin A and their biological evaluation in liver cancer

scientific article published on 24 January 2019

Synthesis of novel 6-substituted amino-9-(β-d-ribofuranosyl)purine analogs and their bioactivities on human epithelial cancer cells

scientific article published on 2 January 2018

Synthesis of novel substituted purine derivatives and identification of the cell death mechanism

scientific article

Synthesis, anticancer activities and molecular modeling studies of novel indole retinoid derivatives.

scientific article

Synthesis, anticancer activity, toxicity evaluation and molecular docking studies of novel phenylaminopyrimidine-(thio)urea hybrids as potential kinase inhibitors

scientific article published on 12 December 2018

Targeting PI3K/Akt/mTOR Pathway Identifies Differential Expression and Functional Role of IL8 in Liver Cancer Stem Cell Enrichment

scientific article published on 22 August 2019

The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens

scientific article published on 19 November 2019

The PI3K/AKT/mTOR interactive pathway

scientific article published in July 2015

The design and cytotoxic evaluation of some 1-aryl-3-isopropylamino-1-propanone hydrochlorides towards human Huh-7 hepatoma cells

scientific article published on 14 February 2011

Transcriptome profiles associated with selenium-deficiency-dependent oxidative stress identify potential diagnostic and therapeutic targets in liver cancer cells

scientific article published on 20 April 2021

Ynamide Click chemistry in development of triazole VEGFR2 TK modulators

scientific article published on 8 August 2015

p53 mutations as fingerprints of environmental carcinogens

article published in 2000

List of works by Rengul Cetin-Atalay

3-Propionyl-thiazolidine-4-carboxylic acid ethyl esters: a family of antiproliferative thiazolidines

A monoclonal antibody against DNA binding helix of p53 protein

A novel thiazolidine compound induces caspase-9 dependent apoptosis in cancer cells.

A signal transduction score flow algorithm for cyclic cellular pathway analysis, which combines transcriptome and ChIP-seq data.

A small library of chalcones induce liver cancer cell death through Akt phosphorylation inhibition

Acquired tolerance of hepatocellular carcinoma cells to selenium deficiency: a selective survival mechanism? ⬇️

An ontology for collaborative construction and analysis of cellular pathways.

Attributed relational graphs for cell nucleus segmentation in fluorescence microscopy images

Automated cancer stem cell recognition in H and E stained tissue using convolutional neural networks and color deconvolution

CD8 lineage-specific regulation of interleukin-7 receptor expression by the transcriptional repressor Gfi1.

Cancer Cell Cytotoxicities of 1-(4-Substitutedbenzoyl)-4-(4-chlorobenzhydryl)piperazine Derivatives ⬇️

Carcinoma cell line discrimination in microscopic images using unbalanced wavelets

ChemInform Abstract: Design and Cytotoxic Evaluation of Some 1-Aryl-3-isopropylamino-1-propanone Hydrochlorides Towards Human Huh-7 Hepatoma Cells

Cytotoxic activities of some benzothiazole-piperazine derivatives.

Cytotoxic activities of some novel benzhydrylpiperazine derivatives ⬇️

DEEPScreen: high performance drug-target interaction prediction with convolutional neural networks using 2-D structural compound representations

DEEPred: Automated Protein Function Prediction with Multi-task Feed-forward Deep Neural Networks

Data Sources and Computational Approaches for Generating Models of Gene Regulatory Networks

Development of a novel zebrafish xenograft model in ache mutants using liver cancer cell lines.

Diagnostic Assessment of Deep Learning Algorithms for Detection of Lymph Node Metastases in Women With Breast Cancer.

Differential alteration of IL-8 in liver cancer stem cell enrichment in response to PI3K/Akt/mTOR inhibitors and sorafenib

Drug Repurposing Approach to Identify Candidate Drug Molecules for Hepatocellular Carcinoma

ECPred: a tool for the prediction of the enzymatic functions of protein sequences based on the EC nomenclature

G-Network Modelling Based Abnormal Pathway Detection in Gene Regulatory Networks

GOPred: GO molecular function prediction by combined classifiers

Genome-wide transcriptional reorganization associated with senescence-to-immortality switch during human hepatocellular carcinogenesis

Identification of novel reference genes based on MeSH categories ⬇️

Image classification of human carcinoma cells using complex wavelet-based covariance descriptors

Implicit motif distribution based hybrid computational kernel for sequence classification.

Inhibition of Akt signaling in hepatoma cells induces apoptotic cell death independent of Akt activation status.

Iterative h-minima-based marker-controlled watershed for cell nucleus segmentation

Large-scale automated function prediction of protein sequences and an experimental case study validation on PTEN transcript variants.

Liver Cancer, Molecular Biology of

Liver cancer cells are sensitive to Lanatoside C induced cell death independent of their PTEN status

Molecular characterization of a full genome Turkish hepatitis C virus 1b isolate (HCV-TR1): a predominant viral form in Turkey.

Near-IR absorbing BODIPY derivatives as glutathione-activated photosensitizers for selective photodynamic action

Novel triazolothiadiazines act as potent anticancer agents in liver cancer cells through Akt and ASK-1 proteins.

Nuclear exclusion of p33ING1b tumor suppressor protein: explored in HCC cells using a new highly specific antibody

PATZ1 Is a DNA Damage-Responsive Transcription Factor That Inhibits p53 Function

Pharmacophore modeling and virtual screening studies to identify novel selective SIRT2 inhibitors

Phase and TV Based Convex Sets for Blind Deconvolution of Microscopic Images ⬇️

Protein domain-based prediction of drug/compound-target interactions and experimental validation on LIM kinases

Quinoides and VEGFR2 TKIs influence the fate of hepatocellular carcinoma and its cancer stem cells

Recent applications of deep learning and machine intelligence on in silico drug discovery: methods, tools and databases

Reprogramming of replicative senescence in hepatocellular carcinoma-derived cells.

Retinoid N-(1H-benzo[d]imidazol-2-yl)-5,5,8,8-tetramethyl-5,6,7,8-tetrahydronaphthalene-2-carboxamide induces p21-dependent senescence in breast cancer cells

Short time series microarray data analysis and biological annotation

Smart markers for watershed-based cell segmentation

Special issue on microscopic image processing

Subsequence-based feature map for protein function classification.

Synthesis and biological evaluation of novel pyrazolic chalcone derivatives as novel hepatocellular carcinoma therapeutics

Synthesis and cytotoxic activity of novel 3-methyl-1-[(4-substitutedpiperazin-1-yl)methyl]-1H-indole derivatives.

Synthesis and cytotoxicity studies of novel benzhydrylpiperazine carboxamide and thioamide derivatives

Synthesis of 3-aroyl-4-aryl-1-isopropylamino-4-piperidinols and evaluation of the cytotoxicities of the compounds against human hepatoma and breast cancer cell lines

Synthesis of Novel 6-(4-Substituted piperazine-1-yl)-9-(β-d-ribofuranosyl)purine Derivatives, Which Lead to Senescence-Induced Cell Death in Liver Cancer Cells ⬇️

Synthesis of Some Substituted 6-Phenyl Purine Analogues and Their Biological Evaluation as Cytotoxic Agents

Synthesis of new N,N'-bis[1-aryl-3-(piperidine-1-yl)propylidene]hydrazine dihydrochlorides and evaluation of their cytotoxicity against human hepatoma and breast cancer cells

Synthesis of new derivatives of boehmeriasin A and their biological evaluation in liver cancer

Synthesis of novel 6-substituted amino-9-(β-d-ribofuranosyl)purine analogs and their bioactivities on human epithelial cancer cells

Synthesis of novel substituted purine derivatives and identification of the cell death mechanism

Synthesis, anticancer activities and molecular modeling studies of novel indole retinoid derivatives.

Synthesis, anticancer activity, toxicity evaluation and molecular docking studies of novel phenylaminopyrimidine-(thio)urea hybrids as potential kinase inhibitors

Targeting PI3K/Akt/mTOR Pathway Identifies Differential Expression and Functional Role of IL8 in Liver Cancer Stem Cell Enrichment

The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens

The PI3K/AKT/mTOR interactive pathway

The design and cytotoxic evaluation of some 1-aryl-3-isopropylamino-1-propanone hydrochlorides towards human Huh-7 hepatoma cells

Transcriptome profiles associated with selenium-deficiency-dependent oxidative stress identify potential diagnostic and therapeutic targets in liver cancer cells

Ynamide Click chemistry in development of triazole VEGFR2 TK modulators

p53 mutations as fingerprints of environmental carcinogens