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List of works by Damiano Piovesan

3D-Beacons: decreasing the gap between protein sequences and structures through a federated network of protein structure data resources

scientific article published in 2022

A community proposal to integrate proteomics activities in ELIXIR

scientific article

A comprehensive assessment of long intrinsic protein disorder from the DisProt database.

scientific article published on 18 September 2017

A large-scale evaluation of computational protein function prediction

scientific article

A novel approach to investigate the evolution of structured tandem repeat protein families by exon duplication

scientific article published on 04 September 2020

APICURON: a database to credit and acknowledge the work of biocurators

An expanded evaluation of protein function prediction methods shows an improvement in accuracy ⬇️

scientific article

An intrinsically disordered proteins community for ELIXIR

scientific article published on 15 October 2019

Assessing predictors for new post translational modification sites: A case study on hydroxylation

scientific article published on 22 June 2020

BAR-PLUS: the Bologna Annotation Resource Plus for functional and structural annotation of protein sequences

scientific article

DisProt 7.0: a major update of the database of disordered proteins

scientific article published on 13 December 2016

DisProt 7.0: a major update of the database of disordered proteins.

scientific article

DisProt: intrinsic protein disorder annotation in 2020

scientific article published on 01 January 2020

Experimentally Determined Long Intrinsically Disordered Protein Regions Are Now Abundant in the Protein Data Bank

scientific article published on 24 June 2020

Exploring Manually Curated Annotations of Intrinsically Disordered Proteins with DisProt

scientific article published on 01 December 2020

Exploring Protein Intrinsic Disorder with MobiDB

scientific article published on 01 January 2020

Extended and Robust Protein Sequence Annotation over Conservative Nonhierarchical Clusters

FELLS: fast estimator of latent local structure.

scientific article

FFPred 2.0: improved homology-independent prediction of gene ontology terms for eukaryotic protein sequences.

scientific article

FuzDB: a new phase in understanding fuzzy interactions

scientific article published on 01 January 2022

How to inherit statistically validated annotation within BAR+ protein clusters

scientific article published on 28 February 2013

INGA 2.0: improving protein function prediction for the dark proteome

scientific article published on 01 July 2019

INGA: protein function prediction combining interaction networks, domain assignments and sequence similarity.

scientific article published on 27 May 2015

Identification of repetitive units in protein structures with ReUPred

scientific article published on 22 February 2016

InterPro in 2017-beyond protein family and domain annotations

scientific article

Large-scale analysis of intrinsic disorder flavors and associated functions in the protein sequence universe

scientific article

Machine-Learning Methods to Predict Protein Interaction Sites in Folded Proteins

scholarly article by Castrense Savojardo et al published 2012 in Lecture Notes in Computer Science

Mapping and annotating obesity-related genes in pig and human genomes

scientific article published on January 2014

Mobi 2.0: an improved method to define intrinsic disorder, mobility and linear binding regions in protein structures.

scientific article published on 18 September 2017

MobiDB 3.0: more annotations for intrinsic disorder, conformational diversity and interactions in proteins.

scientific article published on 10 November 2017

MobiDB-lite 3.0: fast consensus annotation of intrinsic disorder flavours in proteins

scientific article published on 16 December 2020

MobiDB-lite: fast and highly specific consensus prediction of intrinsic disorder in proteins

scientific article published on May 2017

MobiDB: intrinsically disordered proteins in 2021

scientific article published on 25 November 2020

PED in 2021: a major update of the protein ensemble database for intrinsically disordered proteins

scientific article published on 10 December 2020

PhytoTypeDB: a database of plant protein inter-cultivar variability and function

article

PlaToLoCo: the first web meta-server for visualization and annotation of low complexity regions in proteins

scientific article published on 18 May 2020

Protein Sequence Annotation by Means of Community Detection

Protein function prediction using guilty by association from interaction networks.

scientific article published on 28 July 2015

RepeatsDB 2.0: improved annotation, classification, search and visualization of repeat protein structures

scientific article published on 29 November 2016

RepeatsDB 2.0: improved annotation, classification, search and visualization of repeat protein structures.

scientific article

RepeatsDB in 2021: improved data and extended classification for protein tandem repeat structures

scientific article published on 25 November 2020

RepeatsDB-lite: a web server for unit annotation of tandem repeat proteins.

scientific article published in July 2018

RepeatsDB: a database of tandem repeat protein structures

scientific article (publication date: 5 December 2013)

SODA: prediction of protein solubility from disorder and aggregation propensity.

scientific article published on 13 May 2017

SUS-BAR: a database of pig proteins with statistically validated structural and functional annotation

scientific article published on 23 September 2013

Simultaneous quantification of protein order and disorder

scientific article published in March 2017

The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens

scientific article published on 19 November 2019

The E3 ubiquitin-protein ligase MDM2 is a novel interactor of the von Hippel-Lindau tumor suppressor

scientific article published on 28 September 2020

The Feature Viewer: A visualization tool for positional annotations on a sequence

scientific article published on 27 January 2020

The Pfam protein families database in 2019

scholarly article by Sara El-Gebali et al published 24 October 2018 in Nucleic Acids Research

The RING 2.0 web server for high quality residue interaction networks

scientific article

The Victor C++ library for protein representation and advanced manipulation

scientific article

The human "magnesome": detecting magnesium binding sites on human proteins

scientific article

Unconventional training for neural network predictions of inter-residue contacts

scientific article published in 2009

VHLdb: A database of von Hippel-Lindau protein interactors and mutations

scientific article published on 11 August 2016

Where differences resemble: sequence-feature analysis in curated databases of intrinsically disordered proteins

scientific article published on 01 January 2018

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