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List of works by Christine Carapito

A Combined N-terminomics and Shotgun Proteomics Approach to Investigate the Responses of Human Cells to Rapamycin and Zinc at the Mitochondrial Level

scientific article published on 15 March 2019

A community proposal to integrate proteomics activities in ELIXIR

scientific article

A tale of two oxidation states: bacterial colonization of arsenic-rich environments

scientific article

An optimized MALDI mass spectrometry method for improved detection of lysine/arginine/histidine free peptides

scientific article

Analysis of aldosterone-induced differential receptor-independent protein patterns using 2D-electrophoresis and mass spectrometry.

scientific article

Bacterial protein signals are associated with Crohn's disease

scientific article

Benchmarking quantitative label-free LC-MS data processing workflows using a complex spiked proteomic standard dataset.

scientific article

Benchmarking sample preparation/digestion protocols reveals tube-gel being a fast and repeatable method for quantitative proteomics.

scientific article published on 17 October 2016

Biodesulfurization Induces Reprogramming of Sulfur Metabolism in Rhodococcus qingshengii IGTS8: Proteomics and Untargeted Metabolomics

scientific article published on 01 September 2021

Characterization of the active bacterial community involved in natural attenuation processes in arsenic-rich creek sediments

scientific article

Cleavable Binary Dyads: Simplifying Data Extraction and Increasing Storage Density in Digital Polymers

scientific article published on 27 April 2018

Comparative expression study of the endo-G protein coupled receptor (GPCR) repertoire in human glioblastoma cancer stem-like cells, U87-MG cells and non malignant cells of neural origin unveils new potential therapeutic targets

scientific article

Computational and Mass-Spectrometry-Based Workflow for the Discovery and Validation of Missing Human Proteins: Application to Chromosomes 2 and 14.

scientific article published on July 2015

Cytosolic Isocitrate Dehydrogenase from Is Regulated by Glutathionylation

scientific article published on 08 January 2019

Data Independent Acquisition Coupled to Visible Laser-Induced Dissociation at 473 nm (DIA-LID) for Peptide-Centric Specific Analysis of Cysteine-Containing Peptide Subset.

scientific article published on 21 February 2018

Detection of prion protein in urine-derived injectable fertility products by a targeted proteomic approach

scientific article published in 2011

Differences in Brachypelma albopilosa (Theraphosidae) hemolymph proteome between subadult and adult females.

scientific article published on 17 August 2010

Differentiation between fresh and frozen-thawed sea bass (Dicentrarchus labrax) fillets using two-dimensional gel electrophoresis

scientific article published on 23 December 2014

Discovery and targeted proteomics on cutaneous biopsies infected by borrelia to investigate lyme disease

scientific article published on 24 February 2015

Doublet N-Terminal Oriented Proteomics for N-Terminomics and Proteolytic Processing Identification.

scientific article

Dual Data-Independent Acquisition Approach Combining Global HCP Profiling and Absolute Quantification of Key Impurities during Bioprocess Development.

scientific article published on 13 December 2017

Electron transfer dissociation in conjunction with collision activation to investigate the Drosophila melanogaster phosphoproteome

scientific article

Enhanced structural and functional genome elucidation of the arsenite-oxidizing strain Herminiimonas arsenicoxydans by proteomics data

scientific article

Extended investigation of tube-gel sample preparation: a versatile and simple choice for high throughput quantitative proteomics.

scientific article

Human SRMAtlas: A Resource of Targeted Assays to Quantify the Complete Human Proteome

scientific article

Identification of genes and proteins involved in the pleiotropic response to arsenic stress in Caenibacter arsenoxydans, a metalloresistant beta-proteobacterium with an unsequenced genome

article

Impact of anatase and rutile titanium dioxide nanoparticles on uptake carriers and efflux pumps in Caco-2 gut epithelial cells

scientific article published on April 2015

Looking for Missing Proteins in the Proteome of Human Spermatozoa: An Update.

scientific article published on 22 July 2016

MS2Rescore: Data-Driven Rescoring Dramatically Boosts Immunopeptide Identification Rates

scientific article published in 2022

MSDA, a proteomics software suite for in-depth Mass Spectrometry Data Analysis using grid computing.

scientific article

Mapping rRNA 2'-O-methylations and identification of C/D snoRNAs in Arabidopsis thaliana plants

scientific article published on 17 February 2021

Mass Spectrometry-Based Sequencing and SRM-Based Quantitation of Two Novel Vitellogenin Isoforms in the Leatherback Sea Turtle (Dermochelys coriacea) ⬇️

scientific article published on July 26, 2013

MetAP1 and MetAP2 drive cell selectivity for a potent anti-cancer agent in synergy, by controlling glutathione redox state

scientific article published on 11 August 2016

N-terminome analysis of the human mitochondrial proteome.

scientific article published on 08 June 2015

N-terminome and proteogenomic analysis of the Methylobacterium extorquens DM4 reference strain for dichloromethane utilization

scientific article published on 19 March 2018

Nuclear proteome analysis of undifferentiated mouse embryonic stem and germ cells

scientific article published in June 2008

Nucleolar Proteome Analysis and Proteasomal Activity Assays Reveal a Link between Nucleolus and 26S Proteasome in A. thaliana.

scientific article

Optimized Sample Preparation and Data Processing of Data-Independent Acquisition Methods for the Robust Quantification of Trace-Level Host Cell Protein Impurities in Antibody Drug Products

scientific article published on 04 October 2020

Ortho-proteogenomics: multiple proteomes investigation through orthology and a new MS-based protocol.

scientific article published on 27 October 2008

ProMetIS, deep phenotyping of mouse models by combined proteomics and metabolomics analysis

scientific article published on 03 December 2021

Proteome analysis of Schizosaccharomyces pombe by two-dimensional gel electrophoresis and mass spectrometry

scientific article published on 01 July 2006

Proteome analysis of plant-virus interactome: comprehensive data for virus multiplication inside their hosts

scientific article

Proteome analysis of the culture environment supporting undifferentiated mouse embryonic stem and germ cell growth

scientific article

Proteomic analysis of grapevine (Vitis vinifera L.) tissues subjected to herbicide stress.

scientific article

Proteomics profiling reveals novel proteins and functions of the plant stigma exudate

scientific article published on 22 October 2013

Rapid impact of phenanthrene and arsenic on bacterial community structure and activities in sand batches.

scientific article published on 5 November 2013

Reproducible quantification of cancer-associated proteins in body fluids using targeted proteomics

scientific article

Spiked proteomic standard dataset for testing label-free quantitative software and statistical methods.

scientific article

Studying the Fate of Tumor Extracellular Vesicles at High Spatiotemporal Resolution Using the Zebrafish Embryo

scientific article published on 07 February 2019

Targeted Proteomics

scientific article published on 01 April 2012

Temporal multiomic modeling reveals a B-cell receptor proliferative program in chronic lymphocytic leukemia

scientific article published on 08 April 2021

Tenascin-C orchestrates an immune suppressive tumor microenvironment in oral squamous cell carcinoma

scientific article published on 14 July 2020

The plant stigma exudate. A biochemically active extracellular environment for pollen germination?

scientific article published on January 2014

The siRNA suppressor RTL1 is redox-regulated through glutathionylation of a conserved cysteine in the double-stranded-RNA-binding domain

scientific article published on 15 September 2017

Titanium dioxide nanoparticle impact and translocation through ex vivo, in vivo and in vitro gut epithelia

scientific article

Trans-Proteomic Pipeline supports and improves analysis of electron transfer dissociation data sets

scientific article

Tube-Gel: A Fast and Effective Sample Preparation Method for High-Throughput Quantitative Proteomics

scientific article published on 01 January 2019

Two proteomic methodologies for defining N-termini of mature human mitochondrial aminoacyl-tRNA synthetases

scientific article published on 25 October 2016

Validating Missing Proteins in Human Sperm Cells by Targeted Mass-Spectrometry- and Antibody-based Methods.

scientific article published on 11 September 2017

Zika virus enhances monocyte adhesion and transmigration favoring viral dissemination to neural cells

scientific article published on 27 September 2019

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