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List of works by Avi Ma'ayan

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Far away from the lamppost

scientific article published on 11 December 2018
A blueprint of cell identity

scientific article published on October 2014
BioJupies: Automated Generation of Interactive Notebooks for RNA-seq Data Analysis in the Cloud

scholarly article published 20 June 2018
Connecting omics signatures of diseases, drugs, and mechanisms of actions with iLINCS

scientific article
Chemokine Signatures of Pathogen-Specific T Cells I: Effector T Cells

scientific article published on 18 September 2020
Publisher's Note: Abstraction for data integration: Fusing mammalian molecular, cellular and phenotype big datasets for better knowledge extraction

scientific article published on October 1, 2015
Temporal proteomic profiling of postnatal human cortical development

scientific article published on 05 December 2018
The COVID-19 Drug and Gene Set Library

scientific article published on 25 July 2020
Endothelial cells instruct liver specification of embryonic stem cell-derived endoderm through endothelial VEGFR2 signaling and endoderm epigenetic modifications

Memory of Divisional History Directs the Continuous Process of Primitive Hematopoietic Lineage Commitment

scientific article published on 17 March 2020
Predicting opioid dependence from electronic health records with machine learning

scientific article published on 29 January 2019
Predicting Lyme Disease From Patients' Peripheral Blood Mononuclear Cells Profiled With RNA-Sequencing

scientific article
Drugmonizome and Drugmonizome-ML: integration and abstraction of small molecule attributes for drug enrichment analysis and machine learning

scholarly article by Eryk Kropiwnicki et al published 31 March 2021 in Database
Elysium: RNA-seq Alignment in the Cloud

scholarly article published 2 August 2018
Connecting Seed Lists of Mammalian Proteins Using Steiner Trees

Systems Analysis Implicates WAVE2 Complex in the Pathogenesis of Developmental Left-Sided Obstructive Heart Defects

scientific article published on 08 April 2020
Gene Set Knowledge Discovery with Enrichr

scientific article published on 01 March 2021
PrismEXP: gene annotation prediction from stratified gene-gene co-expression matrices

scientific article published in 2023
DrugShot: querying biomedical search terms to retrieve prioritized lists of small molecules

scientific article published on 19 February 2022
Making Common Fund data more findable: catalyzing a data ecosystem

scientific article published in January 2022
Drug Gene Budger (DGB): an application for ranking drugs to modulate a specific gene based on transcriptomic signatures

article
List of Contributors

2011 - ENGINEERING A HEMATOPOIETIC STEM CELL NICHE BY REVITALIZING MESENCHYMAL STEM CELLS

scholarly article
Prioritizing Pain-Associated Targets with Machine Learning

scientific article published on 20 February 2021
Dermal sheath contraction powers stem cell niche relocation during hair cycle regression

scientific article published on 19 December 2019
Making Common Fund data more findable: Catalyzing a Data Ecosystem

The COVID-19 Gene and Drug Set Library

scientific article published on 13 May 2020
Cell-specific prediction and application of drug-induced gene expression profiles

article
PubMedAlertMe--standalone Windows-based PubMed SDI software application

scientific article published on 9 April 2008
Coordinated Regulation of Hematopoietic and Mesenchymal Stem Cells in a Bone Marrow Niche

scholarly article
Temporal proteomic profiling of postnatal human cortical development

article
EnrichrBot: Twitter Bot Tracking Tweets About Human Genes

scientific article published on 11 April 2020
Towards Intelligent Integration and Sharing of Stem Cell Research Data

scientific article published on 01 June 2020
piNET: a versatile web platform for downstream analysis and visualization of proteomics data

scientific article published on 29 May 2020
Gene set predictor for post-treatment Lyme disease

scientific article published in 2022
Connectivity Mapping: Methods and Applications

scientific article published in 2019
GPR84: an immune response dial?

scientific article published on 01 June 2020
RNA Sequencing Of Adult Bone Marrow Erythroid Populations Reveals Significant Transcriptional Deregulation In Foxo3-/- Mutant Cells

scholarly article
Connectivity Mapping Identifies BI-2536 as a Potential Drug to Treat Diabetic Kidney Disease

scientific article published on 16 October 2020
Transforming L1000 profiles to RNA-seq-like profiles with deep learning

scientific article published in 2022
Appyters: Turning Jupyter Notebooks into data-driven web apps

An Esrrb and Nanog Cell Fate Regulatory Module Controlled by Feed Forward Loop Interactions

scientific article published on 19 March 2021
A Systems Approach Identifies Essential FOXO3 Functions in Erythroblast Enucleation Process

scholarly article
Regulation of Primitive Erythroid Progenitor Development

scholarly article
Genetic driver mutations introduced in identical cell-of-origin in murine glioblastoma reveal distinct immune landscapes but similar response to checkpoint blockade

scientific article published on 08 July 2020
Interoperable RNA-Seq analysis in the cloud

scientific article published on 07 March 2020
A multi-omic analysis of MCF10A cells provides a resource for integrative assessment of ligand-mediated molecular and phenotypic responses

scientific article published in 2022
Chemokine Signatures of Pathogen-Specific T Cells II: Memory T Cells in Acute and Chronic Infection

scientific article published on 18 September 2020
SigCom LINCS: data and metadata search engine for a million gene expression signatures

scientific article published in 2022
Connecting clusters of patient to drug responses of cell lines to suggest personalized therapeutics for breast cancer

article

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