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List of works by Avi Ma'ayan

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eXpression2Kinases (X2K) Web: linking expression signatures to upstream cell signaling networks

scientific article published in July 2018
Habenular TCF7L2 links nicotine addiction to diabetes

scientific article published on 16 October 2019
Sets2Networks: network inference from repeated observations of sets

scientific article
Activation of alternate prosurvival pathways accounts for acquired sunitinib resistance in U87MG glioma xenografts

scientific article
Dynamics of the discovery process of protein-protein interactions from low content studies

scientific article
Cooperative Transcription Factor Induction Mediates Hemogenic Reprogramming.

scientific article published in December 2018
Integration of pan-cancer transcriptomics with RPPA proteomics reveals mechanisms of epithelial-mesenchymal transition.

scientific article published on 2 January 2018
From components to regulatory motifs in signalling networks

scientific article published on 20 February 2006
Integrative Analysis of Sex-Specific microRNA Networks Following Stress in Mouse Nucleus Accumbens

scientific article published on 23 December 2016
Recovering protein-protein and domain-domain interactions from aggregation of IP-MS proteomics of coregulator complexes

scientific article
Engineering a haematopoietic stem cell niche by revitalizing mesenchymal stromal cells

scientific article published on 15 April 2019
Transcriptomic analysis uncovers novel synergistic mechanisms in combination therapy for lupus nephritis.

scientific article published in November 2017
Predicting age by mining electronic medical records with deep learning characterizes differences between chronological and physiological age.

scientific article published on 4 November 2017
Multiple kinases and system robustness: a link between Cdc37 and genome integrity

scientific article
Proteomics analysis of the non-muscle myosin heavy chain IIa-enriched actin-myosin complex reveals multiple functions within the podocyte

scientific article
Drug/Cell-line Browser: interactive canvas visualization of cancer drug/cell-line viability assay datasets

scientific article
Transforming growth factor β signaling controls activities of human intestinal CD8(+)T suppressor cells

scientific article published on 08 December 2012
Unexplored therapeutic opportunities in the human genome

scientific article published on 23 March 2018
Principal Angle Enrichment Analysis (PAEA): Dimensionally Reduced Multivariate Gene Set Enrichment Analysis Tool

scientific article published in November 2015
Mining data and metadata from the gene expression omnibus

article
GEN3VA: aggregation and analysis of gene expression signatures from related studies

scientific article (publication date: 15 November 2016)
The cognitive phenotype of Down syndrome: insights from intracellular network analysis

scientific article published on July 2006
Direct activation of PP2A for the treatment of tyrosine kinase inhibitor-resistant lung adenocarcinoma

scientific article published on 21 February 2019
Podocyte-Specific Induction of Krüppel-Like Factor 15 Restores Differentiation Markers and Attenuates Kidney Injury in Proteinuric Kidney Disease

Topology of resultant networks shaped by evolutionary pressure

scientific article
LINCS Data Portal 2.0: next generation access point for perturbation-response signatures

scientific article published on 01 January 2020
Integration of protein phosphorylation, acetylation, and methylation data sets to outline lung cancer signaling networks

scientific article published on 22 May 2018
Microdynamics and criticality of adaptive regulatory networks.

scientific article published on 19 April 2010
Datasets2Tools, repository and search engine for bioinformatics datasets, tools and canned analyses

scientific article published on 27 February 2018
Sustainable data and metadata management at the BD2K-LINCS Data Coordination and Integration Center.

scientific article published on 19 June 2018
FAIRsharing, a cohesive community approach to the growth in standards, repositories and policies

Sig2BioPAX: Java tool for converting flat files to BioPAX Level 3 format

scientific article
Integrative radiogenomic analysis for multicentric radiophenotype in glioblastoma

scientific article
Morphine Regulated Synaptic Networks Revealed by Integrated Proteomics and Network Analysis

scientific article published on 6 July 2015
FNV: light-weight flash-based network and pathway viewer

scientific article
Complex systems biology

scientific article
Reprint of “Abstraction for data integration: Fusing mammalian molecular, cellular and phenotype big datasets for better knowledge extraction”

scientific article published on August 18, 2015
Geneshot: search engine for ranking genes from arbitrary text queries

scientific article published on 01 July 2019
FAIRshake: Toolkit to Evaluate the FAIRness of Research Digital Resources

scientific article published on 30 October 2019
Colliding Dynamical Complex Network Models: Biological Attractors versus Attractors from Material Physics

scientific article published on November 7, 2012
Dermal Condensate Niche Fate Specification Occurs Prior to Formation and Is Placode Progenitor Dependent

scientific article published on 27 December 2018
Inferring the Sign of Kinase-Substrate Interactions by Combining Quantitative Phosphoproteomics with a Literature-Based Mammalian Kinome Network

article published in 2010
Massive Mining of Publicly Available RNA-seq Data from Human and Mouse

scholarly article published 14 September 2017
Modulating the transcriptional landscape of SARS-CoV-2 as an effective method for developing antiviral compounds

article published in 2020
The Signaling Pathways Project, an integrated 'omics knowledgebase for mammalian cellular signaling pathways

scientific article published on 31 October 2019
Short-term LXR activation improves epidermal barrier features in mild-to-moderate atopic dermatitis: a randomized controlled trial

scientific article published on 19 March 2018
Protein kinase target discovery from genome-wide messenger RNA expression profiling

scientific article published on July 2010
Cell-specific prediction and application of drug-induced gene expression profiles

scientific article published in January 2018
modEnrichr: a suite of gene set enrichment analysis tools for model organisms

scientific article published on 01 July 2019
ChEA2: Gene-Set Libraries from ChIP-X Experiments to Decode the Transcription Regulome

article

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