List of works - Ruibang Luo

16GT: a fast and sensitive variant caller using a 16-genotype probabilistic model

scientific article published on 15 June 2017

16GT: a fast and sensitive variant caller using a 16-genotype probabilistic model

A multi-task convolutional deep neural network for variant calling in single molecule sequencing

scientific article published on 01 March 2019

AC-DIAMOND: Accelerating Protein Alignment via Better SIMD Parallelization and Space-Efficient Indexing

Assemblathon 1: a competitive assessment of de novo short read assembly methods

scientific article

Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species

scientific article

BALSA: integrated secondary analysis for whole-genome and whole-exome sequencing, accelerated by GPU.

scientific article

BASE: a practical de novo assembler for large genomes using long NGS reads

scientific article

Building the sequence map of the human pan-genome

scientific article

COPE: an accurate k-mer-based pair-end reads connection tool to facilitate genome assembly

scientific article

Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing

scholarly article published 28 April 2018

Clinical analysis and pluripotent stem cells-based model reveal possible impacts of ACE2 and lung progenitor cells on infants vulnerable to COVID-19

scientific article published on 01 January 2021

De novo assembly of a haplotype-resolved human genome.

scientific article

ECNano: A cost-effective workflow for target enrichment sequencing and accurate variant calling on 4800 clinically significant genes using a single MinION flowcell

scientific article published on 04 March 2022

Efficient SNP-sensitive alignment and database-assisted SNP calling for low coverage samples

article published in 2012

FaSD-somatic: a fast and accurate somatic SNV detection algorithm for cancer genome sequencing data

scientific article

First Draft Genome Sequence of the Pathogenic Fungus Lomentospora prolificans (Formerly Scedosporium prolificans).

scientific article published on 29 September 2017

From Peer-Reviewed to Peer-Reproduced in Scholarly Publishing: The Complementary Roles of Data Models and Workflows in Bioinformatics

scientific article

Genome-Wide Mapping of Structural Variations Reveals a Copy Number Variant That Determines Reproductive Morphology in Cucumber.

scientific article

HKG: an open genetic variant database of 205 Hong Kong cantonese exomes

scientific article published on 08 February 2022

International network of cancer genome projects

scientific article

LRSim: A Linked-Reads Simulator Generating Insights for Better Genome Partitioning

scientific article published on 9 November 2017

MEGAHIT v1.0: A fast and scalable metagenome assembler driven by advanced methodologies and community practices

scientific article published on 21 March 2016

MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph

scientific article

MICA: A fast short-read aligner that takes full advantage of Many Integrated Core Architecture (MIC).

scientific article published on 23 April 2015

Mapping copy number variation by population-scale genome sequencing

scientific article

RENET2: high-performance full-text gene-disease relation extraction with iterative training data expansion

scientific article published on 05 July 2021

SOAP3-dp: fast, accurate and sensitive GPU-based short read aligner

scientific article (publication date: 2013)

SOAP3: ultra-fast GPU-based parallel alignment tool for short reads

scientific article

SOAPdenovo-Trans: de novo transcriptome assembly with short RNA-Seq reads.

scientific article

Sequencing of 50 human exomes reveals adaptation to high altitude

scientific article

Single-base resolution maps of cultivated and wild rice methylomes and regulatory roles of DNA methylation in plant gene expression

scientific article

Skyhawk: An Artificial Neural Network-based discriminator for reviewing clinically significant genomic variants

scholarly article published 1 May 2018

Structural variation in two human genomes mapped at single-nucleotide resolution by whole genome de novo assembly

scientific article

The DNA methylome of human peripheral blood mononuclear cells

scientific article

The oyster genome reveals stress adaptation and complexity of shell formation

scientific article

database.bio: a web application for interpreting human variations

scientific article published on 26 August 2015

List of works by Ruibang Luo

16GT: a fast and sensitive variant caller using a 16-genotype probabilistic model

16GT: a fast and sensitive variant caller using a 16-genotype probabilistic model

A multi-task convolutional deep neural network for variant calling in single molecule sequencing

AC-DIAMOND: Accelerating Protein Alignment via Better SIMD Parallelization and Space-Efficient Indexing

Assemblathon 1: a competitive assessment of de novo short read assembly methods

Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species

BALSA: integrated secondary analysis for whole-genome and whole-exome sequencing, accelerated by GPU.

BASE: a practical de novo assembler for large genomes using long NGS reads

Building the sequence map of the human pan-genome

COPE: an accurate k-mer-based pair-end reads connection tool to facilitate genome assembly

Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing

Clinical analysis and pluripotent stem cells-based model reveal possible impacts of ACE2 and lung progenitor cells on infants vulnerable to COVID-19

De novo assembly of a haplotype-resolved human genome.

ECNano: A cost-effective workflow for target enrichment sequencing and accurate variant calling on 4800 clinically significant genes using a single MinION flowcell

Efficient SNP-sensitive alignment and database-assisted SNP calling for low coverage samples

FaSD-somatic: a fast and accurate somatic SNV detection algorithm for cancer genome sequencing data

First Draft Genome Sequence of the Pathogenic Fungus Lomentospora prolificans (Formerly Scedosporium prolificans).

From Peer-Reviewed to Peer-Reproduced in Scholarly Publishing: The Complementary Roles of Data Models and Workflows in Bioinformatics

Genome-Wide Mapping of Structural Variations Reveals a Copy Number Variant That Determines Reproductive Morphology in Cucumber.

HKG: an open genetic variant database of 205 Hong Kong cantonese exomes

International network of cancer genome projects

LRSim: A Linked-Reads Simulator Generating Insights for Better Genome Partitioning

MEGAHIT v1.0: A fast and scalable metagenome assembler driven by advanced methodologies and community practices

MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph

MICA: A fast short-read aligner that takes full advantage of Many Integrated Core Architecture (MIC).

Mapping copy number variation by population-scale genome sequencing

RENET2: high-performance full-text gene-disease relation extraction with iterative training data expansion

SOAP3-dp: fast, accurate and sensitive GPU-based short read aligner

SOAP3: ultra-fast GPU-based parallel alignment tool for short reads

SOAPdenovo-Trans: de novo transcriptome assembly with short RNA-Seq reads.

Sequencing of 50 human exomes reveals adaptation to high altitude

Single-base resolution maps of cultivated and wild rice methylomes and regulatory roles of DNA methylation in plant gene expression

Skyhawk: An Artificial Neural Network-based discriminator for reviewing clinically significant genomic variants

Structural variation in two human genomes mapped at single-nucleotide resolution by whole genome de novo assembly

The DNA methylome of human peripheral blood mononuclear cells

The oyster genome reveals stress adaptation and complexity of shell formation

database.bio: a web application for interpreting human variations