List of works - Jin-woo Bae

An increase in the Akkermansia spp. population induced by metformin treatment improves glucose homeostasis in diet-induced obese mice

scientific article

Innate immune homeostasis by the homeobox gene caudal and commensal-gut mutualism in Drosophila.

scientific article

Proteobacteria: microbial signature of dysbiosis in gut microbiota

scientific article published on 22 July 2015

Insect gut bacterial diversity determined by environmental habitat, diet, developmental stage, and phylogeny of host

scientific article

Amplification Methods Bias Metagenomic Libraries of Uncultured Single-Stranded and Double-Stranded DNA Viruses

scientific article published on September 16, 2011

Metagenomic analysis of kimchi, a traditional Korean fermented food

scientific article

Diversity and abundance of single-stranded DNA viruses in human feces.

scientific article

Investigation of archaeal and bacterial diversity in fermented seafood using barcoded pyrosequencing.

scientific article published on 9 July 2009

Comparative analysis of Korean human gut microbiota by barcoded pyrosequencing

scientific article

Diversity of ammonium-oxidizing bacteria in a granular sludge anaerobic ammonium-oxidizing (anammox) reactor

scientific article

Amplification of uncultured single-stranded DNA viruses from rice paddy soil

scientific article

Enteric Viruses Ameliorate Gut Inflammation via Toll-like Receptor 3 and Toll-like Receptor 7-Mediated Interferon-β Production.

scientific article

Comparing microarrays and next-generation sequencing technologies for microbial ecology research.

scientific article published on 08 April 2010

Bacterial, archaeal, and eukaryal diversity in the intestines of Korean people

scientific article

Bacterial community analysis during fermentation of ten representative kinds of kimchi with barcoded pyrosequencing

scientific article

Strict vegetarian diet improves the risk factors associated with metabolic diseases by modulating gut microbiota and reducing intestinal inflammation

scientific article

Metagenomic characterization of airborne viral DNA diversity in the near-surface atmosphere

scientific article

Metagenomic Analysis of the Viral Communities in Fermented Foods

scientific article published on December 23, 2010

Phylogenetic characterization of two novel commensal bacteria involved with innate immune homeostasis in Drosophila melanogaster.

scientific article

Chronic Repression of mTOR Complex 2 Induces Changes in the Gut Microbiota of Diet-induced Obese Mice

scientific article published on 29 July 2016

Influence of soil components on the biodegradation of benzene, toluene, ethylbenzene, and o-, m-, and p-xylenes by the newly isolated bacterium Pseudoxanthomonas spadix BD-a59.

scientific article published on 03 October 2008

Unexpected convergence of fungal and bacterial communities during fermentation of traditional Korean alcoholic beverages inoculated with various natural starters

scientific article published on 5 October 2011

Development and evaluation of genome-probing microarrays for monitoring lactic acid bacteria.

scientific article

Analysis of yeast and archaeal population dynamics in kimchi using denaturing gradient gel electrophoresis

scientific article published on 21 May 2008

Lysogeny is prevalent and widely distributed in the murine gut microbiota.

scientific article published on 7 February 2018

Impact of pelvic radiotherapy on gut microbiota of gynecological cancer patients revealed by massive pyrosequencing

scientific article

Arthrobacter soli sp. nov., a novel bacterium isolated from wastewater reservoir sediment.

scientific article

Spatial disturbances in altered mucosal and luminal gut viromes of diet-induced obese mice.

scientific article published on 22 December 2015

Blautia stercoris sp. nov., isolated from human faeces

scientific article

Autophagy deficiency in myeloid cells increases susceptibility to obesity-induced diabetes and experimental colitis

scientific article published on 23 June 2016

Halalkalicoccus jeotgali sp. nov., a halophilic archaeon from shrimp jeotgal, a traditional Korean fermented seafood.

scientific article

Blautia faecis sp. nov., isolated from human faeces

scientific article

Endozoicomonas atrinae sp. nov., isolated from the intestine of a comb pen shell Atrina pectinata

scientific article

Metatranscriptome analysis of lactic acid bacteria during kimchi fermentation with genome-probing microarrays

scientific article published on 20 January 2009

Complete Genome Sequence of Halalkalicoccus jeotgali B3T, an Extremely Halophilic Archaeon

scientific article

Leucobacter celer sp. nov., isolated from Korean fermented seafood

scientific article

Application of quantitative real-time PCR for enumeration of total bacterial, archaeal, and yeast populations in kimchi

scientific article published in December 2009

Alishewanella jeotgali sp. nov., isolated from traditional fermented food, and emended description of the genus Alishewanella.

scientific article published on 20 July 2009

Natronococcus jeotgali sp. nov., a halophilic archaeon isolated from shrimp jeotgal, a traditional fermented seafood from Korea.

scientific article

Alishewanella agri sp. nov., isolated from landfill soil.

scientific article

Pseudoalteromonas marina sp. nov., a marine bacterium isolated from tidal flats of the Yellow Sea, and reclassification of Pseudoalteromonas sagamiensis as Algicola sagamiensis comb. nov.

scientific article

Obesogenic diet-induced gut barrier dysfunction and pathobiont expansion aggravate experimental colitis

scientific article

Design of long oligonucleotide probes for functional gene detection in a microbial community

scientific article published on 13 September 2005

Oceanobacillus kimchii sp. nov. isolated from a traditional Korean fermented food.

scientific article

Joostella marina gen. nov., sp. nov., a novel member of the family Flavobacteriaceae isolated from the East Sea.

scientific article

Alishewanella aestuarii sp. nov., isolated from tidal flat sediment, and emended description of the genus Alishewanella

scientific article

Haloterrigena jeotgali sp. nov., an extremely halophilic archaeon from salt-fermented food

scientific article published on 20 July 2009

Paracoccus aestuarii sp. nov., isolated from tidal flat sediment

scientific article

Sulfitobacter litoralis sp. nov., a marine bacterium isolated from the East Sea, Korea.

scientific article published in April 2007

Statistical superiority of genome-probing microarrays as genomic DNA-DNA hybridization in revealing the bacterial phylogenetic relationship compared to conventional methods

scientific article

List of works by Jin-woo Bae

An increase in the Akkermansia spp. population induced by metformin treatment improves glucose homeostasis in diet-induced obese mice

Innate immune homeostasis by the homeobox gene caudal and commensal-gut mutualism in Drosophila.

Proteobacteria: microbial signature of dysbiosis in gut microbiota

Insect gut bacterial diversity determined by environmental habitat, diet, developmental stage, and phylogeny of host

Amplification Methods Bias Metagenomic Libraries of Uncultured Single-Stranded and Double-Stranded DNA Viruses

Metagenomic analysis of kimchi, a traditional Korean fermented food

Diversity and abundance of single-stranded DNA viruses in human feces.

Investigation of archaeal and bacterial diversity in fermented seafood using barcoded pyrosequencing.

Comparative analysis of Korean human gut microbiota by barcoded pyrosequencing

Diversity of ammonium-oxidizing bacteria in a granular sludge anaerobic ammonium-oxidizing (anammox) reactor

Amplification of uncultured single-stranded DNA viruses from rice paddy soil

Enteric Viruses Ameliorate Gut Inflammation via Toll-like Receptor 3 and Toll-like Receptor 7-Mediated Interferon-β Production.

Comparing microarrays and next-generation sequencing technologies for microbial ecology research.

Bacterial, archaeal, and eukaryal diversity in the intestines of Korean people

Bacterial community analysis during fermentation of ten representative kinds of kimchi with barcoded pyrosequencing

Strict vegetarian diet improves the risk factors associated with metabolic diseases by modulating gut microbiota and reducing intestinal inflammation

Metagenomic characterization of airborne viral DNA diversity in the near-surface atmosphere

Metagenomic Analysis of the Viral Communities in Fermented Foods

Phylogenetic characterization of two novel commensal bacteria involved with innate immune homeostasis in Drosophila melanogaster.

Chronic Repression of mTOR Complex 2 Induces Changes in the Gut Microbiota of Diet-induced Obese Mice

Influence of soil components on the biodegradation of benzene, toluene, ethylbenzene, and o-, m-, and p-xylenes by the newly isolated bacterium Pseudoxanthomonas spadix BD-a59.

Unexpected convergence of fungal and bacterial communities during fermentation of traditional Korean alcoholic beverages inoculated with various natural starters

Development and evaluation of genome-probing microarrays for monitoring lactic acid bacteria.

Analysis of yeast and archaeal population dynamics in kimchi using denaturing gradient gel electrophoresis

Lysogeny is prevalent and widely distributed in the murine gut microbiota.

Impact of pelvic radiotherapy on gut microbiota of gynecological cancer patients revealed by massive pyrosequencing

Arthrobacter soli sp. nov., a novel bacterium isolated from wastewater reservoir sediment.

Spatial disturbances in altered mucosal and luminal gut viromes of diet-induced obese mice.

Blautia stercoris sp. nov., isolated from human faeces

Autophagy deficiency in myeloid cells increases susceptibility to obesity-induced diabetes and experimental colitis

Halalkalicoccus jeotgali sp. nov., a halophilic archaeon from shrimp jeotgal, a traditional Korean fermented seafood.

Blautia faecis sp. nov., isolated from human faeces

Endozoicomonas atrinae sp. nov., isolated from the intestine of a comb pen shell Atrina pectinata

Metatranscriptome analysis of lactic acid bacteria during kimchi fermentation with genome-probing microarrays

Complete Genome Sequence of Halalkalicoccus jeotgali B3T, an Extremely Halophilic Archaeon

Leucobacter celer sp. nov., isolated from Korean fermented seafood

Application of quantitative real-time PCR for enumeration of total bacterial, archaeal, and yeast populations in kimchi

Alishewanella jeotgali sp. nov., isolated from traditional fermented food, and emended description of the genus Alishewanella.

Natronococcus jeotgali sp. nov., a halophilic archaeon isolated from shrimp jeotgal, a traditional fermented seafood from Korea.

Alishewanella agri sp. nov., isolated from landfill soil.

Pseudoalteromonas marina sp. nov., a marine bacterium isolated from tidal flats of the Yellow Sea, and reclassification of Pseudoalteromonas sagamiensis as Algicola sagamiensis comb. nov.

Obesogenic diet-induced gut barrier dysfunction and pathobiont expansion aggravate experimental colitis

Design of long oligonucleotide probes for functional gene detection in a microbial community

Oceanobacillus kimchii sp. nov. isolated from a traditional Korean fermented food.

Joostella marina gen. nov., sp. nov., a novel member of the family Flavobacteriaceae isolated from the East Sea.

Alishewanella aestuarii sp. nov., isolated from tidal flat sediment, and emended description of the genus Alishewanella

Haloterrigena jeotgali sp. nov., an extremely halophilic archaeon from salt-fermented food

Paracoccus aestuarii sp. nov., isolated from tidal flat sediment

Sulfitobacter litoralis sp. nov., a marine bacterium isolated from the East Sea, Korea.

Statistical superiority of genome-probing microarrays as genomic DNA-DNA hybridization in revealing the bacterial phylogenetic relationship compared to conventional methods