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List of works by Jin-woo Bae

Acidovorax soli sp. nov., isolated from landfill soil

scientific article

Acinetobacter apis sp. nov., isolated from the intestinal tract of a honey bee, Apis mellifera.

scientific article

Actibacter haliotis sp. nov., isolated from the gut of an abalone, Haliotis discus hannai, and emended description of the genus Actibacter.

scientific article published on 30 September 2014

Actinomyces haliotis sp. nov., a bacterium isolated from the gut of an abalone, Haliotis discus hannai

scientific article

Agromyces atrinae sp. nov., isolated from fermented seafood

scientific article published on 7 August 2009

Aliihoeflea aestuarii gen. nov., sp. nov., a novel bacterium isolated from tidal flat sediment

scientific article

Alishewanella aestuarii sp. nov., isolated from tidal flat sediment, and emended description of the genus Alishewanella

scientific article

Alishewanella agri sp. nov., isolated from landfill soil.

scientific article

Alishewanella jeotgali sp. nov., isolated from traditional fermented food, and emended description of the genus Alishewanella.

scientific article published on 20 July 2009

Amplification Methods Bias Metagenomic Libraries of Uncultured Single-Stranded and Double-Stranded DNA Viruses ⬇️

scientific article published on September 16, 2011

Amplification of uncultured single-stranded DNA viruses from rice paddy soil

scientific article

An increase in the Akkermansia spp. population induced by metformin treatment improves glucose homeostasis in diet-induced obese mice

scientific article

Anaerostipes hominis sp. nov., a novel butyrate-producing bacteria isolated from faeces of a patient with Crohn's disease

scholarly article published in 2021

Analysis of yeast and archaeal population dynamics in kimchi using denaturing gradient gel electrophoresis

scientific article published on 21 May 2008

Application of quantitative real-time PCR for enumeration of total bacterial, archaeal, and yeast populations in kimchi

scientific article published in December 2009

Arthrobacter echini sp. nov., isolated from the gut of a purple sea urchin, Heliocidaris crassispina.

scientific article

Arthrobacter soli sp. nov., a novel bacterium isolated from wastewater reservoir sediment.

scientific article

Autophagy deficiency in myeloid cells increases susceptibility to obesity-induced diabetes and experimental colitis

scientific article published on 23 June 2016

Bacterial community analysis during fermentation of ten representative kinds of kimchi with barcoded pyrosequencing

scientific article

Bacterial, archaeal, and eukaryal diversity in the intestines of Korean people

scientific article

Bacteroides faecis sp. nov., isolated from human faeces

scientific article

Bifidobacterium stercoris sp. nov., isolated from human faeces

scientific article

Bizionia fulviae sp. nov., isolated from the gut of an egg cockle, Fulvia mutica

scientific article

Bizionia psychrotolerans sp. nov., a psychrophilic bacterium isolated from the intestine of a sea cucumber (Apostichopus japonicus).

scientific article

Blastopirellula cremea sp. nov., isolated from a dead ark clam.

scientific article

Blautia faecis sp. nov., isolated from human faeces

scientific article

Blautia stercoris sp. nov., isolated from human faeces

scientific article

Bombella apis sp. nov., an acetic acid bacterium isolated from the midgut of a honey bee.

scientific article

Brachybacterium squillarum sp. nov., isolated from salt-fermented seafood

scientific article

Brevilactibacter coleopterorum sp. nov., isolated from the intestine of the dark diving beetle Hydrophilus acuminatus, and Weissella coleopterorum sp. nov., isolated from the intestine of the diving beetle Cybister lewisianus

scientific article published in 2021

Brevundimonas basaltis sp. nov., isolated from black sand

scientific article published on 11 August 2009

Carnobacterium jeotgali sp. nov., isolated from a Korean traditional fermented food

scientific article published on 30 July 2009

Characterization of Symbiobacterium toebii, an obligate commensal thermophile isolated from compost.

scientific article published in February 2002

Characterization of the depth-related changes in the microbial communities in Lake Hovsgol sediment by 16S rRNA gene-based approaches

scientific article

Chronic Repression of mTOR Complex 2 Induces Changes in the Gut Microbiota of Diet-induced Obese Mice

scientific article published on 29 July 2016

Cloacibacterium haliotis sp. nov., isolated from the gut of an abalone, Haliotis discus hannai

scientific article

Clostridium hastiforme is a later synonym of Tissierella praeacuta

scientific article

Cobetia crustatorum sp. nov., a novel slightly halophilic bacterium isolated from traditional fermented seafood in Korea

scientific article published on 4 August 2009

Comamonas piscis sp. nov., isolated from the intestine of a Korean rockfish, Sebastes schlegelii.

scientific article

Comparative analysis of Korean human gut microbiota by barcoded pyrosequencing

scientific article

Comparative viral metagenomics of environmental samples from Korea.

scientific article published on 30 September 2013

Comparing microarrays and next-generation sequencing technologies for microbial ecology research.

scientific article published on 08 April 2010

Complete Genome Sequence of Halalkalicoccus jeotgali B3T, an Extremely Halophilic Archaeon

scientific article

Complete genome sequence of Haloarcula sp. CBA1115 isolated from non-purified solar salts

scientific article published on 3 April 2015

Conditionally Pathogenic Gut Microbes Promote Larval Growth by Increasing Redox-Dependent Fat Storage in High-Sugar Diet-Fed Drosophila

scientific article

Corynebacterium atrinae sp. nov., isolated from the gastrointestinal tract of a pen shell, Atrina pectinata.

scientific article

Corynebacterium nuruki sp. nov., isolated from an alcohol fermentation starter.

scientific article

Croceitalea litorea sp. nov., isolated from seashore sand

scientific article

Design of long oligonucleotide probes for functional gene detection in a microbial community

scientific article published on 13 September 2005

Determination of cyanobacterial diversity during algal blooms in Daechung Reservoir, Korea, on the basis of cpcBA intergenic spacer region analysis.

scientific article

Development and evaluation of genome-probing microarrays for monitoring lactic acid bacteria.

scientific article

Development of microbial genome-probing microarrays using digital multiple displacement amplification of uncultivated microbial single cells.

scientific article published in August 2008

Dietzia alimentaria sp. nov., isolated from a traditional Korean food.

scientific article

Diversity and abundance of single-stranded DNA viruses in human feces.

scientific article

Diversity of ammonium-oxidizing bacteria in a granular sludge anaerobic ammonium-oxidizing (anammox) reactor

scientific article

Draft Genome Sequence of Bacteroides faecis MAJ27T, a Strain Isolated from Human Feces ⬇️

scientific article published on December 1, 2011

Draft Genome Sequence of Pedobacter agri PB92 T , Which Belongs to the Family Sphingobacteriaceae ⬇️

scientific article published on July 1, 2012

Draft genome sequence of Dietzia alimentaria 72T, belonging to the family Dietziaceae, isolated from a traditional Korean food

scientific article

Dyella jejuensis sp. nov., isolated from soil of Hallasan Mountain in Jeju Island

scientific article

Endozoicomonas atrinae sp. nov., isolated from the intestine of a comb pen shell Atrina pectinata

scientific article

Enteric Viruses Ameliorate Gut Inflammation via Toll-like Receptor 3 and Toll-like Receptor 7-Mediated Interferon-β Production.

scientific article

Enterococcus diestrammenae sp. nov., isolated from the gut of Diestrammena coreana

scientific article

Ferrimonas pelagia sp. nov., isolated from seawater.

scientific article

Flexivirga lutea sp. nov., isolated from the faeces of a crested ibis, Nipponia nippon, and emended description of the genus Flexivirga.

scientific article

Generation of subspecies level-specific microbial diagnostic microarrays using genes amplified from subtractive suppression hybridization as microarray probes

scientific article

Genome sequence of Brachybacterium squillarum M-6-3(T), isolated from salt-fermented seafood

scientific article published on November 2011

Genome sequence of Corynebacterium nuruki S6-4 T, isolated from alcohol fermentation starter

scientific article published on 17 June 2011

Genome sequence of strain TW15, a novel member of the genus Ruegeria, belonging to the marine Roseobacter clade.

scientific article

Genome sequence of strain TW25, a novel member of the genus Ornithinibacillus in the family Bacillaceae

scientific article

Genome sequence of the chromate-resistant bacterium Leucobacter salsicius type strain M1-8(T.).

scientific article

Genomic Analysis of the Moderately Haloalkaliphilic Bacterium Oceanobacillus kimchii Strain X50T with Improved High-Quality Draft Genome Sequences.

scientific article published on 15 September 2015

Genomic and phenotypic analyses of Carnobacterium jeotgali strain MS3(T), a lactate-producing candidate biopreservative bacterium isolated from salt-fermented shrimp.

scientific article

Gibbsiella papilionis sp. nov., isolated from the intestinal tract of the butterfly Mycalesis gotama, and emended description of the genus Gibbsiella.

scientific article

Gillisia marina sp. nov., from seashore sand, and emended description of the genus Gillisia.

scientific article

Haladaptatus cibarius sp. nov., an extremely halophilic archaeon from seafood, and emended description of the genus Haladaptatus

scientific article published on 10 August 2009

Halalkalicoccus jeotgali sp. nov., a halophilic archaeon from shrimp jeotgal, a traditional Korean fermented seafood.

scientific article

Halapricum salinum gen. nov., sp. nov., an extremely halophilic archaeon isolated from non-purified solar salt.

scientific article

Halobellus rufus sp. nov., an extremely halophilic archaeon isolated from non-purified solar salt

scientific article published on 9 March 2014

Halococcus sediminicola sp. nov., an extremely halophilic archaeon isolated from a marine sediment

scientific article

Halolamina rubra sp. nov., a haloarchaeon isolated from non-purified solar salt.

scientific article published on 15 March 2014

Halomonas jeotgali sp. nov., a new moderate halophilic bacterium isolated from a traditional fermented seafood

scientific article

Halorubrum cibi sp. nov., an extremely halophilic archaeon from salt-fermented seafood

scientific article

Halorubrum halophilum sp. nov., an extremely halophilic archaeon isolated from a salt-fermented seafood.

scientific article

Haloterrigena jeotgali sp. nov., an extremely halophilic archaeon from salt-fermented food

scientific article published on 20 July 2009

Henriciella marina gen. nov., sp. nov., a novel member of the family Hyphomonadaceae isolated from the East Sea.

scientific article

Homogeneous versus heterogeneous probes for microbial ecological microarrays

scientific article

Host habitat is the major determinant of the gut microbiome of fish

scientific article published on 31 July 2021

Host phylogeny, habitat, and diet are main drivers of the cephalopod and mollusk gut microbiome

scientific article published on 08 May 2022

Impact of pelvic radiotherapy on gut microbiota of gynecological cancer patients revealed by massive pyrosequencing

scientific article

Influence of soil components on the biodegradation of benzene, toluene, ethylbenzene, and o-, m-, and p-xylenes by the newly isolated bacterium Pseudoxanthomonas spadix BD-a59.

scientific article published on 03 October 2008

Innate immune homeostasis by the homeobox gene caudal and commensal-gut mutualism in Drosophila.

scientific article

Insect gut bacterial diversity determined by environmental habitat, diet, developmental stage, and phylogeny of host

scientific article

Interspecies variation of Kitasatospora recifensis endophytic from yam bean producing thermostable amylases in alternative media.

scientific article published on 15 May 2007

Investigation of archaeal and bacterial diversity in fermented seafood using barcoded pyrosequencing.

scientific article published on 9 July 2009

Isolation of uncultivated anaerobic thermophiles from compost by supplementing cell extract of Geobacillus toebii in enrichment culture medium

scientific article published on 22 July 2005

Joostella marina gen. nov., sp. nov., a novel member of the family Flavobacteriaceae isolated from the East Sea.

scientific article

Kistimonas scapharcae sp. nov., isolated from a dead ark clam (Scapharca broughtonii), and emended description of the genus Kistimonas ⬇️

scientific article published on January 13, 2012

Knoellia locipacati sp. nov., from soil of the Demilitarized Zone in South Korea ⬇️

scientific article published on March 18, 2011

Kocuria atrinae sp. nov., isolated from traditional Korean fermented seafood

scientific article

Kocuria koreensis sp. nov., isolated from fermented seafood

scientific article published on 31 July 2009

Kocuria salsicia sp. nov., isolated from salt-fermented seafood

scientific article

Kushneria konosiri sp. nov., isolated from the Korean salt-fermented seafood Daemi-jeot

scientific article published on 4 September 2017

Lactobacillus kimchiensis sp. nov., isolated from a fermented food.

scientific article

Lentibacillus jeotgali sp. nov., a halophilic bacterium isolated from traditional Korean fermented seafood

scientific article published on 7 August 2009

Leucobacter salsicius sp. nov., from a salt-fermented food

scientific article

Longitudinal evaluation of fecal microbiota transplantation for ameliorating calf diarrhea and improving growth performance

scientific article published on 08 January 2021

Luteimonas aestuarii sp. nov., isolated from tidal flat sediment

scientific article

Lysogeny is prevalent and widely distributed in the murine gut microbiota.

scientific article published on 7 February 2018

Male castration increases adiposity via small intestinal microbial alterations

scientific article published on 23 November 2020

Marinobacter goseongensis sp. nov., from seawater

scientific article

Marinobacterium halophilum sp. nov., a marine bacterium isolated from the Yellow Sea.

scientific article

Marinomonas basaltis sp. nov., a marine bacterium isolated from black sand

scientific article

Metagenomic Analysis of the Viral Communities in Fermented Foods ⬇️

scientific article published on December 23, 2010

Metagenomic analysis of kimchi, a traditional Korean fermented food

scientific article

Metagenomic characterization of airborne viral DNA diversity in the near-surface atmosphere

scientific article

Metatranscriptome analysis of lactic acid bacteria during kimchi fermentation with genome-probing microarrays

scientific article published on 20 January 2009

Methylobacterium platani sp. nov., isolated from a leaf of the tree Platanus orientalis

scientific article

Microbacterium mitrae sp. nov., isolated from salted turban shell

scientific article

Microbulbifer echini sp. nov., isolated from the gastrointestinal tract of a purple sea urchin, Heliocidaris crassispina

scientific article

Mitofusin-2 boosts innate immunity through the maintenance of aerobic glycolysis and activation of xenophagy in mice

scientific article published on 10 May 2021

Mucilaginibacter oryzae sp. nov., isolated from soil of a rice paddy

scientific article

Natronococcus jeotgali sp. nov., a halophilic archaeon isolated from shrimp jeotgal, a traditional fermented seafood from Korea.

scientific article

Neptunomonas concharum sp. nov., isolated from a dead ark clam, and emended description of the genus Neptunomonas ⬇️

scientific article published on December 23, 2011

Nitratireductor basaltis sp. nov., isolated from black beach sand

scientific article

Nocardioides basaltis sp. nov., isolated from black beach sand

scientific article

Novel haloarchaeon Natrinema thermophila having the highest growth temperature among haloarchaea with a large genome size.

scientific article

Oceanisphaera donghaensis sp. nov., a halophilic bacterium from the East Sea, Korea.

scientific article

Oceanisphaera sediminis sp. nov., isolated from marine sediment.

scientific article

Oceanobacillus kimchii sp. nov. isolated from a traditional Korean fermented food.

scientific article

Orbus sasakiae sp. nov., a bacterium isolated from the gut of the butterfly Sasakia charonda, and emended description of the genus Orbus.

scientific article

Ornithinibacillus scapharcae sp. nov., isolated from a dead ark clam.

scientific article

Paenibacillus apis sp. nov. and Paenibacillus intestini sp. nov., isolated from the intestine of the honey bee Apis mellifera.

scientific article

Paenibacillus marinisediminis sp. nov., a bacterium isolated from marine sediment.

scientific article

Paenibacillus oceanisediminis sp. nov. isolated from marine sediment ⬇️

scientific article published on March 30, 2012

Paracoccus aestuarii sp. nov., isolated from tidal flat sediment

scientific article

Parasphingorhabdus cellanae sp. nov., isolated from the gut of a Korean limpet, Cellana toreuma ⬇️

scientific article published on 5 August 2022

Pedobacter agri sp. nov., from soil.

scientific article

Phaeobacter marinintestinus sp. nov., isolated from the intestine of a sea cucumber (Apostichopus japonicus).

scientific article

Phylogenetic characterization of two novel commensal bacteria involved with innate immune homeostasis in Drosophila melanogaster.

scientific article

Polaribacter atrinae sp. nov., isolated from the intestine of a comb pen shell, Atrina pectinata.

scientific article

Proteobacteria: microbial signature of dysbiosis in gut microbiota

scientific article published on 22 July 2015

Proteus cibarius sp. nov., a swarming bacterium from Jeotgal, a traditional Korean fermented seafood, and emended description of the genus Proteus.

scientific article

Pseudahrensia todarodis sp. nov., isolated from the gut of a Japanese flying squid, Todarodes pacificus

scientific article

Pseudoalteromonas marina sp. nov., a marine bacterium isolated from tidal flats of the Yellow Sea, and reclassification of Pseudoalteromonas sagamiensis as Algicola sagamiensis comb. nov.

scientific article

Pseudomonas sabulinigri sp. nov., isolated from black beach sand

scientific article

Pseudorhodobacter turbinis sp. nov., isolated from the gut of the Korean turban shell, Turbo cornutus

scientific article published in 2019

Pseudoruegeria haliotis sp. nov., isolated from the gut of the abalone Haliotis discus hannai ⬇️

scientific article published on August 9, 2013

Quantitative real time PCR assays for the enumeration of Saccharomyces cerevisiae and the Saccharomyces sensu stricto complex in human feces

scientific article published in December 2007

Rhodopirellula rosea sp. nov., a novel bacterium isolated from an ark clam Scapharca broughtonii ⬇️

scientific article published on June 28, 2013

Ruegeria conchae sp. nov., isolated from the ark clam Scapharca broughtonii.

scientific article

Ruminococcus faecis sp. nov., isolated from human faeces.

scientific article

Salinicoccus carnicancri sp. nov., a halophilic bacterium isolated from a Korean fermented seafood

scientific article published on 5 August 2009

Sedimentitalea todarodis sp. nov., isolated from the intestinal tract of a Japanese flying squid.

scientific article

Shewanella basaltis sp. nov., a marine bacterium isolated from black sand.

scientific article

Shimia haliotis sp. nov., a bacterium isolated from the gut of an abalone, Haliotis discus hannai.

scientific article

Simplicispira piscis sp. nov., isolated from the gut of a Korean rockfish, Sebastes schlegelii

scientific article

Social status shapes the bacterial and fungal gut communities of the honey bee.

scientific article published on 31 January 2018

Spatial disturbances in altered mucosal and luminal gut viromes of diet-induced obese mice.

scientific article published on 22 December 2015

Sphingomonas aestuarii sp. nov., isolated from tidal flat sediment.

scientific article

Sphingopyxis soli sp. nov., isolated from landfill soil

scientific article published on 4 September 2009

Stappia marina sp. nov., a marine bacterium isolated from the Yellow Sea.

scientific article

Statistical superiority of genome-probing microarrays as genomic DNA-DNA hybridization in revealing the bacterial phylogenetic relationship compared to conventional methods

scientific article

Strict vegetarian diet improves the risk factors associated with metabolic diseases by modulating gut microbiota and reducing intestinal inflammation

scientific article

Sulfitobacter litoralis sp. nov., a marine bacterium isolated from the East Sea, Korea.

scientific article published in April 2007

The effects of sequencing platforms on phylogenetic resolution in 16 S rRNA gene profiling of human feces.

scientific article published on 24 April 2018

Transfer of a healthy microbiota reduces amyloid and tau pathology in an Alzheimer's disease animal model

scientific article published on 30 August 2019

Tropicimonas sediminicola sp. nov., isolated from marine sediment.

scientific article

Unexpected convergence of fungal and bacterial communities during fermentation of traditional Korean alcoholic beverages inoculated with various natural starters

scientific article published on 5 October 2011

Vagococcus martis sp. nov., isolated from the small intestine of a marten, Martes flavigula.

scientific article

Vibrio areninigrae sp. nov., a marine bacterium isolated from black sand.

scientific article

Vibrio litoralis sp. nov., isolated from a Yellow Sea tidal flat in Korea

scientific article

Virgibacillus alimentarius sp. nov., isolated from a traditional Korean food.

scientific article

Vulcanisaeta thermophila sp. nov., a hyperthermophilic and acidophilic crenarchaeon isolated from solfataric soil.

scientific article

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