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List of works by Mark Baker

A Combination of Immobilised pH Gradients Improves Membrane Proteomics

scientific article published on 07 October 2008

A Systematic Bioinformatics Approach to Identify High Quality Mass Spectrometry Data and Functionally Annotate Proteins and Proteomes.

scientific article

A Transferrin Triggered Pathway for Highly Targeted Delivery of Graphene-Based Nanodrugs to Treat Choroidal Melanoma

scientific article published on 29 June 2018

A high-stringency blueprint of the human proteome

scientific article published on 16 October 2020

A novel multiplexed immunoassay identifies CEA, IL-8 and prolactin as prospective markers for Dukes' stages A-D colorectal cancers.

scientific article published on 8 April 2015

A novel, cost-effective and efficient chicken egg IgY purification procedure

scientific article published on 29 March 2012

A site for direct integrin αvβ6·uPAR interaction from structural modelling and docking.

scientific article published on 11 January 2014

Accelerating the search for the missing proteins in the human proteome

scientific article published on 24 January 2017

Amplified protein sensing using deep purple fluorophores on homogeneous Au substrates

scientific article published on 01 January 2007

An improved method for the detection and enrichment of low-abundant membrane and lipid raft-residing proteins

scientific article

An optimized approach for enrichment of glycoproteins from cell culture lysates using native multi-lectin affinity chromatography

article

Analytical validation considerations of multiplex mass-spectrometry-based proteomic platforms for measuring protein biomarkers

scientific article

Biorepository regulatory frameworks: building parallel resources that both promote scientific investigation and protect human subjects

scientific article

Changes in gene expressions elicited by physiological concentrations of genistein on human endometrial cancer cells.

scientific article published on October 2006

Characterization of the interaction between heterodimeric αvβ6 integrin and urokinase plasminogen activator receptor (uPAR) using functional proteomics

scientific article published on 29 October 2014

Characterization of the rat liver membrane proteome using peptide immobilized pH gradient isoelectric focusing.

scientific article published on 23 January 2008

Chicken immune responses to variations in human plasma protein ratios: a rationale for polyclonal IgY ultraimmunodepletion

scientific article published on 14 November 2012

Chromosome 7-centric analysis of proteomics data from a panel of human colon carcinoma cell lines

scientific article

Clinical proteomics stretch goals: EuPA 2012 roundtable report.

scientific article published on 16 April 2013

Combination of Multiple Spectral Libraries Improves the Current Search Methods Used to Identify Missing Proteins in the Chromosome-Centric Human Proteome Project.

scientific article published on 2 September 2015

Comparative N-glycan profiling of colorectal cancer cell lines reveals unique bisecting GlcNAc and α-2,3-linked sialic acid determinants are associated with membrane proteins of the more metastatic/aggressive cell lines.

scientific article published on 2 December 2013

Comparing SILAC and two-dimensional gel electrophoresis image analysis for profiling urokinase plasminogen activator signaling in ovarian cancer cells.

scientific article

Comprehensive N-glycome profiling of cultured human epithelial breast cells identifies unique secretome N-glycosylation signatures enabling tumorigenic subtype classification

scientific article

Correlations between integrin ανβ6 expression and clinico-pathological features in stage B and stage C rectal cancer

scientific article

Crystal structure of the complex of plasminogen activator inhibitor 2 with a peptide mimicking the reactive center loop

scientific article

De Novo Peptide Sequencing: Deep Mining of High-Resolution Mass Spectrometry Data

scientific article

Differential proteome expression associated with urokinase plasminogen activator receptor (uPAR) suppression in malignant epithelial cancer.

scientific article published on 23 September 2008

Differentiating cells of murine stratified squamous epithelia constitutively express plasminogen activator inhibitor type 2 (PAI-2)

scientific article published on 01 December 1998

Elevated plasminogen receptor expression occurs as a degradative phase event in cellular apoptosis

scientific article published on 01 June 1999

Epithelial and stromal cell urokinase plasminogen activator receptor expression differentially correlates with survival in rectal cancer stages B and C patients

scientific article

Evaluation of endogenous plasma peptide extraction methods for mass spectrometric biomarker discovery

scientific article

Exercise and the neutrophil oxidative burst: biological and experimental variability

scientific article published on 01 January 1996

Four areas of engagement requiring strengthening in modern proteomics today

scientific article

Gene expression of plasminogen activation cascade components in human term gestational tissues with labour onset

scientific article published on 01 January 1998

Guidelines for reporting the use of gel electrophoresis in proteomics.

scientific article

High-abundance protein depletion: comparison of methods for human plasma biomarker discovery

scientific article published on 01 January 2010

Homogeneous silver-coated nanoparticle substrates for enhanced fluorescence detection

scientific article

How many human proteoforms are there?

scientific article published in February 2018

Human Prestin: A Candidate PE1 Protein Lacking Stringent Mass Spectrometric Evidence?

scientific article

Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 2.1.

scientific article

Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 3.0.

scientific article published on 21 October 2019

Identification and expression of a novel marsupial cathelicidin from the tammar wallaby (Macropus eugenii).

scientific article

Immunological Detection of Conformational Neoepitopes Associated with the Serpin Activity of Plasminogen Activator Inhibitor Type-2

scientific article published on 01 May 1998

Improved membrane proteomics coverage of human embryonic stem cells by peptide IPG-IEF.

scientific article published on December 2009

In Silico Peptide Repertoire of Human Olfactory Receptor Proteomes on High-Stringency Mass Spectrometry

scientific article published on 22 May 2019

In-depth N-glycome profiling of paired colorectal cancer and non-tumorigenic tissues reveals cancer-, stage- and EGFR-specific protein N-glycosylation.

scientific article

Integrin αvβ6 sets the stage for colorectal cancer metastasis.

scientific article published on 04 September 2015

Interaction between the P14 residue and strand 2 of beta-sheet B is critical for reactive center loop insertion in plasminogen activator inhibitor-2.

scientific article

Is isolation of comprehensive human plasma peptidomes an achievable quest?

scientific article published on 12 May 2015

Liver membrane proteome glycosylation changes in mice bearing an extra-hepatic tumor.

scientific article published on 18 February 2010

Localization of plasminogen activator inhibitor type 2 (PAI-2) in hair and nail: implications for terminal differentiation.

scientific article published on June 1998

Loss of cell viability dramatically elevates cell surface plasminogen binding and activation

scientific article

Mass Spectrometry-Based Analysis for the Discovery and Validation of Potential Colorectal Cancer Stool Biomarkers.

scientific article published on 31 December 2016

Mass Spectrometry-Based Plasma Proteomics: Considerations from Sample Collection to Achieving Translational Data

scientific article published on 11 October 2019

Mass spectrometry-based protein identification in proteomics-a review

scientific article published on 11 February 2020

Mechanical stretch: physiological and pathological implications for human vascular endothelial cells

scientific article

Micromethods in single muscle fibers. 1. Determination of catalase and superoxide dismutase

scientific article published in November 1988

Micromethods in single muscle fibers. 2. Determination of glutathione reductase and glutathione peroxidase

scientific article published on 01 November 1988

Multiphoton fluorescence lifetime imaging microscopy reveals free-to-bound NADH ratio changes associated with metabolic inhibition.

scientific article

Mutation analysis of CDP, TP53, and KRAS in uterine leiomyomas

scientific article published in June 2003

Nanochannel pH gradient electrofocusing of proteins.

scientific article published on 24 July 2013

Non-specific binding of monoclonal human erythropoietin antibody AE7A5 to Escherichia coli and Saccharomyces cerevisiae proteins.

scientific article published on 3 January 2007

Occupancy of the cancer cell urokinase receptor (uPAR): effects of acid elution and exogenous uPA on cell surface urokinase (uPA)

scientific article published on 01 September 1992

Oncoproteomics: Current status and future opportunities

scientific article published on 06 June 2019

Overexpression of alpha(v)beta6 integrin in serous epithelial ovarian cancer regulates extracellular matrix degradation via the plasminogen activation cascade

scientific journal article

Overexpression of αvβ6 Integrin Alters the Colorectal Cancer Cell Proteome in Favor of Elevated Proliferation and a Switching in Cellular Adhesion That Increases Invasion ⬇️

scientific article published on May 24, 2013

Pathology, proteomics and the pathway to personalised medicine.

scientific article published on 8 January 2018

Plasminogen activator inhibitor 2 (PAI-2) is not inactivated by exposure to oxidants which can be released from activated neutrophils

scientific article published on 01 January 1990

Plasminogen fragmentation and increased production of extracellular matrix-degrading proteinases are associated with serous epithelial ovarian cancer progression

scientific article published in January 2004

Potential early clinical stage colorectal cancer diagnosis using a proteomics blood test panel

scientific article published on 28 August 2019

Preanalytical Stability of Antibodies to Pathogenic Antigens.

scientific article published on 8 May 2017

Progress on Identifying and Characterizing the Human Proteome: 2018 Metrics from the HUPO Human Proteome Project

scientific article published on 23 August 2018

Progress on Identifying and Characterizing the Human Proteome: 2019 Metrics from the HUPO Human Proteome Project

scientific article published on 13 September 2019

Protannotator: a semiautomated pipeline for chromosome-wise functional annotation of the "missing" human proteome.

scientific article published on 13 December 2013

Proteomic analysis of human plasma: Failure of centrifugal ultrafiltration to remove albumin and other high molecular weight proteins ⬇️

scientific article published on December 1, 2001

Proteomic comparison of colorectal tumours and non-neoplastic mucosa from paired patient samples using iTRAQ mass spectrometry.

scientific article published on 02 August 2011

Proteomic identification of lynchpin urokinase plasminogen activator receptor protein interactions associated with epithelial cancer malignancy.

scientific article published on March 2007

Proteomics Reveals Cell-Surface Urokinase Plasminogen Activator Receptor Expression Impacts Most Hallmarks of Cancer

scientific article published on 08 September 2019

Proteomics and the microbiome: pitfalls and potential

scientific article published on 28 September 2018

Proteomics of Huntington's disease-affected human embryonic stem cells reveals an evolving pathology involving mitochondrial dysfunction and metabolic disturbances.

scientific article published on 31 October 2014

Quantitative proteomic analysis of paired colorectal cancer and non-tumorigenic tissues reveals signature proteins and perturbed pathways involved in CRC progression and metastasis.

scientific article published on 6 June 2015

Quest for Missing Proteins: Update 2015 on Chromosome-Centric Human Proteome Project

scientific article published on 15 June 2015

Rapid purification method for the 26S proteasome from the filamentous fungus Trichoderma reesei.

scientific article

Rat liver membrane glycoproteome: enrichment by phase partitioning and glycoprotein capture

scientific article published in February 2009

Recent findings from the Human Proteome Project: opening the mass spectrometry toolbox to advance cancer diagnosis, surveillance and treatment.

scientific article published on 30 April 2015

Recommendations for mass spectrometry data quality metrics for open access data (corollary to the Amsterdam Principles)

scientific article

Recommendations for mass spectrometry data quality metrics for open access data (corollary to the Amsterdam Principles).

scientific article published on 3 November 2011

Recommendations for mass spectrometry data quality metrics for open access data (corollary to the Amsterdam principles).

scientific article published on 14 December 2011

Recommendations for mass spectrometry data quality metrics for open access data (corollary to the Amsterdam principles).

scientific article published in December 2011

Role of Multiomics Data to Understand Host-Pathogen Interactions in COVID-19 Pathogenesis

publication published on 11 January 2021

Serpins in the human hair follicle

scientific article published on 01 May 2000

Standard guidelines for the chromosome-centric human proteome project

scientific article published on 26 March 2012

Systems Proteomics View of the Endogenous Human Claudin Protein Family

scientific article

Systems-based approaches enable identification of gene targets which improve the flavour profile of low-ethanol wine yeast strains

scientific article published on 20 August 2018

Tandem ion exchange fractionation of chicken egg white reveals the presence of proliferative bioactivity

scientific article published on 19 April 2013

The Asia Oceania Human Proteome Organisation Membrane Proteomics Initiative. Preparation and characterisation of the carbonate-washed membrane standard

scientific article

The HUPO initiative on Model Organism Proteomes, iMOP.

scientific article published in February 2012

The development of multiple reaction monitoring assays for liver-derived plasma proteins

scientific article published on 16 November 2007

The effect of pH on the conversion of superoxide to hydroxyl free radicals

scientific article published on 01 October 1984

The effect of pH on yields of hydroxyl radicals produced from superoxide by potential biological iron chelators

scientific article published on 01 May 1986

The effects of free radical scavengers on arachidonic acid metabolism by ovine placental microsomes ⬇️

scientific article published on 01 January 1991

The human ENO1 gene product (recombinant human α-enolase) displays characteristics required for a plasminogen binding protein

scientific article published in January 1997

The inhibitory action of oxygen radical scavengers on proteinuria and glomerular heparan sulphate loss in the isolated perfused kidney

scientific article published on 01 January 1990

The lectin riddle: glycoproteins fractionated from complex mixtures have similar glycomic profiles

scientific article published on 01 August 2010

The localization of the relaxed form of plasminogen activator inhibitor type 2 in human gingival tissues

scientific article published on 09 November 2001

The nuclear proteome and DNA-binding fraction of human Raji lymphoma cells

scientific article

The oxidant hypochlorite (OCl−), a product of the myeloperoxidase system, degrades articular cartilage proteoglycan aggregate ⬇️

scientific article published on January 1, 1991

The plasminogen activator inhibitor-2 gene is not required for normal murine development or survival

scientific article

Tissue and plasma proteomics for early stage cancer detection

scientific article published on 01 December 2018

Topological localization of plasminogen activator inhibitor type 2

scientific article published on 01 May 2000

Ultradepletion of human plasma using chicken antibodies: a proof of concept study

scientific article published on 16 May 2013

Unlocking the puzzling biology of the black Périgord truffle Tuber melanosporum.

scientific article published on 6 November 2013

iSwathX: an interactive web-based application for extension of DIA peptide reference libraries

scientific article published on 01 February 2019

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