List of works - Hans D. Daetwyler

1000 Bull Genomes Project to Map Simple and Complex Genetic Traits in Cattle: Applications and Outcomes

scientific article published on 01 February 2019

A genome scan to detect quantitative trait loci for economically important traits in Holstein cattle using two methods and a dense single nucleotide polymorphism map

scientific article published on 01 August 2008

Accelerating wheat breeding for end-use quality with multi-trait genomic predictions incorporating near infrared and nuclear magnetic resonance-derived phenotypes.

scientific article published on 24 August 2017

Accuracy of genome-wide evaluation for disease resistance in aquaculture breeding programs.

scientific article published on 8 July 2011

Accuracy of genotype imputation based on random and selected reference sets in purebred and crossbred sheep populations and its effect on accuracy of genomic prediction.

scientific article

Accuracy of genotype imputation in sheep breeds.

scientific article published on 27 May 2011

Accuracy of imputation to whole-genome sequence in sheep

scientific article published on 17 January 2019

Accuracy of pedigree and genomic predictions of carcass and novel meat quality traits in multi-breed sheep data assessed by cross-validation

scientific article

Accuracy of predicting the genetic risk of disease using a genome-wide approach

scientific article

An independent validation association study of carcass quality, shear force, intramuscular fat percentage and omega-3 polyunsaturated fatty acid content with gene markers in Australian lamb.

scientific article

Assessment of genetic variation within a global collection of lentil (Lens culinaris Medik.) cultivars and landraces using SNP markers

scientific article

Comparing linkage and association analyses in sheep points to a better way of doing GWAS

Components of the accuracy of genomic prediction in a multi-breed sheep population.

scientific article published on October 2012

Design and phenotyping procedures for recording wool, skin, parasite resistance, growth, carcass yield and quality traits of the SheepGENOMICS mapping flock

article

Design of a low-density SNP chip for the main Australian sheep breeds and its effect on imputation and genomic prediction accuracy

scientific article published on 11 September 2015

Detailed phenotyping identifies genes with pleiotropic effects on body composition.

scientific article

Detection and validation of genomic regions associated with resistance to rust diseases in a worldwide hexaploid wheat landrace collection using BayesR and mixed linear model approaches

scientific article published on 2 March 2017

Detection and validation of structural variations in bovine whole-genome sequence data

scientific article

Diversity and Genome Analysis of Australian and Global Oilseed Brassica napus L. Germplasm Using Transcriptomics and Whole Genome Re-sequencing.

scientific article

Evaluation and Recommendations for Routine Genotyping Using Skim Whole Genome Re-sequencing in Canola

article

Evaluation of the accuracy of imputed sequence variant genotypes and their utility for causal variant detection in cattle

scientific article published on 21 February 2017

Exome sequence genotype imputation in globally diverse hexaploid wheat accessions.

scientific article published on 4 April 2017

Exome sequencing highlights the role of wild-relative introgression in shaping the adaptive landscape of the wheat genome

scientific article published on 01 May 2019

Exploitation of data from breeding programs supports rapid implementation of genomic selection for key agronomic traits in perennial ryegrass.

scientific article published on 2 June 2018

Expression quantitative trait loci in sheep liver and muscle contribute to variations in meat traits

scientific article published on 18 January 2021

Genetic Contribution of Emmer Wheat ( Schrank) to Heat Tolerance of Bread Wheat

scientific article published on 20 November 2018

Genetic Diversity, Population Structure and Ancestral Origin of Australian Wheat

scientific article published on 12 December 2017

Genetic Gain and Inbreeding from Genomic Selection in a Simulated Commercial Breeding Program for Perennial Ryegrass.

scientific article published in March 2016

Genome variants associated with RNA splicing variations in bovine are extensively shared between tissues.

scientific article

Genome-Enabled Estimates of Additive and Nonadditive Genetic Variances and Prediction of Apple Phenotypes Across Environments

scientific article

Genome-wide association studies dissect the G × E interaction for agronomic traits in a worldwide collection of safflowers (Carthamus tinctorius L.)

scientific article published in 2022

Genome-wide fine-mapping identifies pleiotropic and functional variants that predict many traits across global cattle populations

scientific article published on 08 February 2021

Genomic Prediction Using Prior Quantitative Trait Loci Information Reveals a Large Reservoir of Underutilised Blackleg Resistance in Diverse Canola (Brassica napus L.) Lines

scientific article published on 01 July 2018

Genomic Prediction and Genetic Correlation of Agronomic, Blackleg Disease, and Seed Quality Traits in Canola (Brassica napus L.).

scientific article published on 05 June 2020

Genomic Prediction of Rust Resistance in Tetraploid Wheat under Field and Controlled Environment Conditions

scientific article published in 2020

Genomic prediction for rust resistance in diverse wheat landraces.

scientific article

Genomic prediction in animals and plants: simulation of data, validation, reporting, and benchmarking

scientific article

Genomic prediction of reproduction traits for Merino sheep.

scientific article published on 17 February 2017

Genomic prediction of the polled and horned phenotypes in Merino sheep.

scientific article published on 22 May 2018

Genomic selection for recovery of original genetic background from hybrids of endangered and common breeds.

scientific article published on 14 October 2013

Genotyping-by-sequencing through transcriptomics: implementation in a range of crop species with varying reproductive habits and ploidy levels.

scientific article

How old are quantitative trait loci and how widely do they segregate?

scientific article published on 01 April 2015

Improved accuracy of genomic prediction for dry matter intake of dairy cattle from combined European and Australian data sets.

scientific article

Improving Genetic Gain with Genomic Selection in Autotetraploid Potato.

scientific article published on November 2016

Imputation of missing genotypes from sparse to high density using long-range phasing.

scientific article

Inbreeding in genome-wide selection

scientific article published on 01 December 2007

Insights into population genetics and evolution of polyploids and their ancestors.

scientific article

Meta-analysis of genome-wide association studies for cattle stature identifies common genes that regulate body size in mammals

scientific article published on 19 February 2018

Meta-analysis of sequence-based association studies across three cattle breeds reveals 25 QTL for fat and protein percentages in milk at nucleotide resolution.

scientific article published on 9 November 2017

Mitigation of inbreeding while preserving genetic gain in genomic breeding programs for outbred plants.

scientific article published on 31 March 2017

Multiple-trait QTL mapping and genomic prediction for wool traits in sheep

scientific article published on 15 August 2017

Rapid Discovery of De Novo Deleterious Mutations in Cattle Enhances the Value of Livestock as Model Species

scientific article published on 13 September 2017

Rare Variants in Transcript and Potential Regulatory Regions Explain a Small Percentage of the Missing Heritability of Complex Traits in Cattle.

scientific article published on 7 December 2015

Scans for signatures of selection in Russian cattle breed genomes reveal new candidate genes for environmental adaptation and acclimation

scientific article published in Scientific Reports

Selection on Optimal Haploid Value Increases Genetic Gain and Preserves More Genetic Diversity Relative to Genomic Selection

scientific article published on 19 June 2015

Sheep genome functional annotation reveals proximal regulatory elements contributed to the evolution of modern breeds

scientific article published on 28 February 2018

The impact of genetic architecture on genome-wide evaluation methods

scientific article

The importance of information on relatives for the prediction of genomic breeding values and the implications for the makeup of reference data sets in livestock breeding schemes

scientific article

Whole-genome regression and prediction methods applied to plant and animal breeding

scientific article published on 28 June 2012

Whole-genome resequencing of two elite sires for the detection of haplotypes under selection in dairy cattle

scientific article

Whole-genome sequencing of 234 bulls facilitates mapping of monogenic and complex traits in cattle

scientific article published on 13 July 2014

List of works by Hans D. Daetwyler

1000 Bull Genomes Project to Map Simple and Complex Genetic Traits in Cattle: Applications and Outcomes

A genome scan to detect quantitative trait loci for economically important traits in Holstein cattle using two methods and a dense single nucleotide polymorphism map

Accelerating wheat breeding for end-use quality with multi-trait genomic predictions incorporating near infrared and nuclear magnetic resonance-derived phenotypes.

Accuracy of genome-wide evaluation for disease resistance in aquaculture breeding programs.

Accuracy of genotype imputation based on random and selected reference sets in purebred and crossbred sheep populations and its effect on accuracy of genomic prediction.

Accuracy of genotype imputation in sheep breeds.

Accuracy of imputation to whole-genome sequence in sheep

Accuracy of pedigree and genomic predictions of carcass and novel meat quality traits in multi-breed sheep data assessed by cross-validation

Accuracy of predicting the genetic risk of disease using a genome-wide approach

An independent validation association study of carcass quality, shear force, intramuscular fat percentage and omega-3 polyunsaturated fatty acid content with gene markers in Australian lamb.

Assessment of genetic variation within a global collection of lentil (Lens culinaris Medik.) cultivars and landraces using SNP markers

Comparing linkage and association analyses in sheep points to a better way of doing GWAS

Components of the accuracy of genomic prediction in a multi-breed sheep population.

Design and phenotyping procedures for recording wool, skin, parasite resistance, growth, carcass yield and quality traits of the SheepGENOMICS mapping flock

Design of a low-density SNP chip for the main Australian sheep breeds and its effect on imputation and genomic prediction accuracy

Detailed phenotyping identifies genes with pleiotropic effects on body composition.

Detection and validation of genomic regions associated with resistance to rust diseases in a worldwide hexaploid wheat landrace collection using BayesR and mixed linear model approaches

Detection and validation of structural variations in bovine whole-genome sequence data

Diversity and Genome Analysis of Australian and Global Oilseed Brassica napus L. Germplasm Using Transcriptomics and Whole Genome Re-sequencing.

Evaluation and Recommendations for Routine Genotyping Using Skim Whole Genome Re-sequencing in Canola

Evaluation of the accuracy of imputed sequence variant genotypes and their utility for causal variant detection in cattle

Exome sequence genotype imputation in globally diverse hexaploid wheat accessions.

Exome sequencing highlights the role of wild-relative introgression in shaping the adaptive landscape of the wheat genome

Exploitation of data from breeding programs supports rapid implementation of genomic selection for key agronomic traits in perennial ryegrass.

Expression quantitative trait loci in sheep liver and muscle contribute to variations in meat traits

Genetic Contribution of Emmer Wheat ( Schrank) to Heat Tolerance of Bread Wheat

Genetic Diversity, Population Structure and Ancestral Origin of Australian Wheat

Genetic Gain and Inbreeding from Genomic Selection in a Simulated Commercial Breeding Program for Perennial Ryegrass.

Genome variants associated with RNA splicing variations in bovine are extensively shared between tissues.

Genome-Enabled Estimates of Additive and Nonadditive Genetic Variances and Prediction of Apple Phenotypes Across Environments

Genome-wide association studies dissect the G × E interaction for agronomic traits in a worldwide collection of safflowers (Carthamus tinctorius L.)

Genome-wide fine-mapping identifies pleiotropic and functional variants that predict many traits across global cattle populations

Genomic Prediction Using Prior Quantitative Trait Loci Information Reveals a Large Reservoir of Underutilised Blackleg Resistance in Diverse Canola (Brassica napus L.) Lines

Genomic Prediction and Genetic Correlation of Agronomic, Blackleg Disease, and Seed Quality Traits in Canola (Brassica napus L.).

Genomic Prediction of Rust Resistance in Tetraploid Wheat under Field and Controlled Environment Conditions

Genomic prediction for rust resistance in diverse wheat landraces.

Genomic prediction in animals and plants: simulation of data, validation, reporting, and benchmarking

Genomic prediction of reproduction traits for Merino sheep.

Genomic prediction of the polled and horned phenotypes in Merino sheep.

Genomic selection for recovery of original genetic background from hybrids of endangered and common breeds.

Genotyping-by-sequencing through transcriptomics: implementation in a range of crop species with varying reproductive habits and ploidy levels.

How old are quantitative trait loci and how widely do they segregate?

Improved accuracy of genomic prediction for dry matter intake of dairy cattle from combined European and Australian data sets.

Improving Genetic Gain with Genomic Selection in Autotetraploid Potato.

Imputation of missing genotypes from sparse to high density using long-range phasing.

Inbreeding in genome-wide selection

Insights into population genetics and evolution of polyploids and their ancestors.

Meta-analysis of genome-wide association studies for cattle stature identifies common genes that regulate body size in mammals

Meta-analysis of sequence-based association studies across three cattle breeds reveals 25 QTL for fat and protein percentages in milk at nucleotide resolution.

Mitigation of inbreeding while preserving genetic gain in genomic breeding programs for outbred plants.

Multiple-trait QTL mapping and genomic prediction for wool traits in sheep

Rapid Discovery of De Novo Deleterious Mutations in Cattle Enhances the Value of Livestock as Model Species

Rare Variants in Transcript and Potential Regulatory Regions Explain a Small Percentage of the Missing Heritability of Complex Traits in Cattle.

Scans for signatures of selection in Russian cattle breed genomes reveal new candidate genes for environmental adaptation and acclimation

Selection on Optimal Haploid Value Increases Genetic Gain and Preserves More Genetic Diversity Relative to Genomic Selection

Sheep genome functional annotation reveals proximal regulatory elements contributed to the evolution of modern breeds

The impact of genetic architecture on genome-wide evaluation methods

The importance of information on relatives for the prediction of genomic breeding values and the implications for the makeup of reference data sets in livestock breeding schemes

Whole-genome regression and prediction methods applied to plant and animal breeding

Whole-genome resequencing of two elite sires for the detection of haplotypes under selection in dairy cattle

Whole-genome sequencing of 234 bulls facilitates mapping of monogenic and complex traits in cattle