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List of works by Neha Varghese

1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life

scientific article published on 12 June 2017

A genomic catalog of Earth's microbiomes

scientific article published on 09 November 2020

Absence of Genome Reduction In Diverse, Facultative Endohyphal Bacteria

Absence of genome reduction in diverse, facultative endohyphal bacteria

scientific article

An improved high-quality draft genome sequence of Carnobacterium inhibens subsp. inhibens strain K1(T).

scientific article published on 08 September 2016

Application of Long Sequence Reads To Improve Genomes for Clostridium thermocellum AD2, Clostridium thermocellum LQRI, and Pelosinus fermentans R7.

scientific article published on 29 September 2016

Arboriscoccus pini gen. nov., sp. nov., an endophyte from a pine tree of the class Alphaproteobacteria, emended description of Geminicoccus roseus, and proposal of Geminicoccaceae fam. nov.

scientific article

Author Correction: A genomic catalog of Earth's microbiomes

correction of a scholarly article

Complete Genome Sequence for sp. Strain OR53 and Draft Genome Sequence for sp. Strain OR43, Two Bacteria Tolerant to Uranium

Complete Genome Sequence of Nitrosomonas cryotolerans ATCC 49181, a Phylogenetically Distinct Ammonia-Oxidizing Bacterium Isolated from Arctic Waters

scientific article published on 16 March 2017

Complete Genome Sequence of Serratia quinivorans Strain 124R, a Facultative Anaerobe Isolated on Organosolv Lignin as a Sole Carbon Source

Complete Genome Sequence of Thermoanaerobacterium sp. Strain RBIITD, a Butyrate- and Butanol-Producing Thermophile

scientific article

Complete genome of Nitrosospira briensis C-128, an ammonia-oxidizing bacterium from agricultural soil

scientific article

Complete genome sequence of Jiangella gansuensis strain YIM 002T (DSM 44835T), the type species of the genus Jiangella and source of new antibiotic compounds

scientific article published on 03 February 2017

Corrigendum: Genome Data Provides High Support for Generic Boundaries in Burkholderia Sensu Lato

scientific article

Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection.

scientific article published on 19 March 2018

Draft Genome Sequence of Frankia Strain G2, a Nitrogen-Fixing Actinobacterium Isolated from Casuarina equisetifolia and Able To Nodulate Actinorhizal Plants of the Order Rhamnales

scientific article published on 26 May 2016

Draft Genome Sequence of Heavy Metal-Resistant Cupriavidus alkaliphilus ASC-732T, Isolated from Agave Rhizosphere in the Northeast of Mexico

scientific article

Draft Genome Sequence of Methylocapsa palsarum NE2T, an Obligate Methanotroph from Subarctic Soil

scientific article

Draft genome of Paraburkholderia caballeronis TNe-841T, a free-living, nitrogen-fixing, tomato plant-associated bacterium

scientific article

Draft genome sequence of Actinotignum schaalii DSM 15541T: Genetic insights into the lifestyle, cell fitness and virulence

scientific article

Draft genome sequence of Marinobacterium rhizophilum CL-YJ9T (DSM 18822T), isolated from the rhizosphere of the coastal tidal-flat plant Suaeda japonica

scientific article

Erratum to: Permanent draft genome of Thermithiobacillus tepidarius DSM 3134T, a moderately thermophilic, obligately chemolithoautotrophic member of the Acidithiobacillia

scientific article published on 11 October 2016

Erratum: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life

scholarly article published in Nature Biotechnology

Genome Data Provides High Support for Generic Boundaries in Burkholderia Sensu Lato

scientific article

Genomes of ubiquitous marine and hypersaline Hydrogenovibrio , Thiomicrorhabdus and Thiomicrospira spp. encode a diversity of mechanisms to sustain chemolithoautotrophy in heterogeneous environments

article published in 2018

GlyGly-CTERM and rhombosortase: a C-terminal protein processing signal in a many-to-one pairing with a rhomboid family intramembrane serine protease

scientific article

High quality permanent draft genome sequence of Chryseobacterium bovis DSM 19482T, isolated from raw cow milk

scientific article

High-Quality Draft Genome Sequence of Kallotenue papyrolyticum JKG1T Reveals Broad Heterotrophic Capacity Focused on Carbohydrate and Amino Acid Metabolism

scientific article

High-Quality Draft Genome Sequence of Thermocrinis jamiesonii GBS1T Isolated from Great Boiling Spring, Nevada

scientific article published on 20 October 2016

High-Quality Draft Genome Sequences of Eight Bacteria Isolated from Fungus Gardens Grown by Trachymyrmex septentrionalis Ants

scientific article published on 19 July 2018

High-Quality Draft Genomes from Thermus caliditerrae YIM 77777 and T. tengchongensis YIM 77401, Isolates from Tengchong, China

scientific article published on 28 April 2016

High-quality draft genome sequence of Rhizobium mesoamericanum strain STM6155, a Mimosa pudica microsymbiont from New Caledonia.

scientific article

High-quality draft genome sequence of the Thermus amyloliquefaciens type strain YIM 77409(T) with an incomplete denitrification pathway

scientific article published on 27 February 2016

High-quality draft genome sequences of Pseudomonas monteilii DSM 14164T, Pseudomonas mosselii DSM 17497T, Pseudomonas plecoglossicida DSM 15088T, Pseudomonas taiwanensis DSM 21245T and Pseudomonas vranovensis DSM 16006T: taxonomic considerations

scientific article published on 29 October 2019

High-quality genome sequence of the radioresistant bacterium Deinococcus ficus KS 0460.

scientific article published on 28 July 2017

High-quality permanent draft genome sequence of the Bradyrhizobium elkanii type strain USDA 76T, isolated from Glycine max (L.) Merr.

scientific article

High-quality-draft genome sequence of the fermenting bacterium Anaerobium acetethylicum type strain GluBS11T (DSM 29698).

scientific article published on 20 February 2017

IMG 4 version of the integrated microbial genomes comparative analysis system

scientific article

IMG/M 4 version of the integrated metagenome comparative analysis system

scientific article published on 16 October 2013

IMG/M: integrated genome and metagenome comparative data analysis system

scientific article

Metagenomes and metatranscriptomes from boreal potential and actual acid sulfate soil materials

scientific article published on 16 October 2019

Microbial metagenomes and metatranscriptomes during a coastal phytoplankton bloom

scientific article published on 22 July 2019

Microbial species delineation using whole genome sequences

scientific article

Microbiomes of Velloziaceae from phosphorus-impoverished soils of the campos rupestres, a biodiversity hotspot

scientific article published on 31 July 2019

Molecular Dialogues between Early Divergent Fungi and Bacteria in an Antagonism versus a Mutualism

scientific article published on 08 September 2020

Near-Complete Genome Sequence of Thalassospira sp. Strain KO164 Isolated from a Lignin-Enriched Marine Sediment Microcosm

scientific article

One Complete and Seven Draft Genome Sequences of Subdivision 1 and 3 Acidobacteria Isolated from Soil

scientific article published on 30 January 2020

Permanent draft genome of Thermithiobaclillus tepidarius DSM 3134T, a moderately thermophilic, obligately chemolithoautotrophic member of the Acidithiobacillia

scientific article published on 26 September 2016

Permanent draft genome of Thiobacillus thioparus DSM 505T, an obligately chemolithoautotrophic member of the Betaproteobacteria

scientific article published on 19 January 2017

Protein structure determination using metagenome sequence data

scientific article

Publisher Correction: A genomic catalog of Earth's microbiomes

scientific article published on 18 November 2020

Relating the disease mutation spectrum to the evolution of the cystic fibrosis transmembrane conductance regulator (CFTR)

scientific article

The biogeographic differentiation of algal microbiomes in the upper ocean from pole to pole

scientific article published in 2021

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