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List of works by Klaus Mayer

A 4-gigabase physical map unlocks the structure and evolution of the complex genome of Aegilops tauschii, the wheat D-genome progenitor

scientific article published on 22 April 2013

A Genome-Wide Survey of Date Palm Cultivars Supports Two Major Subpopulations in Phoenix dactylifera

scientific article published on 8 May 2015

A chromosome conformation capture ordered sequence of the barley genome

scientific article

A first genetic map of date palm (Phoenix dactylifera) reveals long-range genome structure conservation in the palms

scientific article

A high density physical map of chromosome 1BL supports evolutionary studies, map-based cloning and sequencing in wheat

scientific article

A physical, genetic and functional sequence assembly of the barley genome ⬇️

scientific article published on October 17, 2012

A powerful tool for genome analysis in maize: development and evaluation of the high density 600 k SNP genotyping array.

scientific article

A sequence-ready physical map of barley anchored genetically by two million single-nucleotide polymorphisms

scientific article published on 15 November 2013

A synteny-based draft genome sequence of the forage grass Lolium perenne

scientific article published on 26 September 2015

Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation

scientific article

An improved genome release (version Mt4.0) for the model legume Medicago truncatula.

scientific article

Analysing complex Triticeae genomes - concepts and strategies.

scientific article published on 06 September 2013

Anchoring and ordering NGS contig assemblies by population sequencing (POPSEQ).

scientific article

Apollo2Go: a web service adapter for the Apollo genome viewer to enable distributed genome annotation

scientific article

Bacteria-triggered systemic immunity in barley is associated with WRKY and ETHYLENE RESPONSIVE FACTORs but not with salicylic acid.

scientific article

Barley: From Brittle to Stable Harvest

scientific article published in July 2015

Bioinformatics in the plant genomic and phenomic domain: The German contribution to resources, services and perspectives.

scientific article

Brassinosteroids Are Master Regulators of Gibberellin Biosynthesis in Arabidopsis.

scientific article

CREDO: a web-based tool for computational detection of conserved sequence motifs in noncoding sequences

scientific article published on 4 October 2005

Chloroplast phylogeny of Triticum/Aegilops species is not incongruent with an ancient homoploid hybrid origin of the ancestor of the bread wheat D-genome.

scientific article

Chromosome-scale genome assembly provides insights into rye biology, evolution and agronomic potential

scientific article published on 18 March 2021

Comparative analysis of the receptor-like kinase family in Arabidopsis and rice

scientific article published on 22 April 2004

Comparative sequence analysis of VRN1 alleles of Lolium perenne with the co-linear regions in barley, wheat, and rice

scientific article published on 12 November 2011

Comparative transcriptome analysis within the Lolium/Festuca species complex reveals high sequence conservation.

scientific article

Computational aspects underlying genome to phenome analysis in plants

article

Conserved synteny-based anchoring of the barley genome physical map.

scientific article

Convergent targeting of a common host protein-network by pathogen effectors from three kingdoms of life

scientific article

Crosstalk and differential response to abiotic and biotic stressors reflected at the transcriptional level of effector genes from secondary metabolism

scientific article published in April 2004

De novo 454 sequencing of barcoded BAC pools for comprehensive gene survey and genome analysis in the complex genome of barley

scientific article

Deep-sequencing of plant viral small RNAs reveals effective and widespread targeting of viral genomes.

scientific article

Distribution, functional impact, and origin mechanisms of copy number variation in the barley genome

scientific article published on 12 June 2013

DroughtDB: an expert-curated compilation of plant drought stress genes and their homologs in nine species

scientific article published on 15 May 2015

Durum wheat genome highlights past domestication signatures and future improvement targets

scientific article published on 08 April 2019

European maize genomes highlight intraspecies variation in repeat and gene content

scientific article published on 27 July 2020

Evidence for an ancient chromosomal duplication in Arabidopsis thaliana by sequencing and analyzing a 400-kb contig at the APETALA2 locus on chromosome 4.

scientific article published in February 1999

Examining the Transcriptional Response in Wheat Near-Isogenic Lines to Infection and Deoxynivalenol Treatment

scientific article

Experimental constraints on phreatic eruption processes at Whakaari (White Island volcano)

scholarly article by Klaus Mayer et al published September 2015 in Journal of Volcanology and Geothermal Research

Exploring the genomes: from Arabidopsis to crops

scientific article published on January 2011

Extensive and biased intergenomic nonreciprocal DNA exchanges shaped a nascent polyploid genome, Gossypium (cotton)

scientific article

Extensive signal integration by the phytohormone protein network

scientific article published on 01 July 2020

Fifteen million years of evolution in the Oryza genus shows extensive gene family expansion

scientific article published on 8 November 2013

Flow sorting and sequencing meadow fescue chromosome 4F.

scientific article published on 4 October 2013

Footprints of parasitism in the genome of the parasitic flowering plant Cuscuta campestris.

scientific article

Frequent gene movement and pseudogene evolution is common to the large and complex genomes of wheat, barley, and their relatives

scientific article published on 27 May 2011

From RNA-seq to large-scale genotyping - genomics resources for rye (Secale cereale L.).

scientific article

From plant genomes to phenotypes

article

Functional characterization of two clusters of Brachypodium distachyon UDP-glycosyltransferases encoding putative deoxynivalenol detoxification genes

scientific article published in July 2013

Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain

scientific article published on 30 July 2014

GABI-DUPLO: a collection of double mutants to overcome genetic redundancy in Arabidopsis thaliana

scientific article

Gene content and virtual gene order of barley chromosome 1H.

scientific article published on 19 August 2009

Gene selection from microarray data for cancer classification--a machine learning approach.

scientific article

Genes on B chromosomes: old questions revisited with new tools.

scientific article

Genetic analysis of DEFECTIVE KERNEL1 loop function in three-dimensional body patterning in Physcomitrella patens.

scientific article published on 2 September 2014

Genetic and genomic analysis of legume flowers and seeds.

scientific article published on 15 February 2006

Genome analyses reveal population structure and a purple stigma color gene candidate in finger millet

scientific article published in 2023

Genome mapping of seed-borne allergens and immunoresponsive proteins in wheat

scientific article published on 17 August 2018

Genome sequencing and analysis of the model grass Brachypodium distachyon

scientific article

Genome-wide in silico mapping of scaffold/matrix attachment regions in Arabidopsis suggests correlation of intragenic scaffold/matrix attachment regions with gene expression

scientific article published on June 2004

Genome‐wide association of dry (Tamar) date palm fruit color

scientific article published in 2023

Genomics-based high-resolution mapping of the BaMMV/BaYMV resistance gene rym11 in barley (Hordeum vulgare L.).

scientific article published on 2 March 2013

Hidden variation in polyploid wheat drives local adaptation

scientific article published on 09 August 2018

High-resolution mapping of the barley Ryd3 locus controlling tolerance to BYDV

High-throughput physical map anchoring via BAC-pool sequencing

scientific article published on 11 April 2015

How can we deliver the large plant genomes? Strategies and perspectives

scientific article

Identification and Characterization of Carboxylesterases from Brachypodium distachyon Deacetylating Trichothecene Mycotoxins

scientific article published on 25 December 2015

Identification of Early Nuclear Target Genes of Plastidial Redox Signals that Trigger the Long-Term Response of Arabidopsis to Light Quality Shifts

scientific article

Impact of natural genetic variation on the transcriptome of autotetraploid Arabidopsis thaliana

scientific article

Impact of transposable elements on genome structure and evolution in bread wheat

Intracompartmental and intercompartmental transcriptional networks coordinate the expression of genes for organellar functions

article

Joint Transcriptomic and Metabolomic Analyses Reveal Changes in the Primary Metabolism and Imbalances in the Subgenome Orchestration in the Bread Wheat Molecular Response to Fusarium graminearum.

scientific article

Large-scale cis-element detection by analysis of correlated expression and sequence conservation between Arabidopsis and Brassica oleracea

scientific article published on 06 October 2006

Light and Plastid Signals Regulate Different Sets of Genes in the Albino Mutant Pap7-1.

scientific article

Long-read sequence assembly: a technical evaluation in barley

scientific article published on 01 July 2021

MIPS: a database for genomes and protein sequences

scientific article published in January 1999

MIPS: analysis and annotation of genome information in 2007

scientific article (publication date: 2008)

MIPS: curated databases and comprehensive secondary data resources in 2010

scientific article

MIPSPlantsDB--plant database resource for integrative and comparative plant genome research

scientific article (publication date: 2007)

MOsDB: an integrated information resource for rice genomics

scientific article

Mass-spectrometry-based draft of the Arabidopsis proteome

scientific article published on 11 March 2020

Mechanical behaviour and failure modes in the Whakaari (White Island volcano) hydrothermal system, New Zealand

article

Meiotic recombination dynamics in plants with repeat-based holocentromeres shed light on the primary drivers of crossover patterning

scientific article published in 2024

Meta-analysis of retrograde signaling in Arabidopsis thaliana reveals a core module of genes embedded in complex cellular signaling networks

scientific article published on 9 April 2014

MicroRNAs coordinately regulate protein complexes

scientific article

Modulation of Ambient Temperature-Dependent Flowering in Arabidopsis thaliana by Natural Variation of FLOWERING LOCUS M.

scientific article published on 22 October 2015

Molecular and immunological characterization of ragweed (Ambrosia artemisiifolia L.) pollen after exposure of the plants to elevated ozone over a whole growing season

scientific article

Molecular characterisation of the STRUBBELIG-RECEPTOR FAMILY of genes encoding putative leucine-rich repeat receptor-like kinases in Arabidopsis thaliana.

scientific article

Multiple wheat genomes reveal global variation in modern breeding

scientific article published on 25 November 2020

Multiplex sequencing of bacterial artificial chromosomes for assembling complex plant genomes.

scientific article

Munich information center for protein sequences plant genome resources: a framework for integrative and comparative analyses 1(W).

scientific article published in July 2005

New insights into the wheat chromosome 4D structure and virtual gene order, revealed by survey pyrosequencing.

scientific article

Next-generation sequencing and syntenic integration of flow-sorted arms of wheat chromosome 4A exposes the chromosome structure and gene content

article

PGSB PlantsDB: updates to the database framework for comparative plant genome research

scientific article

PGSB/MIPS Plant Genome Information Resources and Concepts for the Analysis of Complex Grass Genomes

scientific article published on January 2016

PGSB/MIPS PlantsDB Database Framework for the Integration and Analysis of Plant Genome Data

scientific article

Phylogenomics reveals multiple losses of nitrogen-fixing root nodule symbiosis

scientific article published in Science

Plant genome sequencing - applications for crop improvement

scientific article published on 21 September 2013

PlantMarkers--a database of predicted molecular markers from plants

scientific article

Population genomic analysis of Aegilops tauschii identifies targets for bread wheat improvement

scientific article published on 01 November 2021

Proteomic and transcriptomic profiling of aerial organ development in Arabidopsis

scientific article published on 09 October 2020

Quantitative trait loci-dependent analysis of a gene co-expression network associated with Fusarium head blight resistance in bread wheat (Triticum aestivum L.).

scientific article

RNASeqExpressionBrowser--a web interface to browse and visualize high-throughput expression data.

scientific article

Red clover (Trifolium pratense L.) draft genome provides a platform for trait improvement

scientific article

Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres

scientific article published in December 2012

Reticulate evolution of the rye genome

scientific article published on 8 October 2013

Ribosome quality control is a central protection mechanism for yeast exposed to deoxynivalenol and trichothecin

scientific article

Role of WUSCHEL in regulating stem cell fate in the Arabidopsis shoot meristem.

scientific article

Selfish supernumerary chromosome reveals its origin as a mosaic of host genome and organellar sequences.

scientific article

Separating the wheat from the chaff - a strategy to utilize plant genetic resources from ex situ genebanks.

scientific article

Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.

scientific article published in December 2000

Sequence and analysis of the Arabidopsis genome.

scientific article

Sequence composition and genome organization of maize.

scholarly article

Sequence-based analysis of translocations and inversions in bread wheat (Triticum aestivum L.).

scientific article

Sequencing of BAC pools by different next generation sequencing platforms and strategies

scientific article

Significant sequence similarities in promoters and precursors of Arabidopsis thaliana non-conserved microRNAs

scientific article published on 10 August 2006

Slicing the wheat genome. Introduction

scientific article

Snipping polymorphisms from large EST collections in barley (Hordeum vulgare L.).

scientific article published on 23 August 2003

Spatiotemporal expression control correlates with intragenic scaffold matrix attachment regions (S/MARs) in Arabidopsis thaliana

scientific article

Sputnik: a database platform for comparative plant genomics

scientific article

Structural and functional partitioning of bread wheat chromosome 3B.

scientific article

Structure and architecture of the maize genome.

scientific article published in December 2005

Suppressed recombination and unique candidate genes in the divergent haplotype encoding Fhb1, a major Fusarium head blight resistance locus in wheat

scientific article published on 12 May 2016

TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools

scientific article published on 18 December 2019

The Arabidopsis Genome and Its Use in Cereal Genomics

The Arabidopsis lyrata genome sequence and the basis of rapid genome size change

scientific article

The Medicago genome provides insight into the evolution of rhizobial symbioses

scientific article

The P. patens chromosome-scale assembly reveals moss genome structure and evolution. ⬇️

scientific article

The Sorghum bicolor genome and the diversification of grasses

scientific article

The Spirodela polyrhiza genome reveals insights into its neotenous reduction fast growth and aquatic lifestyle

scientific article

The Systems Architecture of Molecular Memory in Poplar after Abiotic Stress

scientific article published on 31 January 2019

The barley pan-genome reveals the hidden legacy of mutation breeding

scientific article published on 25 November 2020

The big five of the monocot genomes

scientific article published on 08 February 2016

The complete nucleotide sequences of the 5 genetically distinct plastid genomes of Oenothera, subsection Oenothera: II. A microevolutionary view using bioinformatics and formal genetic data

scientific article

The complete nucleotide sequences of the five genetically distinct plastid genomes of Oenothera, subsection Oenothera: I. sequence evaluation and plastome evolution

scientific article

The genome sequence of African rice (Oryza glaberrima) and evidence for independent domestication.

scientific article

The perennial ryegrass GenomeZipper: targeted use of genome resources for comparative grass genomics

scientific article published on 26 November 2012

The pseudogenes of barley

scientific article

The repetitive landscape of the 5100 Mbp barley genome

scientific article published on 20 December 2017

The transcriptional landscape of polyploid wheat

scientific article

Towards a whole-genome sequence for rye (Secale cereale L.).

scientific article

Tracing the ancestry of modern bread wheats

scientific article published on 01 May 2019

Transcriptional similarities, dissimilarities, and conservation of cis-elements in duplicated genes of Arabidopsis.

scientific article

TriAnnot: A Versatile and High Performance Pipeline for the Automated Annotation of Plant Genomes

scientific article

Uneven chromosome contraction and expansion in the maize genome.

scientific article

Unlocking the barley genome by chromosomal and comparative genomics

scientific article published on 5 April 2011

Whole-genome profiling and shotgun sequencing delivers an anchored, gene-decorated, physical map assembly of bread wheat chromosome 6A.

scientific article published on 19 June 2014

Wild emmer genome architecture and diversity elucidate wheat evolution and domestication.

scientific article

chromoWIZ: a web tool to query and visualize chromosome-anchored genes from cereal and model genomes.

scientific article published on 10 December 2014

transPLANT Resources for Triticeae Genomic Data.

scientific article

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