Search filters

List of works by Daniel R Zerbino

A compendium of uniformly processed human gene expression and splicing quantitative trait loci

scientific article published on 07 September 2021

A new strategy for genome assembly using short sequence reads and reduced representation libraries

scientific article

A unifying model of genome evolution under parsimony

scientific article

An analysis of core deformations in protein superfamilies

scientific article published on 12 November 2004

An efficient conformational sampling method for homology modeling.

scientific article

Assemblathon 1: a competitive assessment of de novo short read assembly methods

scientific article

Building a pan-genome reference for a population

scientific article published on 7 January 2015

CHiCAGO: robust detection of DNA looping interactions in Capture Hi-C data

scientific article

Cactus: Algorithms for genome multiple sequence alignment

scientific article published on 10 June 2011

Comparative analysis of neutrophil and monocyte epigenomes

Core deformations in protein families: a physical perspective

Ensembl 2014

scientific article

Ensembl 2015

scientific article (publication date: 2015)

Ensembl 2016

scientific article

Ensembl 2017

scientific article

Ensembl 2018.

scientific article published on 16 November 2017

Ensembl 2019

scientific article published on 01 January 2019

Ensembl 2020

scientific article published on 01 January 2020

Ensembl 2021

scientific article published on 02 November 2020

Ensembl 2022

scientific article published on 19 October 2021

Ensembl core software resources: storage and programmatic access for DNA sequence and genome annotation

scientific article (publication date: 2017)

Ensembl regulation resources

scientific article published on 17 February 2016

FAANG, establishing metadata standards, validation and best practices for the farmed and companion animal community

scientific article published on 12 October 2018

GENCODE reference annotation for the human and mouse genomes

scientific article published on 01 January 2019

HAL: a hierarchical format for storing and analyzing multiple genome alignments

scientific article

Improvements to services at the European Nucleotide Archive

scientific article

Integrating genomes

scientific article published on April 2012

Lineage-Specific Genome Architecture Links Enhancers and Non-coding Disease Variants to Target Gene Promoters

scientific article

Oases:robustde novoRNA-seq assembly across the dynamic range of expression levels ⬇️

scientific article (publication date: 15 April 2012)

Pebble and rock band: heuristic resolution of repeats and scaffolding in the velvet short-read de novo assembler

scientific article

Punctuated bursts in human male demography inferred from 1,244 worldwide Y-chromosome sequences

scientific article

Sequence tube maps: making graph genomes intuitive to commuters

scientific article published on 01 December 2019

The NGS WikiBook: a dynamic collaborative online training effort with long-term sustainability

scientific article (publication date: September 2013)

The ensembl regulatory build

scientific article published on 24 March 2015

Using the Velvet de novo assembler for short-read sequencing technologies

scientific article

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

scientific article

WiggleTools: parallel processing of large collections of genome-wide datasets for visualization and statistical analysis

scientific article

Paulina is supported by:

About Paulina

Help