List of works by Nikos C. Kyrpides

1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life

scientific article published on 12 June 2017

A Comparison of Microbial Genome Web Portals

scientific article published in 2019

A Functional Mini-Integrase in a Two-Protein-type V-C CRISPR System ⬇️

scientific article published on 29 January 2019

A Genomic Encyclopedia of the Root Nodule Bacteria: assessing genetic diversity through a systematic biogeographic survey

scientific article

A TransientGCN4mRNA Destabilization FollowsGCN4Translational Derepression

scientific article published in Journal of Biological Chemistry

A call for standardized classification of metagenome projects

scientific article published on July 2010

A catalog of reference genomes from the human microbiome

scientific article

A changing of the guard

scientific article published in 2009

A comparative genomics perspective on the genetic content of the alkaliphilic haloarchaeon Natrialba magadii ATCC 43099T.

scientific article

A data analysis and coordination center for the human microbiome project.

scientific article

A ferredoxin-like domain in RNA polymerase 30/40-kDa subunits

scientific article published in May 1998

A framework for human microbiome research

scientific article

A genomic analysis of the archaeal system Ignicoccus hospitalis-Nanoarchaeum equitans

scientific article

A genomic catalog of Earth's microbiomes

scientific article published on 09 November 2020

A korarchaeal genome reveals insights into the evolution of the Archaea

scientific article

A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea

scientific article

A scoutRNA Is Required for Some Type V CRISPR-Cas Systems

scientific article published on 30 June 2020

A synthesis of bacterial and archaeal phenotypic trait data

scientific article published on 05 June 2020

A thermostable Cas9 with increased lifetime in human plasma

scientific article

A thermostable Cas9 with increased lifetime in human plasma

A unified catalog of 204,938 reference genomes from the human gut microbiome

scientific article published on 20 July 2020

Absence of Genome Reduction In Diverse, Facultative Endohyphal Bacteria

Absence of genome reduction in diverse, facultative endohyphal bacteria

scientific article

Alive and well at 100.

scientific article published on 25 February 2011

An experimental metagenome data management and analysis system

scientific article

An improved high-quality draft genome sequence of Carnobacterium inhibens subsp. inhibens strain K1(T).

scientific article published on 08 September 2016

Analysis of 1,000 Type-Strain Genomes Improves Taxonomic Classification of Bacteroidetes

scientific article published on 23 September 2019

Analysis of 1,000+ Type-Strain Genomes Substantially Improves Taxonomic Classification of Alphaproteobacteria

scientific article published on 07 April 2020

Analysis of the Thermotoga maritima genome combining a variety of sequence similarity and genome context tools ⬇️

scientific article

Annotation of metagenome short reads using proxygenes

scientific article published on August 2008

Antarctic archaea-virus interactions: metaproteome-led analysis of invasion, evasion and adaptation

scientific article

Application of Long Sequence Reads To Improve Genomes for Clostridium thermocellum AD2, Clostridium thermocellum LQRI, and Pelosinus fermentans R7.

scientific article published on 29 September 2016

Arboriscoccus pini gen. nov., sp. nov., an endophyte from a pine tree of the class Alphaproteobacteria, emended description of Geminicoccus roseus, and proposal of Geminicoccaceae fam. nov.

scientific article

Archaeal and bacterial hyperthermophiles: horizontal gene exchange or common ancestry?

article

Archaeal translation initiation revisited: the initiation factor 2 and eukaryotic initiation factor 2B alpha-beta-delta subunit families

scientific article

Atypical Divergence of SARS-CoV-2 Orf8 from Orf7a within the Coronavirus Lineage Suggests Potential Stealthy Viral Strategies in Immune Evasion

scientific article

Author Correction: A genomic catalog of Earth's microbiomes

correction of a scholarly article

Author Correction: Cryptic inoviruses revealed as pervasive in bacteria and archaea across Earth's biomes

scientific article published on 01 March 2020

Bringing large-scale multiple genome analysis one step closer: ScalaBLAST and beyond

COVID-19 pandemic reveals the peril of ignoring metadata standards

scientific article published on 19 June 2020

CRISPR Recognition Tool (CRT): a tool for automatic detection of clustered regularly interspaced palindromic repeats

scientific article (publication date: 18 June 2007)

CheckV assesses the quality and completeness of metagenome-assembled viral genomes

scientific article published on 21 December 2020

ClaMS: A Classifier for Metagenomic Sequences

scientific article

Comparative Genome Analysis in the Integrated Microbial Genomes (IMG) System

article

Comparative Genome Analysis in the Integrated Microbial Genomes (IMG) System

Comparative genome analysis of Bacillus cereus group genomes with Bacillus subtilis

scientific article published in September 2005

Comparative genomic analysis of the microbiome of herbivorous insects reveals eco-environmental adaptations: biotechnology applications

scientific article

Comparative metagenomic and metatranscriptomic analysis of hindgut paunch microbiota in wood- and dung-feeding higher termites

scientific article

Comparative metagenomics of hydrocarbon and methane seeps of the Gulf of Mexico.

scientific article published on 22 November 2017

Comparative transcriptomics between Synechococcus PCC 7942 and Synechocystis PCC 6803 provide insights into mechanisms of stress acclimation

scientific article

Comparing polysaccharide decomposition between the type strains Gramella echinicola KMM 6050(T) (DSM 19838(T)) and Gramella portivictoriae UST040801-001(T) (DSM 23547(T)), and emended description of Gramella echinicola Nedashkovskaya et al. 2005 eme

scientific article published on 03 June 2016

Comparison of the complete genome sequences of Pseudomonas syringae pv. syringae B728a and pv. tomato DC3000

scientific article

Complete Genome Sequence for sp. Strain OR53 and Draft Genome Sequence for sp. Strain OR43, Two Bacteria Tolerant to Uranium

Complete Genome Sequence of Alkaliphilus metalliredigens Strain QYMF, an Alkaliphilic and Metal-Reducing Bacterium Isolated from Borax-Contaminated Leachate Ponds

scientific article

Complete Genome Sequence of Anaeromyxobacter sp. Fw109-5, an Anaerobic, Metal-Reducing Bacterium Isolated from a Contaminated Subsurface Environment

scientific article

Complete Genome Sequence of Methanolinea tarda NOBI-1T, a Hydrogenotrophic Methanogen Isolated from Methanogenic Digester Sludge

scientific article

Complete Genome Sequence of Methanoregula formicica SMSPT, a Mesophilic Hydrogenotrophic Methanogen Isolated from a Methanogenic Upflow Anaerobic Sludge Blanket Reactor

scientific article

Complete Genome Sequence of Methanosphaerula palustris E1-9CT, a Hydrogenotrophic Methanogen Isolated from a Minerotrophic Fen Peatland

scientific article

Complete Genome Sequence of Nitrosomonas cryotolerans ATCC 49181, a Phylogenetically Distinct Ammonia-Oxidizing Bacterium Isolated from Arctic Waters

scientific article published on 16 March 2017

Complete Genome Sequence of Paenibacillus strain Y4.12MC10, a Novel Paenibacillus lautus strain Isolated from Obsidian Hot Spring in Yellowstone National Park

scientific article published on 27 July 2012

Complete Genome Sequence of Serratia quinivorans Strain 124R, a Facultative Anaerobe Isolated on Organosolv Lignin as a Sole Carbon Source

Complete Genome Sequence of Thermoanaerobacterium sp. Strain RBIITD, a Butyrate- and Butanol-Producing Thermophile

scientific article

Complete Genome Sequence of the Hyperthermophilic Sulfate-Reducing Bacterium Thermodesulfobacterium geofontis OPF15T

scientific article

Complete Genome Sequences of Caldicellulosiruptor sp. Strain Rt8.B8, Caldicellulosiruptor sp. Strain Wai35.B1, and "Thermoanaerobacter cellulolyticus"

scientific article published on 14 May 2015

Complete Genome of Enterobacteriaceae Bacterium Strain FGI 57, a Strain Associated with Leaf-Cutter Ant Fungus Gardens

scientific article published on January 2013

Complete Genome of Serratia sp. Strain FGI 94, a Strain Associated with Leaf-Cutter Ant Fungus Gardens

scientific article published on 14 March 2013

Complete Genome sequence of Burkholderia phymatum STM815(T), a broad host range and efficient nitrogen-fixing symbiont of Mimosa species

scientific article

Complete genome of Nitrosospira briensis C-128, an ammonia-oxidizing bacterium from agricultural soil

scientific article

Complete genome of the cellulolytic ruminal bacterium Ruminococcus albus 7.

scientific article

Complete genome sequence of "Enterobacter lignolyticus" SCF1

scientific article (publication date: 15 October 2011)

Complete genome sequence of "Thioalkalivibrio sulfidophilus" HL-EbGr7.

scientific article

Complete genome sequence of 'Thermobaculum terrenum' type strain (YNP1).

scientific article

Complete genome sequence of Acetohalobium arabaticum type strain (Z-7288)

scientific article

Complete genome sequence of Acidaminococcus fermentans type strain (VR4).

scientific article

Complete genome sequence of Acidimicrobium ferrooxidans type strain (ICP).

scientific article

Complete genome sequence of Actinosynnema mirum type strain (101).

scientific article

Complete genome sequence of Alicyclobacillus acidocaldarius type strain (104-IA)

scientific article

Complete genome sequence of Aminobacterium colombiense type strain (ALA-1).

scientific article

Complete genome sequence of Anabaena variabilis ATCC 29413.

scientific article

Complete genome sequence of Anaerococcus prevotii type strain (PC1).

scientific article

Complete genome sequence of Arcanobacterium haemolyticum type strain (11018)

scientific article

Complete genome sequence of Archaeoglobus profundus type strain (AV18)

scientific article

Complete genome sequence of Arcobacter nitrofigilis type strain (CI)

scientific article

Complete genome sequence of Arthrobacter phenanthrenivorans type strain (Sphe3) ⬇️

scientific article

Complete genome sequence of Atopobium parvulum type strain (IPP 1246)

scientific article

Complete genome sequence of Bacteroides helcogenes type strain (P 36-108).

scientific article

Complete genome sequence of Bacteroides salanitronis type strain (BL78).

scientific article

Complete genome sequence of Beutenbergia cavernae type strain (HKI 0122).

scientific article

Complete genome sequence of Brachybacterium faecium type strain (Schefferle 6-10).

scientific article

Complete genome sequence of Brachyspira murdochii type strain (56-150)

scientific article

Complete genome sequence of Calditerrivibrio nitroreducens type strain (Yu37-1)

scientific article

Complete genome sequence of Capnocytophaga ochracea type strain (VPI 2845).

scientific article

Complete genome sequence of Catenulispora acidiphila type strain (ID 139908).

scientific article

Complete genome sequence of Cellulomonas flavigena type strain (134).

scientific article

Complete genome sequence of Cellulophaga algicola type strain (IC166)

scientific article

Complete genome sequence of Cellulophaga lytica type strain (LIM-21).

scientific article

Complete genome sequence of Chitinophaga pinensis type strain (UQM 2034).

scientific article

Complete genome sequence of Conexibacter woesei type strain (ID131577).

scientific article

Complete genome sequence of Coraliomargarita akajimensis type strain (04OKA010-24).

scientific article

Complete genome sequence of Coriobacterium glomerans type strain (PW2(T)) from the midgut of Pyrrhocoris apterus L. (red soldier bug).

scientific article

Complete genome sequence of Cryptobacterium curtum type strain (12-3)

scientific article

Complete genome sequence of DSM 30083(T), the type strain (U5/41(T)) of Escherichia coli, and a proposal for delineating subspecies in microbial taxonomy

scientific article published in 2014

Complete genome sequence of Dehalobacter restrictus PER-K23(T.).

scientific article published on 30 July 2013

Complete genome sequence of Dehalogenimonas lykanthroporepellens type strain (BL-DC-9(T)) and comparison to "Dehalococcoides" strains

scientific article

Complete genome sequence of Deinococcus maricopensis type strain (LB-34). ⬇️

scientific article

Complete genome sequence of Denitrovibrio acetiphilus type strain (N2460)

scientific article

Complete genome sequence of Desulfarculus baarsii type strain (2st14).

scientific article

Complete genome sequence of Desulfobulbus propionicus type strain (1pr3)

scientific article

Complete genome sequence of Desulfohalobium retbaense type strain (HR(100)).

scientific article

Complete genome sequence of Desulfomicrobium baculatum type strain (X)

scientific article

Complete genome sequence of Desulfotomaculum acetoxidans type strain (5575)

scientific article

Complete genome sequence of Desulfurivibrio alkaliphilus strain AHT2(T), a haloalkaliphilic sulfidogen from Egyptian hypersaline alkaline lakes

scientific article

Complete genome sequence of Desulfurococcus fermentans, a hyperthermophilic cellulolytic crenarchaeon isolated from a freshwater hot spring in Kamchatka, Russia

scientific article

Complete genome sequence of Desulfurococcus mucosus type strain (O7/1). ⬇️

scientific article

Complete genome sequence of Dyadobacter fermentans type strain (NS114)

scientific article

Complete genome sequence of Eggerthella lenta type strain (IPP VPI 0255).

scientific article

Complete genome sequence of Enterobacter sp. IIT-BT 08: A potential microbial strain for high rate hydrogen production

scientific article (publication date: 20 December 2013)

Complete genome sequence of Ferrimonas balearica type strain (PAT).

scientific article

Complete genome sequence of Ferroglobus placidus AEDII12DO

scientific article

Complete genome sequence of Geodermatophilus obscurus type strain (G-20)

scientific article

Complete genome sequence of Gordonia bronchialis type strain (3410).

scientific article

Complete genome sequence of Haliangium ochraceum type strain (SMP-2)

scientific article

Complete genome sequence of Haliscomenobacter hydrossis type strain (O)

scientific article

Complete genome sequence of Halogeometricum borinquense type strain (PR3)

scientific article

Complete genome sequence of Halomicrobium mukohataei type strain (arg-2)

scientific article

Complete genome sequence of Halopiger xanaduensis type strain (SH-6(T)).

scientific article

Complete genome sequence of Halorhabdus utahensis type strain (AX-2)

scientific article

Complete genome sequence of Haloterrigena turkmenica type strain (4k)

scientific article

Complete genome sequence of Hirschia baltica type strain (IFAM 1418(T))

scientific article

Complete genome sequence of Hydrogenobacter thermophilus type strain (TK-6)

scientific article

Complete genome sequence of Ignisphaera aggregans type strain (AQ1.S1)

scientific article

Complete genome sequence of Ilyobacter polytropus type strain (CuHbu1). ⬇️

scientific article

Complete genome sequence of Intrasporangium calvum type strain (7 KIP).

scientific article

Complete genome sequence of Isosphaera pallida type strain (IS1B).

scientific article

Complete genome sequence of Jiangella gansuensis strain YIM 002T (DSM 44835T), the type species of the genus Jiangella and source of new antibiotic compounds

scientific article published on 03 February 2017

Complete genome sequence of Jonesia denitrificans type strain (Prevot 55134)

scientific article

Complete genome sequence of Kangiella koreensis type strain (SW-125).

scientific article

Complete genome sequence of Kribbella flavida type strain (IFO 14399).

scientific article

Complete genome sequence of Kytococcus sedentarius type strain (541).

scientific article

Complete genome sequence of Leadbetterella byssophila type strain (4M15).

scientific article

Complete genome sequence of Leptotrichia buccalis type strain (C-1013-b).

scientific article

Complete genome sequence of Mahella australiensis type strain (50-1 BON).

scientific article

Complete genome sequence of Marinomonas posidonica type strain (IVIA-Po-181(T)).

scientific article published on 27 September 2012

Complete genome sequence of Marivirga tractuosa type strain (H-43) ⬇️

scientific article

Complete genome sequence of Meiothermus ruber type strain (21)

scientific article

Complete genome sequence of Meiothermus silvanus type strain (VI-R2)

scientific article

Complete genome sequence of Mesorhizobium australicum type strain (WSM2073(T)).

scientific article

Complete genome sequence of Mesorhizobium australicum type strain (WSM2073T)

Complete genome sequence of Mesorhizobium ciceri bv. biserrulae type strain (WSM1271(T))

scientific article

Complete genome sequence of Mesorhizobium opportunistum type strain WSM2075(T.).

scientific article

Complete genome sequence of Methanocorpusculum labreanum type strain Z

scientific article

Complete genome sequence of Methanoculleus marisnigri Romesser et al. 1981 type strain JR1

scientific article

Complete genome sequence of Methanoplanus petrolearius type strain (SEBR 4847)

scientific article

Complete genome sequence of Methanospirillum hungatei type strain JF1.

scientific article

Complete genome sequence of Methanothermus fervidus type strain (V24S)

scientific article

Complete genome sequence of Mycobacterium sp. strain (Spyr1) and reclassification to Mycobacterium gilvum Spyr1.

scientific article published on October 2011

Complete genome sequence of Nakamurella multipartita type strain (Y-104).

scientific article

Complete genome sequence of Nitratifractor salsuginis type strain (E9I37-1).

scientific article

Complete genome sequence of Nitrosomonas sp. Is79, an ammonia oxidizing bacterium adapted to low ammonium concentrations

scientific article published on 25 February 2013

Complete genome sequence of Nocardiopsis dassonvillei type strain (IMRU 509).

scientific article

Complete genome sequence of Oceanithermus profundus type strain (506) ⬇️

scientific article

Complete genome sequence of Odoribacter splanchnicus type strain (1651/6). ⬇️

scientific article

Complete genome sequence of Olsenella uli type strain (VPI D76D-27C)

scientific article

Complete genome sequence of Paludibacter propionicigenes type strain (WB4).

scientific article

Complete genome sequence of Pedobacter heparinus type strain (HIM 762-3).

scientific article

Complete genome sequence of Pirellula staleyi type strain (ATCC 27377)

scientific article

Complete genome sequence of Planctomyces brasiliensis type strain (DSM 5305(T)), phylogenomic analysis and reclassification of Planctomycetes including the descriptions of Gimesia gen. nov., Planctopirus gen. nov. and Rubinisphaera gen. nov. and eme

scientific article

Complete genome sequence of Planctomyces limnophilus type strain (Mü 290).

scientific article

Complete genome sequence of Polynucleobacter necessarius subsp. asymbioticus type strain (QLW-P1DMWA-1(T)).

scientific article

Complete genome sequence of Rhizobium leguminosarum bv trifolii strain WSM2304, an effective microsymbiont of the South American clover Trifolium polymorphum

scientific article

Complete genome sequence of Rhizobium leguminosarum bv. trifolii strain WSM1325, an effective microsymbiont of annual Mediterranean clovers

scientific article (publication date: 15 June 2010)

Complete genome sequence of Rhodospirillum rubrum type strain (S1).

scientific article

Complete genome sequence of Rhodothermus marinus type strain (R-10).

scientific article

Complete genome sequence of Riemerella anatipestifer type strain (ATCC 11845).

scientific article

Complete genome sequence of Riemerella anatipestifer type strain (ATCC 11845T)

article

Complete genome sequence of Saccharomonospora viridis type strain (P101).

scientific article

Complete genome sequence of Sanguibacter keddieii type strain (ST-74)

scientific article

Complete genome sequence of Sebaldella termitidis type strain (NCTC 11300).

scientific article

Complete genome sequence of Segniliparus rotundus type strain (CDC 1076)

scientific article

Complete genome sequence of Serratia plymuthica strain AS12.

scientific article

Complete genome sequence of Slackia heliotrinireducens type strain (RHS 1)

scientific article

Complete genome sequence of Sphaerobacter thermophilus type strain (S 6022)

scientific article

Complete genome sequence of Spirochaeta smaragdinae type strain (SEBR 4228).

scientific article

Complete genome sequence of Spirosoma linguale type strain (1)

scientific article

Complete genome sequence of Stackebrandtia nassauensis type strain (LLR-40K-21).

scientific article

Complete genome sequence of Staphylothermus hellenicus P8

scientific article

Complete genome sequence of Staphylothermus marinus Stetter and Fiala 1986 type strain F1

scientific article

Complete genome sequence of Streptobacillus moniliformis type strain (9901)

scientific article

Complete genome sequence of Streptosporangium roseum type strain (NI 9100).

scientific article

Complete genome sequence of Sulfurimonas autotrophica type strain (OK10).

scientific article

Complete genome sequence of Sulfurospirillum deleyianum type strain (5175).

scientific article

Complete genome sequence of Syntrophobotulus glycolicus type strain (FlGlyR).

scientific article

Complete genome sequence of Syntrophobotulus glycolicus type strain (FlGlyRT)

article

Complete genome sequence of Syntrophothermus lipocalidus type strain (TGB-C1)

scientific article

Complete genome sequence of Thauera aminoaromatica strain MZ1T

scientific article

Complete genome sequence of Thermaerobacter marianensis type strain (7p75a)

scientific article

Complete genome sequence of Thermanaerovibrio acidaminovorans type strain (Su883).

scientific article

Complete genome sequence of Thermobispora bispora type strain (R51).

scientific article

Complete genome sequence of Thermocrinis albus type strain (HI 11/12)

scientific article

Complete genome sequence of Thermomonospora curvata type strain (B9).

scientific article

Complete genome sequence of Thermosediminibacter oceani type strain (JW/IW-1228P)

scientific article

Complete genome sequence of Thermosphaera aggregans type strain (M11TL)

scientific article

Complete genome sequence of Thioalkalivibrio paradoxus type strain ARh 1(T), an obligately chemolithoautotrophic haloalkaliphilic sulfur-oxidizing bacterium isolated from a Kenyan soda lake

scientific article published on 19 November 2015

Complete genome sequence of Thioalkalivibrio sp. K90mix

scientific article

Complete genome sequence of Tolumonas auensis type strain (TA 4)

scientific article published on 23 September 2011

Complete genome sequence of Treponema succinifaciens type strain (6091).

scientific article

Complete genome sequence of Truepera radiovictrix type strain (RQ-24)

scientific article

Complete genome sequence of Tsukamurella paurometabola type strain (no. 33).

scientific article

Complete genome sequence of Veillonella parvula type strain (Te3)

scientific article

Complete genome sequence of Vulcanisaeta distributa type strain (IC-017)

scientific article

Complete genome sequence of Weeksella virosa type strain (9751).

scientific article

Complete genome sequence of Xylanimonas cellulosilytica type strain (XIL07)

scientific article

Complete genome sequence of the Antarctic Halorubrum lacusprofundi type strain ACAM 34.

scientific article published on 10 September 2016

Complete genome sequence of the Medicago microsymbiont Ensifer (Sinorhizobium) medicae strain WSM419

scientific article (publication date: 28 January 2010)

Complete genome sequence of the Thermophilic Bacterium Exiguobacterium sp. AT1b

scientific article

Complete genome sequence of the acetate-degrading sulfate reducer Desulfobacca acetoxidans type strain (ASRB2).

scientific article

Complete genome sequence of the aerobic marine methanotroph Methylomonas methanica MC09.

scientific article published on December 2011

Complete genome sequence of the aerobic, heterotroph Marinithermus hydrothermalis type strain (T1(T)) from a deep-sea hydrothermal vent chimney

scientific article

Complete genome sequence of the anaerobic, halophilic alkalithermophile Natranaerobius thermophilus JW/NM-WN-LF.

scientific article

Complete genome sequence of the aquatic bacterium Runella slithyformis type strain (LSU 4(T)).

scientific article

Complete genome sequence of the bile-resistant pigment-producing anaerobe Alistipes finegoldii type strain (AHN2437(T)).

scientific article published on 15 April 2013

Complete genome sequence of the ethanol-producing Zymomonas mobilis subsp. mobilis centrotype ATCC 29191.

scientific article

Complete genome sequence of the extremely halophilic Halanaerobium praevalens type strain (GSL)

scientific article

Complete genome sequence of the facultatively anaerobic, appendaged bacterium Muricauda ruestringensis type strain (B1(T)).

scientific article

Complete genome sequence of the facultatively chemolithoautotrophic and methylotrophic alpha Proteobacterium Starkeya novella type strain (ATCC 8093(T)).

scientific article

Complete genome sequence of the facultatively chemolithoautotrophic and methylotrophic alpha Proteobacterium Starkeya novella type strain (ATCC 8093T)

Complete genome sequence of the filamentous gliding predatory bacterium Herpetosiphon aurantiacus type strain (114-95(T)).

scientific article

Complete genome sequence of the gliding freshwater bacterium Fluviicola taffensis type strain (RW262).

scientific article

Complete genome sequence of the gliding, heparinolytic Pedobacter saltans type strain (113)

scientific article published on 23 September 2011

Complete genome sequence of the haloalkaliphilic, obligately chemolithoautotrophic thiosulfate and sulfide-oxidizing γ-proteobacterium Thioalkalimicrobium cyclicum type strain ALM 1 (DSM 14477(T)).

scientific article published on 03 June 2016

Complete genome sequence of the halophilic and highly halotolerant Chromohalobacter salexigens type strain (1H11(T)).

scientific article

Complete genome sequence of the halophilic bacterium Spirochaeta africana type strain (Z-7692(T)) from the alkaline Lake Magadi in the East African Rift

scientific article published on 20 May 2013

Complete genome sequence of the hyperthermophilic chemolithoautotroph Pyrolobus fumarii type strain (1A)

scientific article

Complete genome sequence of the lignin-degrading bacterium Klebsiella sp. strain BRL6-2.

scientific article

Complete genome sequence of the marine methyl-halide oxidizing Leisingera methylohalidivorans type strain (DSM 14336(T)), a representative of the Roseobacter clade

scientific article published on 04 October 2013

Complete genome sequence of the melanogenic marine bacterium Marinomonas mediterranea type strain (MMB-1(T))

scientific article

Complete genome sequence of the moderate thermophile Anaerobaculum mobile type strain (NGA(T)).

scientific article published on 15 April 2013

Complete genome sequence of the moderately thermophilic mineral-sulfide-oxidizing firmicute Sulfobacillus acidophilus type strain (NAL(T)).

scientific article published on 20 July 2012

Complete genome sequence of the orange-red pigmented, radioresistant Deinococcus proteolyticus type strain (MRP(T)).

scientific article

Complete genome sequence of the phenanthrene-degrading soil bacterium Delftia acidovorans Cs1-4

scientific article published on 15 August 2015

Complete genome sequence of the plant-associated Serratia plymuthica strain AS13.

scientific article published on 26 September 2012

Complete genome sequence of the rapeseed plant-growth promoting Serratia plymuthica strain AS9

scientific article

Complete genome sequence of the sulfate-reducing firmicute Desulfotomaculum ruminis type strain (DL(T))

scientific article published on 11 December 2012

Complete genome sequence of the sulfur compounds oxidizing chemolithoautotroph Sulfuricurvum kujiense type strain (YK-1(T))

scientific article

Complete genome sequence of the termite hindgut bacterium Spirochaeta coccoides type strain (SPN1(T)), reclassification in the genus Sphaerochaeta as Sphaerochaeta coccoides comb. nov. and emendations of the family Spirochaetaceae and the genus Spha

scientific article

Complete genome sequence of the thermophilic sulfate-reducing ocean bacterium Thermodesulfatator indicus type strain (CIR29812(T))

scientific article

Complete genome sequence of the thermophilic sulfur-reducer Desulfurobacterium thermolithotrophum type strain (BSA(T)) from a deep-sea hydrothermal vent

scientific article

Complete genome sequence of the thermophilic sulfur-reducer Hippea maritima type strain (MH(2))

scientific article

Complete genome sequence of the thermophilic, piezophilic, heterotrophic bacterium Marinitoga piezophila KA3

scientific article

Complete genome sequences for the anaerobic, extremely thermophilic plant biomass-degrading bacteria Caldicellulosiruptor hydrothermalis, Caldicellulosiruptor kristjanssonii, Caldicellulosiruptor kronotskyensis, Caldicellulosiruptor owensensis, and C

article

Complete genome sequences of Desulfosporosinus orientis DSM765T, Desulfosporosinus youngiae DSM17734T, Desulfosporosinus meridiei DSM13257T, and Desulfosporosinus acidiphilus DSM22704T

scientific article

Complete genome sequences of six strains of the genus Methylobacterium

scientific article

Consent insufficient for data release-Response

scientific article published on 01 May 2019

Contrasting Pathways for Anaerobic Methane Oxidation in Gulf of Mexico Cold Seep Sediments

scientific article published on 01 January 2019

Correction to: Towards a balanced view of the bacterial tree of life

scientific article published on 15 November 2017

Correction: Comparative Genomic Analysis of the Microbiome of Herbivorous Insects Reveals Eco-Environmental Adaptations: Biotechnology Applications.

scientific article published on 5 February 2013

Correction: Direct Comparisons of Illumina vs. Roche 454 Sequencing Technologies on the Same Microbial Community DNA Sample

scientific article published in PLoS ONE

Corrigendum: Genome Data Provides High Support for Generic Boundaries in Burkholderia Sensu Lato.

scientific article

Corrigendum: Genome-Based Taxonomic Classification of Bacteroidetes.

scientific article published on 21 February 2018

Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea

scientific article published in February 2018

Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea

article

Critical Assessment of Metagenome Interpretation − a benchmark of computational metagenomics software

article

Critical Assessment of Metagenome Interpretation-a benchmark of metagenomics software.

scientific article published on 2 October 2017

Cross-talk between catalytic and regulatory elements in a DEAD motor domain is essential for SecA function

scientific article

Crowdsourcing and curation: perspectives from biology and natural language processing

scientific article

Cryptic inoviruses revealed as pervasive in bacteria and archaea across Earth's biomes

scientific article published on 22 July 2019

Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection.

scientific article published on 19 March 2018

Data shopping in an open marketplace: Introducing the Ontogrator web application for marking up data using ontologies and browsing using facets

scientific article

Description of Alicyclobacillus montanus sp. nov., a mixotrophic bacterium isolated from acidic hot springs.

scientific article published on 20 March 2018

Description of Trichococcus ilyis sp. nov. by combined physiological and in silico genome hybridization analyses

scientific article

Different Molecular Mechanisms Lead to Same Endpoints with Different Function: TNF-α Induces Non Functional CSF-1 Receptors on HL-60 Cells in Contrast to Interfer on-γ

scientific article published on 01 January 1992

Direct comparisons of Illumina vs. Roche 454 sequencing technologies on the same microbial community DNA sample

scientific article

Discovery of Novel Plant Interaction Determinants from the Genomes of 163 Root Nodule Bacteria

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Dissecting the dominant hot spring microbial populations based on community-wide sampling at single-cell genomic resolution

scientific article published in May 2022

Diversity, evolution, and classification of virophages uncovered through global metagenomics

scientific article published on 10 December 2019

Draft Genome Sequence of Frankia Strain G2, a Nitrogen-Fixing Actinobacterium Isolated from Casuarina equisetifolia and Able To Nodulate Actinorhizal Plants of the Order Rhamnales

scientific article published on 26 May 2016

Draft Genome Sequence of Frankia sp. Strain BCU110501, a Nitrogen-Fixing Actinobacterium Isolated from Nodules of Discaria trinevis

scientific article

Draft Genome Sequence of Frankia sp. Strain BMG5.12, a Nitrogen-Fixing Actinobacterium Isolated from Tunisian Soils

scientific article published on 11 July 2013

Draft Genome Sequence of Frankia sp. Strain DC12, an Atypical, Noninfective, Ineffective Isolate from Datisca cannabina

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Draft Genome Sequence of Heavy Metal-Resistant Cupriavidus alkaliphilus ASC-732T, Isolated from Agave Rhizosphere in the Northeast of Mexico

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Draft Genome Sequence of Methylocapsa palsarum NE2T, an Obligate Methanotroph from Subarctic Soil

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Draft Genome Sequence of Methyloferula stellata AR4, an Obligate Methanotroph Possessing Only a Soluble Methane Monooxygenase

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Draft Genome Sequence of Monaibacterium marinum C7T, Isolated from Seawater from the Menai Straits, Wales, United Kingdom

scientific article published in February 2018

Draft Genome Sequence of Pseudomonas azotifigens Strain DSM 17556T (6H33bT), a Nitrogen Fixer Strain Isolated from a Compost Pile

scientific article published on 31 October 2013

Draft Genome Sequence of Yokenella regensburgei Strain WCD67, Isolated from the Boxelder Bug

scientific article published on 09 April 2020

Draft Genome Sequence of an Oscillatorian Cyanobacterium, Strain ESFC-1

scientific article published on August 2013

Draft Genome Sequence of the Cellulolytic and Xylanolytic Thermophile Clostridium clariflavum Strain 4-2a

scientific article published on 23 July 2015

Draft Genome Sequence of the Moderately Halophilic Methanotroph Methylohalobius crimeensis Strain 10Ki

scientific article published on 11 June 2015

Draft Genome Sequences of Gammaproteobacterial Methanotrophs Isolated from Marine Ecosystems

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Draft Genome Sequences of New Isolates and the Known Species of the Family Microbacteriaceae Associated with Plants

scientific article published on 20 September 2018

Draft Genome Sequences of Three Strains of a Novel Rhizobiales Species Isolated from Forest Soil

scientific article published in February 2018

Draft Genome of Burkholderia cenocepacia TAtl-371, a Strain from the Burkholderia cepacia Complex Retains Antagonism in Different Carbon and Nitrogen Sources

scientific article published on 28 February 2019

Draft genome and description of Consotaella salsifontis gen. nov. sp. nov., a halophilic, free-living, nitrogen-fixing alphaproteobacterium isolated from an ancient terrestrial saline spring

scientific article published on 6 September 2017

Draft genome of Paraburkholderia caballeronis TNe-841T, a free-living, nitrogen-fixing, tomato plant-associated bacterium

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Draft genome of Rosenbergiella nectarea strain 8N4T provides insights into the potential role of this species in its plant host

scientific article published on 06 April 2020

Draft genome sequence of Actinotignum schaalii DSM 15541T: Genetic insights into the lifestyle, cell fitness and virulence

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Draft genome sequence of Chryseobacterium limigenitum SUR2(T) (LMG 28734(T)) isolated from dehydrated sludge

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Draft genome sequence of Dethiobacter alkaliphilus strain AHT1T, a gram-positive sulfidogenic polyextremophile

scientific article published on 21 September 2017

Draft genome sequence of Dethiosulfovibrio salsuginis DSM 21565T an anaerobic, slightly halophilic bacterium isolated from a Colombian saline spring

scientific article published on 20 December 2017

Draft genome sequence of Frankia sp. strain CN3, an atypical, noninfective (Nod-) ineffective (Fix-) isolate from Coriaria nepalensis

scientific article published on 14 March 2013

Draft genome sequence of Frankia sp. strain QA3, a nitrogen-fixing actinobacterium isolated from the root nodule of Alnus nitida

scientific article published on 21 March 2013

Draft genome sequence of Halomonas lutea strain YIM 91125(T) (DSM 23508(T)) isolated from the alkaline Lake Ebinur in Northwest China

scientific article

Draft genome sequence of Marinobacterium rhizophilum CL-YJ9T (DSM 18822T), isolated from the rhizosphere of the coastal tidal-flat plant Suaeda japonica

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Draft genome sequence of Pseudomonas extremaustralis strain USBA-GBX 515 isolated from Superparamo soil samples in Colombian Andes

scientific article published on 15 December 2017

Draft genome sequence of marine alphaproteobacterial strain HIMB11, the first cultivated representative of a unique lineage within the Roseobacter clade possessing an unusually small genome

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Draft genome sequence of strain HIMB100, a cultured representative of the SAR116 clade of marine Alphaproteobacteria

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Draft genome sequence of the cellulolytic endophyte Chitinophaga costaii A37T2T.

scientific article published on 6 September 2017

Draft genome sequence of type strain HBR26(T) and description of Rhizobium aethiopicum sp. nov

scientific article (publication date: 2017)

Draft genome sequences of 10 strains of the genus exiguobacterium

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Draft genome sequences of Bradyrhizobium shewense sp. nov. ERR11T and Bradyrhizobium yuanmingense CCBAU 10071T.

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Draft sequencing and comparative genomics of Xylella fastidiosa strains reveal novel biological insights

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Empirical Comparison of Visualization Tools for Larger-Scale Network Analysis

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Engineering Escherichia coli for biodiesel production utilizing a bacterial fatty acid methyltransferase

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Erratum to: Complete genome sequence of Atopobium parvulum type strain (IPP 1246).

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Erratum to: Complete genome sequence of Pirellula staleyi type strain (ATCC 27377)

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Erratum to: Permanent draft genome of Thermithiobacillus tepidarius DSM 3134T, a moderately thermophilic, obligately chemolithoautotrophic member of the Acidithiobacillia

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Erratum to: The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4).

scientific article published on 21 March 2016

Erratum: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life

scholarly article published in Nature Biotechnology

Erratum: The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus

scientific article published in Nature

Errors in Genome Reviews

scientific article published on 01 September 1998

Establishment of computational biology in Greece and Cyprus: Past, present, and future

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Estimating DNA coverage and abundance in metagenomes using a gamma approximation

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Evolution of a multi-step phosphorelay signal transduction system in Ensifer: recruitment of the sigma factor RpoN and a novel enhancer-binding protein triggers acid-activated gene expression

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Evolutionary implications of duplications and Balbiani rings in Drosophila. A study of Drosophila serrata.

scientific article published in August 1990

Expanding the genomic encyclopedia of Actinobacteria with 824 isolate reference genomes

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Experimental Determination and System Level Analysis of Essential Genes in Escherichia coli MG1655

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Facile Recoding of Selenocysteine in Nature

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Faunimonas pinastri gen. nov., sp. nov., an endophyte from a pine tree of the family Pleomorphomonadaceae, class Alphaproteobacteria ⬇️

scientific article published on 19 December 2022

Feathermoss and epiphytic Nostoc cooperate differently: expanding the spectrum of plant-cyanobacteria symbiosis

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Fifteen years of microbial genomics: meeting the challenges and fulfilling the dream

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Finished Genome of Zymomonas mobilis subsp. mobilis Strain CP4, an Applied Ethanol Producer

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Focus:Synergistetes

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Frigoriflavimonas asaccharolytica gen. nov., sp. nov., a novel psychrophilic esterase and protease producing bacterium isolated from Antarctica

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Functional and genomic diversity of methylotrophic Rhodocyclaceae: description of Methyloversatilis discipulorum sp. nov.

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Functional genomics of novel secondary metabolites from diverse cyanobacteria using untargeted metabolomics.

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GSC 9: Open discussion of session: Unifying concepts in genomic annotation standards

Gene Calling Standards

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Gene context analysis in the Integrated Microbial Genomes (IMG) data management system

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GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes

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Genome Data Provides High Support for Generic Boundaries in Burkholderia Sensu Lato

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Genome Sequence of Arenibacter algicola Strain TG409, a Hydrocarbon-Degrading Bacterium Associated with Marine Eukaryotic Phytoplankton

scientific article published on 04 August 2016

Genome Sequence of Halomonas sp. Strain MCTG39a, a Hydrocarbon-Degrading and Exopolymeric Substance-Producing Bacterium

scientific article published on 16 July 2015

Genome Sequence of Marinobacter sp. Strain MCTG268 Isolated from the Cosmopolitan Marine Diatom Skeletonema costatum

scientific article published on 08 September 2016

Genome Sequence of Oceanicola sp. Strain MCTG156(1a), Isolated from a Scottish Coastal Phytoplankton Net Sample

scientific article published on 10 August 2017

Genome Sequence of Polycyclovorans algicola Strain TG408, an Obligate Polycyclic Aromatic Hydrocarbon-Degrading Bacterium Associated with Marine Eukaryotic Phytoplankton

scientific article

Genome Sequence of Porticoccus hydrocarbonoclasticus Strain MCTG13d, an Obligate Polycyclic Aromatic Hydrocarbon-Degrading Bacterium Associated with Marine Eukaryotic Phytoplankton

scientific article published on 18 June 2015

Genome Sequence of Roseovarius sp. Strain MCTG156(2b) Isolated from a Phytoplankton Net Trawl on the Scottish West Coast

scientific article published on 31 August 2017

Genome Sequence of Streptomyces viridosporus Strain T7A ATCC 39115, a Lignin-Degrading Actinomycete

scientific article (publication date: 5 July 2013)

Genome Sequence of Thermofilum pendens Reveals an Exceptional Loss of Biosynthetic Pathways without Genome Reduction

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Genome Sequence of Verrucomicrobium sp. Strain GAS474, a Novel Bacterium Isolated from Soil

scientific article published on 25 January 2018

Genome Sequence of the Alkaline-Tolerant Cellulomonas sp. Strain FA1.

scientific article published on 18 June 2015

Genome Sequence of the ethene- and vinyl chloride-oxidizing actinomycete Nocardioides sp. strain JS614

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Genome Sequences of Actinobacteria from Extreme Environments in Colombia

scholarly article published December 2018

Genome analyses of the carboxydotrophic sulfate-reducers Desulfotomaculum nigrificans and Desulfotomaculum carboxydivorans and reclassification of Desulfotomaculum caboxydivorans as a later synonym of Desulfotomaculum nigrificans

scientific article published in March 2014

Genome analysis of Desulfotomaculum gibsoniae strain Groll(T) a highly versatile Gram-positive sulfate-reducing bacterium

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Genome analysis of Desulfotomaculum kuznetsovii strain 17(T) reveals a physiological similarity with Pelotomaculum thermopropionicum strain SI(T)

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Genome analysis of F. nucleatum sub spp vincentii and its comparison with the genome of F. nucleatum ATCC 25586.

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Genome analysis of the anaerobic thermohalophilic bacterium Halothermothrix orenii

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Genome analysis of the marine bacterium Kiloniella laminariae and first insights into comparative genomics with related Kiloniella species

scientific article published on 16 December 2019

Genome and Transcriptome of Clostridium phytofermentans, Catalyst for the Direct Conversion of Plant Feedstocks to Fuels

scientific article published on 2 June 2015

Genome of Methanocaldococcus (Methanococcus) jannaschii

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Genome of Methanoregula boonei 6A8 reveals adaptations to oligotrophic peatland environments

scientific article published in 2015

Genome sequence and analysis of the oral bacterium Fusobacterium nucleatum strain ATCC 25586

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Genome sequence and analysis of the soil cellulolytic actinomycete Thermobifida fusca YX

scientific article published on 5 January 2007

Genome sequence and description of the anaerobic lignin-degrading bacterium Tolumonas lignolytica sp. nov

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Genome sequence and emended description of Leisingera nanhaiensis strain DSM 24252(T) isolated from marine sediment

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Genome sequence of Bacillus cereus and comparative analysis with Bacillus anthracis

scientific article

Genome sequence of Bradyrhizobium sp. WSM1253; a microsymbiont of Ornithopus compressus from the Greek Island of Sifnos

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Genome sequence of Burkholderia mimosarum strain LMG 23256(T), a Mimosa pigra microsymbiont from Anso, Taiwan

scientific article

Genome sequence of Ensifer arboris strain LMG 14919(T); a microsymbiont of the legume Prosopis chilensis growing in Kosti, Sudan

scientific article

Genome sequence of Ensifer medicae Di28; an effective N2-fixing microsymbiont of Medicago murex and M. polymorpha

scientific article

Genome sequence of Ensifer medicae strain WSM1115; an acid-tolerant Medicago-nodulating microsymbiont from Samothraki, Greece

scientific article

Genome sequence of Ensifer medicae strain WSM1369; an effective microsymbiont of the annual legume Medicago sphaerocarpos

scientific article

Genome sequence of Ensifer meliloti strain WSM1022; a highly effective microsymbiont of the model legume Medicago truncatula A17.

scientific article

Genome sequence of Ensifer sp. TW10; a Tephrosia wallichii (Biyani) microsymbiont native to the Indian Thar Desert

scientific article

Genome sequence of Frateuria aurantia type strain (Kondô 67(T)), a xanthomonade isolated from Lilium auratium Lindl

scientific article published on 02 October 2013

Genome sequence of Microvirga lupini strain LUT6(T), a novel Lupinus alphaproteobacterial microsymbiont from Texas

scientific article

Genome sequence of Phaeobacter caeruleus type strain (DSM 24564(T)), a surface-associated member of the marine Roseobacter clade

scientific article published on 30 July 2013

Genome sequence of Phaeobacter daeponensis type strain (DSM 23529(T)), a facultatively anaerobic bacterium isolated from marine sediment, and emendation of Phaeobacter daeponensis

scientific article published on 03 October 2013

Genome sequence of Phaeobacter inhibens type strain (T5(T)), a secondary metabolite producing representative of the marine Roseobacter clade, and emendation of the species description of Phaeobacter inhibens

scientific article

Genome sequence of Rhizobium leguminosarum bv trifolii strain WSM1689, the microsymbiont of the one flowered clover Trifolium uniflorum

scientific article

Genome sequence of Shimia str. SK013, a representative of the Roseobacter group isolated from marine sediment

scientific article

Genome sequence of Victivallis vadensis ATCC BAA-548, an anaerobic bacterium from the phylum Lentisphaerae, isolated from the human gastrointestinal tract

scientific article

Genome sequence of the Antarctic rhodopsins-containing flavobacterium Gillisia limnaea type strain (R-8282(T)).

scientific article published on October 2012

Genome sequence of the Fleming strain of Micrococcus luteus, a simple free-living actinobacterium

scientific article published in February 2010

Genome sequence of the Lebeckia ambigua-nodulating "Burkholderia sprentiae" strain WSM5005(T.).

scientific article

Genome sequence of the Leisingera aquimarina type strain (DSM 24565(T)), a member of the marine Roseobacter clade rich in extrachromosomal elements

scientific article published on 30 July 2013

Genome sequence of the Listia angolensis microsymbiont Microvirga lotononidis strain WSM3557(T.).

scientific article

Genome sequence of the Litoreibacter arenae type strain (DSM 19593(T)), a member of the Roseobacter clade isolated from sea sand

scientific article published on October 2013

Genome sequence of the Lotus corniculatus microsymbiont Mesorhizobium loti strain R88B

scientific article

Genome sequence of the Lotus spp. microsymbiont Mesorhizobium loti strain NZP2037

scientific article

Genome sequence of the Lotus spp. microsymbiont Mesorhizobium loti strain R7A

scientific article

Genome sequence of the Medicago-nodulating Ensifer meliloti commercial inoculant strain RRI128.

scientific article

Genome sequence of the Ornithopus/Lupinus-nodulating Bradyrhizobium sp. strain WSM471

scientific article

Genome sequence of the South American clover-nodulating Rhizobium leguminosarum bv. trifolii strain WSM597.

scientific article

Genome sequence of the Thermotoga thermarum type strain (LA3(T)) from an African solfataric spring

scientific article

Genome sequence of the Trifolium rueppellianum -nodulating Rhizobium leguminosarum bv. trifolii strain WSM2012.

scientific article

Genome sequence of the Wenxinia marina type strain (DSM 24838(T)), a representative of the Roseobacter group isolated from oilfield sediments

scientific article

Genome sequence of the acid-tolerant Burkholderia sp. strain WSM2230 from Karijini National Park, Australia

scientific article

Genome sequence of the acid-tolerant Burkholderia sp. strain WSM2232 from Karijini National Park, Australia

scientific article

Genome sequence of the chemoheterotrophic soil bacterium Saccharomonospora cyanea type strain (NA-134(T)).

scientific article published on 30 September 2013

Genome sequence of the clover-nodulating Rhizobium leguminosarum bv. trifolii strain SRDI565

scientific article (publication date: 20 December 2013)

Genome sequence of the clover-nodulating Rhizobium leguminosarum bv. trifolii strain SRDI943

scientific article (publication date: 20 December 2013)

Genome sequence of the clover-nodulating Rhizobium leguminosarum bv. trifolii strain TA1

scientific article

Genome sequence of the dark pink pigmented Listia bainesii microsymbiont Methylobacterium sp. WSM2598.

scientific article

Genome sequence of the ethanol-producing Zymomonas mobilis subsp. mobilis lectotype strain ATCC 10988

scientific article

Genome sequence of the ethanol-producing Zymomonas mobilis subsp. pomaceae lectotype strain ATCC 29192.

scientific article

Genome sequence of the exopolysaccharide-producing Salipiger mucosus type strain (DSM 16094(T)), a moderately halophilic member of the Roseobacter clade

scientific article published on 15 March 2014

Genome sequence of the filamentous, gliding Thiothrix nivea neotype strain (JP2(T))

scientific article

Genome sequence of the flexirubin-pigmented soil bacterium Niabella soli type strain (JS13-8(T))

scientific article published on 4 December 2012

Genome sequence of the free-living aerobic spirochete Turneriella parva type strain (H(T)), and emendation of the species Turneriella parva

scientific article published on 25 May 2013

Genome sequence of the homoacetogenic bacterium Holophaga foetida type strain (TMBS4(T)).

scientific article

Genome sequence of the lupin-nodulating Bradyrhizobium sp. strain WSM1417.

scientific article

Genome sequence of the moderately thermophilic halophile Flexistipes sinusarabici strain (MAS10)

scientific article

Genome sequence of the moderately thermophilic sulfur-reducing bacterium Thermanaerovibrio velox type strain (Z-9701(T)) and emended description of the genus Thermanaerovibrio

scientific article published on 02 October 2013

Genome sequence of the moderately thermophilic, amino-acid-degrading and sulfur-reducing bacterium Thermovirga lienii type strain (Cas60314(T)).

scientific article

Genome sequence of the mud-dwelling archaeon Methanoplanus limicola type strain (DSM 2279(T)), reclassification of Methanoplanus petrolearius as Methanolacinia petrolearia and emended descriptions of the genera Methanoplanus and Methanolacinia

scientific article

Genome sequence of the ocean sediment bacterium Saccharomonospora marina type strain (XMU15(T))

scientific article

Genome sequence of the orange-pigmented seawater bacterium Owenweeksia hongkongensis type strain (UST20020801(T)).

scientific article published on October 2012

Genome sequence of the phage-gene rich marine Phaeobacter arcticus type strain DSM 23566(T.).

scientific article published on 30 July 2013

Genome sequence of the phylogenetically isolated spirochete Leptonema illini type strain (3055(T)).

scientific article published on 25 May 2013

Genome sequence of the pink-pigmented marine bacterium Loktanella hongkongensis type strain (UST950701-009P(T)), a representative of the Roseobacter group

scientific article

Genome sequence of the soil bacterium Saccharomonospora azurea type strain (NA-128(T)).

scientific article

Genome sequence of the thermophilic fresh-water bacterium Spirochaeta caldaria type strain (H1(T)), reclassification of Spirochaeta caldaria, Spirochaeta stenostrepta, and Spirochaeta zuelzerae in the genus Treponema as Treponema caldaria comb. nov.

scientific article published on 15 April 2013

Genome sequence of the verrucomicrobium Opitutus terrae PB90-1, an abundant inhabitant of rice paddy soil ecosystems

scientific article

Genome-Based Taxonomic Classification of Bacteroidetes

scientific article (publication date: 2016)

Genome-Based Taxonomic Classification of the Phylum

article published in 2018

Genome-Based Taxonomic Classification of the Phylum Actinobacteria ⬇️

journal article from 'Frontiers in Microbiology' published in 2018

Genome-Scale Data Call for a Taxonomic Rearrangement of Geodermatophilaceae

scientific article published on 19 December 2017

Genome-based classification of micromonosporae with a focus on their biotechnological and ecological potential

scientific article published on 11 January 2018

Genome-based evolutionary history of Pseudomonas spp.

scientific article published on 6 April 2018

Genome-guided analysis allows the identification of novel physiological traits in Trichococcus species

scientific article published on 08 January 2020

Genome-informed Bradyrhizobium taxonomy: where to from here?

scientific article published on 04 April 2019

Genomes OnLine Database (GOLD 1.0): a monitor of complete and ongoing genome projects world-wide

scientific article

Genomes OnLine Database (GOLD) v.6: data updates and feature enhancements

scientific article (publication date: 4 January 2017)

Genomes OnLine Database (GOLD) v.8: overview and updates

scientific article published on 05 November 2020

Genomes OnLine Database (GOLD): a monitor of genome projects world-wide

scientific article

Genomes OnLine database (GOLD) v.7: updates and new features

scientific article published on 01 January 2019

Genomes of ubiquitous marine and hypersaline Hydrogenovibrio , Thiomicrorhabdus and Thiomicrospira spp. encode a diversity of mechanisms to sustain chemolithoautotrophy in heterogeneous environments

article published in 2018

Genomic Analysis of Caldithrix abyssi, the Thermophilic Anaerobic Bacterium of the Novel Bacterial Phylum Calditrichaeota

scientific article published on 20 February 2017

Genomic Encyclopedia of Bacterial and Archaeal Type Strains, Phase III: the genomes of soil and plant-associated and newly described type strains

scientific article

Genomic Encyclopedia of Type Strains, Phase I: The one thousand microbial genomes (KMG-I) project

scientific article

Genomic Methods and Microbiological Technologies for Profiling Novel and Extreme Environments for the Extreme Microbiome Project (XMP)

scientific article

Genomic Standards Consortium Projects

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Genomic characterization of methanomicrobiales reveals three classes of methanogens

scientific article

Genomic composition and dynamics among Methanomicrobiales predict adaptation to contrasting environments

scientific article published on 23 August 2016

Genomic encyclopedia of bacteria and archaea: sequencing a myriad of type strains

scientific article published in August 2014

Genomic standards consortium projects

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Genomics of aerobic cellulose utilization systems in actinobacteria

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Genomics. Genome project standards in a new era of sequencing

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Giant virus diversity and host interactions through global metagenomics

scientific article published on 22 January 2020

Giant viruses with an expanded complement of translation system components

scientific article (publication date: 6 April 2017)

Global Genetic Cartography of Urban Metagenomes and Anti-Microbial Resistance

scientific article published on 06 August 2019

Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springs

scientific article published on 27 January 2016

Habitat-Lite: a GSC case study based on free text terms for environmental metadata

scientific article published on June 2008

Heterologous expression and characterization of two 1-hydroxy-2-naphthoic acid dioxygenases from Arthrobacter phenanthrenivorans

scientific article

High level of intergenera gene exchange shapes the evolution of haloarchaea in an isolated Antarctic lake

scientific article published on 30 September 2013

High quality draft genome of Nakamurella lactea type strain, a rock actinobacterium, and emended description of Nakamurella lactea

scientific article published on 06 January 2017

High quality draft genome sequence and analysis of Pontibacter roseus type strain SRC-1(T) (DSM 17521(T)) isolated from muddy waters of a drainage system in Chandigarh, India

scientific article published on 9 February 2015

High quality draft genome sequence of Bacteroides barnesiae type strain BL2(T) (DSM 18169(T)) from chicken caecum

scientific article

High quality draft genome sequence of Brachymonas chironomi AIMA4(T) (DSM 19884(T)) isolated from a Chironomus sp. egg mass

scientific article published on 27 May 2015

High quality draft genome sequence of Corynebacterium ulceribovis type strain IMMIB-L1395(T) (DSM 45146(T))

scientific article

High quality draft genome sequence of Flavobacterium rivuli type strain WB 3.3-2(T) (DSM 21788(T)), a valuable source of polysaccharide decomposing enzymes

scientific article

High quality draft genome sequence of Leucobacter chironomi strain MM2LB(T) (DSM 19883(T)) isolated from a Chironomus sp. egg mass

scientific article published on 8 May 2015

High quality draft genome sequence of Meganema perideroedes str. Gr1(T) and a proposal for its reclassification to the family Meganemaceae fam. nov

scientific article published on 27 February 2015

High quality draft genome sequence of Olivibacter sitiensis type strain (AW-6(T)), a diphenol degrader with genes involved in the catechol pathway

scientific article

High quality draft genome sequence of the slightly halophilic bacterium Halomonas zhanjiangensis type strain JSM 078169(T) (DSM 21076(T)) from a sea urchin in southern China

scientific article

High quality draft genome sequences of Pseudomonas fulva DSM 17717(T), Pseudomonas parafulva DSM 17004(T) and Pseudomonas cremoricolorata DSM 17059(T) type strains

scientific article

High quality permanent draft genome sequence of Chryseobacterium bovis DSM 19482T, isolated from raw cow milk

scientific article

High quality permanent draft genome sequence of Phaseolibacter flectens ATCC 12775(T), a plant pathogen of French bean pods

scientific article

High-Quality Draft Genome Sequence of Desulfovibrio carbinoliphilus FW-101-2B, an Organic Acid-Oxidizing Sulfate-Reducing Bacterium Isolated from Uranium(VI)-Contaminated Groundwater

scientific article

High-Quality Draft Genome Sequence of Kallotenue papyrolyticum JKG1T Reveals Broad Heterotrophic Capacity Focused on Carbohydrate and Amino Acid Metabolism

scientific article

High-Quality Draft Genome Sequence of Thermocrinis jamiesonii GBS1T Isolated from Great Boiling Spring, Nevada

scientific article published on 20 October 2016

High-Quality Draft Genome Sequences of Eight Bacteria Isolated from Fungus Gardens Grown by Trachymyrmex septentrionalis Ants

scientific article published on 19 July 2018

High-Quality Draft Genomes from Thermus caliditerrae YIM 77777 and T. tengchongensis YIM 77401, Isolates from Tengchong, China

scientific article published on 28 April 2016

High-Quality draft genome sequence of the Lotus spp. microsymbiont Mesorhizobium loti strain CJ3Sym

scientific article

High-quality draft genome sequence of Ensifer meliloti Mlalz-1, a microsymbiont of Medicago laciniata (L.) miller collected in Lanzarote, Canary Islands, Spain

scientific article published on 25 September 2017

High-quality draft genome sequence of Flavobacterium suncheonense GH29-5(T) (DSM 17707(T)) isolated from greenhouse soil in South Korea, and emended description of Flavobacterium suncheonense GH29-5(T)

scientific article published on 16 June 2016

High-quality draft genome sequence of Gracilimonas tropica CL-CB462(T) (DSM 19535(T)), isolated from a Synechococcus culture

scientific article

High-quality draft genome sequence of Rhizobium mesoamericanum strain STM6155, a Mimosa pudica microsymbiont from New Caledonia.

scientific article

High-quality draft genome sequence of Sedimenticola selenatireducens strain AK4OH1T, a gammaproteobacterium isolated from estuarine sediment

scientific article published on 08 September 2016

High-quality draft genome sequence of the Thermus amyloliquefaciens type strain YIM 77409(T) with an incomplete denitrification pathway

scientific article published on 27 February 2016

High-quality draft genome sequences of Pseudomonas monteilii DSM 14164T, Pseudomonas mosselii DSM 17497T, Pseudomonas plecoglossicida DSM 15088T, Pseudomonas taiwanensis DSM 21245T and Pseudomonas vranovensis DSM 16006T: taxonomic considerations

scientific article published on 29 October 2019

High-quality genome sequence of the radioresistant bacterium Deinococcus ficus KS 0460.

scientific article published on 28 July 2017

High-quality permanent draft genome sequence of Bradyrhizobium sp. Ai1a-2; a microsymbiont of Andira inermis discovered in Costa Rica

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High-quality permanent draft genome sequence of Bradyrhizobium sp. Th.b2, a microsymbiont of Amphicarpaea bracteata collected in Johnson City, New York

scientific article published on 16 May 2015

High-quality permanent draft genome sequence of Bradyrhizobium sp. Tv2a.2, a microsymbiont of Tachigali versicolor discovered in Barro Colorado Island of Panama

scientific article published on 17 May 2015

High-quality permanent draft genome sequence of Bradyrhizobium sp. strain WSM1743 - an effective microsymbiont of an Indigofera sp. growing in Australia

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High-quality permanent draft genome sequence of Ensifer medicae strain WSM244, a microsymbiont isolated from Medicago polymorpha growing in alkaline soil

scientific article

High-quality permanent draft genome sequence of Ensifer meliloti strain 4H41, an effective salt- and drought-tolerant microsymbiont of Phaseolus vulgaris

scientific article

High-quality permanent draft genome sequence of Ensifer sp. PC2, isolated from a nitrogen-fixing root nodule of the legume tree (Khejri) native to the Thar Desert of India

scientific article published on 23 June 2016

High-quality permanent draft genome sequence of Rhizobium leguminosarum bv. viciae strain GB30; an effective microsymbiont of Pisum sativum growing in Poland

scientific article published on 16 July 2015

High-quality permanent draft genome sequence of Rhizobium sullae strain WSM1592; a Hedysarum coronarium microsymbiont from Sassari, Italy

scientific article

High-quality permanent draft genome sequence of the Bradyrhizobium elkanii type strain USDA 76T, isolated from Glycine max (L.) Merr.

scientific article

High-quality permanent draft genome sequence of the Lebeckia - nodulating Burkholderia dilworthii strain WSM3556(T)

scientific article

High-quality permanent draft genome sequence of the Lebeckia ambigua-nodulating Burkholderia sp. strain WSM4176.

scientific article

High-quality permanent draft genome sequence of the Mimosa asperata - nodulating Cupriavidus sp. strain AMP6.

scientific article

High-quality permanent draft genome sequence of the Parapiptadenia rigida-nodulating Burkholderia sp. strain UYPR1.413.

scientific article published on 4 June 2015

High-quality permanent draft genome sequence of the Parapiptadenia rigida-nodulating Cupriavidus sp. strain UYPR2.512.

scientific article published on 11 April 2015

High-quality permanent draft genome sequence of the extremely osmotolerant diphenol degrading bacterium Halotalea alkalilenta AW-7(T), and emended description of the genus Halotalea

scientific article

High-quality-draft genome sequence of the fermenting bacterium Anaerobium acetethylicum type strain GluBS11T (DSM 29698).

scientific article published on 20 February 2017

High-quality-draft genome sequence of the yellow-pigmented flavobacterium Joostella marina type strain (En5(T)).

scientific article published on 15 April 2013

HipMCL: a high-performance parallel implementation of the Markov clustering algorithm for large-scale networks

scientific article published on 5 January 2018

How much do rRNA gene surveys underestimate extant bacterial diversity?

scientific article published on 5 January 2018

Hymenobacter artigasi sp. nov., isolated from air sampling in maritime Antarctica

scientific article published on 03 August 2020

IMG 4 version of the integrated microbial genomes comparative analysis system

scientific article

IMG ER: A System for Microbial Genome Annotation Expert Review and Curation

IMG ER: a system for microbial genome annotation expert review and curation

scientific article (publication date: September 2009)

IMG-ABC v.5.0: an update to the IMG/Atlas of Biosynthetic Gene Clusters Knowledgebase

scientific article published on 01 January 2020

IMG-ABC: A Knowledge Base To Fuel Discovery of Biosynthetic Gene Clusters and Novel Secondary Metabolites

scientific article published on 14 July 2015

IMG-ABC: new features for bacterial secondary metabolism analysis and targeted biosynthetic gene cluster discovery in thousands of microbial genomes

scientific article

IMG/M 4 version of the integrated metagenome comparative analysis system

scientific article published on 16 October 2013

IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes

scientific article published on 01 January 2019

IMG/M-HMP: a metagenome comparative analysis system for the Human Microbiome Project

scientific article

IMG/M: a data management and analysis system for metagenomes

scientific article

IMG/M: integrated genome and metagenome comparative data analysis system

scientific article

IMG/M: the integrated metagenome data management and comparative analysis system

scientific article

IMG/VR v.2.0: an integrated data management and analysis system for cultivated and environmental viral genomes

scientific article published on 01 January 2019

IMG/VR v3: an integrated ecological and evolutionary framework for interrogating genomes of uncultivated viruses

scientific article published on 02 November 2020

IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses

scientific article published on 30 October 2016

IMG: the Integrated Microbial Genomes database and comparative analysis system

scientific article

Identification of a haloalkaliphilic and thermostable cellulase with improved ionic liquid tolerance

Identification of protein-tyrosine phosphatases in Archaea

scientific article published on May 1999

Improved Draft Genome Sequence of Microbacterium sp. Strain LKL04, a Bacterial Endophyte Associated with Switchgrass Plants

scientific article published on 07 November 2019

Improved Draft Genome Sequence of Pseudomonas poae A2-S9, a Strain with Plant Growth-Promoting Activity

article

Improved Draft Genome Sequence of sp. Strain YF23, Which Has Plant Growth-Promoting Activity

article

Improving microbial genome annotations in an integrated database context

scientific article published in 2013

Individual genome assembly from complex community short-read metagenomic datasets

scientific article published on 27 October 2011

Influence of the polar light cycle on seasonal dynamics of an Antarctic lake microbial community

scientific article published on 09 August 2020

Insights into the dynamics between viruses and their hosts in a hot spring microbial mat

scientific article published on 13 July 2020

Insights into the phylogeny and coding potential of microbial dark matter

scientific article

Integration of phenotypic metadata and protein similarity in Archaea using a spectral bipartitioning approach

scientific article published on 17 February 2009

Investigation of intracellular signals generated by gamma-interferon and IL-4 leading to the induction of class II antigen expression

scientific article published on January 1993

KOW: a novel motif linking a bacterial transcription factor with ribosomal proteins

scientific article published in November 1996

Large-Scale Analyses of Human Microbiomes Reveal Thousands of Small, Novel Genes

scientific article published on 08 August 2019

Large-scale contamination of microbial isolate genomes by Illumina PhiX control

scientific article published on 30 March 2015

Laying the foundation for a Genomic Rosetta Stone: creating information hubs through the use of consensus identifiers

scientific article published on June 2008

MIxS-HCR: a MIxS extension defining a minimal information standard for sequence data from environments pertaining to hydrocarbon resources.

scientific article published on 12 October 2016

Marcus Leonardo Boyd

scientific article published on 26 May 2021

Mechanisms of Specificity in mRNA Degradation: Autoregulation and Cognate Interactions

scientific article published on 01 August 1993

Meeting Report from the Genomic Standards Consortium (GSC) Workshop 10

scientific article (publication date: 25 December 2010)

Meeting Report from the Genomic Standards Consortium (GSC) Workshop 8

scientific article (publication date: 20 August 2010)

Meeting Report from the Genomic Standards Consortium (GSC) Workshop 9

scientific article (publication date: 4 December 2010)

Meeting Report from the Genomic Standards Consortium (GSC) Workshops 6 and 7

scientific article (publication date: 20 July 2009)

Meeting Report: "Metagenomics, Metadata and Meta-analysis" (M3) Workshop at the Pacific Symposium on Biocomputing 2010.

scientific article

Meeting Report: Towards a Critical Assessment of Functional Annotation Experiment (CAFAE) for bacterial genome annotation

scientific article

Meeting report of the RNA Ontology Consortium January 8-9, 2011.

scientific article

Meeting report: GSC M5 roundtable at the 13th International Society for Microbial Ecology meeting in Seattle, WA, USA August 22-27, 2010

scientific article (publication date: 15 December 2010)

Meeting report: the fifth Genomic Standards Consortium (GSC) workshop.

scientific article published in June 2008

Meeting report: the fourth Genomic Standards Consortium (GSC) workshop.

scientific article published in June 2008

Meeting report: the terabase metagenomics workshop and the vision of an Earth microbiome project

scientific article

Metabolic dependencies govern microbial syntrophies during methanogenesis in an anaerobic digestion ecosystem

scientific article published on 15 February 2020

Metagenomes and metatranscriptomes from boreal potential and actual acid sulfate soil materials

scientific article published on 16 October 2019

Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities

scientific article

Metagenomic insights into the taxonomy, function, and dysbiosis of prokaryotic communities in octocorals

scientific article published on 25 March 2021

Metagenomic investigation of the geologically unique Hellenic Volcanic Arc reveals a distinctive ecosystem with unexpected physiology

scientific article published on 21 October 2015

Metagenomics uncovers gaps in amplicon-based detection of microbial diversity

scientific article published in February 2016

Metatranscriptomic Sequencing of a Cyanobacterial Soil-Surface Consortium with and without a Diverse Underlying Soil Microbiome

scientific article published on 02 January 2020

Microbial co-habitation and lateral gene transfer: what transposases can tell us.

scientific article

Microbial ecology of an Antarctic hypersaline lake: genomic assessment of ecophysiology among dominant haloarchaea

scientific article

Microbial ecology of an Antarctic hypersaline lake: genomic assessment of ecophysiology among dominant haloarchaea.

scientific article

Microbial metagenomes and metatranscriptomes during a coastal phytoplankton bloom

scientific article published on 22 July 2019

Microbial species delineation using whole genome sequences

scientific article

Microbiome Data Science: Understanding Our Microbial Planet

scientific article

Microbiomes of Velloziaceae from phosphorus-impoverished soils of the campos rupestres, a biodiversity hotspot

scientific article published on 31 July 2019

Minimum Information about a Biosynthetic Gene cluster.

scientific article published on August 2015

Minimum Information about an Uncultivated Virus Genome (MIUViG)

scientific article published on 17 December 2018

Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications

scientific article

Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.

scientific article

Molecular Dialogues between Early Divergent Fungi and Bacteria in an Antagonism versus a Mutualism

scientific article published on 08 September 2020

Multiple syntrophic interactions in a terephthalate-degrading methanogenic consortium

scientific article

Murine colitis reveals a disease-associated bacteriophage community

article

NAP: The Network Analysis Profiler, a web tool for easier topological analysis and comparison of medium-scale biological networks

scientific article

Near-Complete Genome Sequence of Thalassospira sp. Strain KO164 Isolated from a Lignin-Enriched Marine Sediment Microcosm

scientific article

New insights from uncultivated genomes of the global human gut microbiome

scientific article published on 13 March 2019

Non-contiguous finished genome sequence and contextual data of the filamentous soil bacterium Ktedonobacter racemifer type strain (SOSP1-21).

scientific article

Non-contiguous finished genome sequence of Aminomonas paucivorans type strain (GLU-3).

scientific article

Non-contiguous finished genome sequence of Bacteroides coprosuis type strain (PC139). ⬇️

scientific article

Non-contiguous finished genome sequence of plant-growth promoting Serratia proteamaculans S4

scientific article published on 30 July 2013

Non-contiguous finished genome sequence of the opportunistic oral pathogen Prevotella multisaccharivorax type strain (PPPA20).

scientific article published on 23 September 2011

Nontargeted virus sequence discovery pipeline and virus clustering for metagenomic data

scientific article

Novel heavy metal resistance gene clusters are present in the genome of Cupriavidus neocaledonicus STM 6070, a new species of Mimosa pudica microsymbiont isolated from heavy-metal-rich mining site soil

scientific article published on 06 March 2020

Novel insights into the diversity of catabolic metabolism from ten haloarchaeal genomes

scientific article

Novel protein families in archaean genomes

scientific article

Nucleic acid-binding metabolic enzymes: living fossils of stereochemical interactions?

scientific article published on June 1995

On the Origin of Reverse Transcriptase-Using CRISPR-Cas Systems and Their Hyperdiverse, Enigmatic Spacer Repertoires

scientific article

On the evolution of arginases and related enzymes

scientific article published on July 1994

One Complete and Seven Draft Genome Sequences of Subdivision 1 and 3 Acidobacteria Isolated from Soil

scientific article published on 30 January 2020

Paenibacillus aquistagni sp. nov., isolated from an artificial lake accumulating industrial wastewater

scientific article

Parallel origins of the nucleosome core and eukaryotic transcription from Archaea

scientific article published on February 1996

Partial genome sequence of Thioalkalivibrio thiocyanodenitrificans ARhD 1(T), a chemolithoautotrophic haloalkaliphilic sulfur-oxidizing bacterium capable of complete denitrification

scientific article published on 26 October 2015

Partial genome sequence of the haloalkaliphilic soda lake bacterium Thioalkalivibrio thiocyanoxidans ARh 2(T).

scientific article published on 26 October 2015

Permanent Draft Genome Sequence of Desulfurococcus amylolyticus Strain Z-533T, a Peptide and Starch Degrader Isolated from Thermal Springs in the Kamchatka Peninsula and Kunashir Island, Russia

scientific article

Permanent Draft Genome Sequence of Nocardia sp. BMG111209, an Actinobacterium Isolated from Nodules of Casuarina glauca

scientific article published on 04 August 2016

Permanent Improved High-Quality Draft Genome Sequence of Nocardia casuarinae Strain BMG51109, an Endophyte of Actinorhizal Root Nodules of Casuarina glauca

scientific article published on 04 August 2016

Permanent draft genome of Thermithiobaclillus tepidarius DSM 3134T, a moderately thermophilic, obligately chemolithoautotrophic member of the Acidithiobacillia

scientific article published on 26 September 2016

Permanent draft genome of Thiobacillus thioparus DSM 505T, an obligately chemolithoautotrophic member of the Betaproteobacteria

scientific article published on 19 January 2017

Permanent draft genome sequence of Desulfurococcus mobilis type strain DSM 2161, a thermoacidophilic sulfur-reducing crenarchaeon isolated from acidic hot springs of Hveravellir, Iceland

scientific article

Permanent draft genome sequence of Dethiosulfovibrio peptidovorans type strain (SEBR 4207)

scientific article

Permanent draft genome sequence of the gliding predator Saprospira grandis strain Sa g1 (= HR1).

scientific article

Permanent draft genome sequences of the symbiotic nitrogen fixing Ensifer meliloti strains BO21CC and AK58

scientific article

Prepublication data sharing

scientific article

ProDeGe: a computational protocol for fully automated decontamination of genomes

scientific article published on 9 June 2015

Programmed DNA destruction by miniature CRISPR-Cas14 enzymes

scientific article published in Science

Prokaryotic community profiles at different operational stages of a Greek solar saltern

scientific article published on 14 October 2008

Protein structure determination using metagenome sequence data

scientific article

Publisher Correction: A genomic catalog of Earth's microbiomes

scientific article published on 18 November 2020

RNA-Dependent Cysteine Biosynthesis in Bacteria and Archaea.

scientific article

Reclassification of a Polynucleobacter cosmopolitanus strain isolated from tropical Lake Victoria as Polynucleobacter victoriensis sp. nov.

scientific article

Recombination should not be an afterthought

scientific article published on 21 September 2020

Reverse Interpretation: A Hypothetical Selection Mechanism for Adaptive Mutagenesis Based on Autoregulated mRNA Stability

SOP for pathway inference in Integrated Microbial Genomes (IMG)

scientific article published on 22 December 2011

Sequencing of multiple clostridial genomes related to biomass conversion and biofuel production

scientific article

Single-cell genomics of co-sorted Nanoarchaeota suggests novel putative host associations and diversification of proteins involved in symbiosis

scientific article published on 17 September 2018

Standards in genomic sciences

article published in 2009

Stop codon reassignments in the wild

scientific article

Structural and functional features of the intracellular amino terminus of DEG/ENaC ion channels.

scientific article published in March 2001

Structural characterization of a soil viral auxiliary metabolic gene product – a functional chitosanase

scientific article published in 2022

Structure determination of the HgcAB complex using metagenome sequence data: insights into microbial mercury methylation

scientific article published on 19 June 2020

Structure, function and diversity of the healthy human microbiome

scientific article

Succession in the petroleum reservoir microbiome through an oil field production lifecycle

scientific article published on 19 May 2017

Sulfate-Reducing Bacteria That Produce Exopolymers Thrive in the Calcifying Zone of a Hypersaline Cyanobacterial Mat

article

Supporting community annotation and user collaboration in the integrated microbial genomes (IMG) system

scientific article

Symbiosis insights through metagenomic analysis of a microbial consortium

scientific article

Ten years of maintaining and expanding a microbial genome and metagenome analysis system

scientific article published on 2 September 2015

Tetratrico-peptide-repeat proteins in the archaeon Methanococcus jannaschii

scientific article

The DOE-JGI Standard Operating Procedure for the Annotations of Microbial Genomes

scientific article

The ERGO genome analysis and discovery system

scientific article

The Earth Microbiome Project: Meeting report of the "1 EMP meeting on sample selection and acquisition" at Argonne National Laboratory October 6 2010.

scientific article

The Earth Microbiome Project: The Meeting Report for the 1st International Earth Microbiome Project Conference, Shenzhen, China, June 13th-15th 2011.

scientific article published on 22 November 2011

The Genome Sequence of the Novel Rhizobial SpeciesMicrovirga lotononidisStrain WSM3557T

The Genome of the Acid Soil-Adapted Strain <i>Rhizobium favelukesii</i> OR191 Encodes Determinants for Effective Symbiotic Interaction With Both an Inverted Repeat Lacking Clade and a Phaseoloid Legume Host

scientific article published on 13 April 2022

The Genomes On Line Database (GOLD) in 2007: status of genomic and metagenomic projects and their associated metadata

scientific article (publication date: 2008)

The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata

scientific article (publication date: 2010)

The Genomes On Line Database (GOLD) v.2: a monitor of genome projects worldwide

scientific article

The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata

scientific article

The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification.

scientific article

The Genomic Standards Consortium

scientific article (publication date: June 2011)

The IMG/M data management and analysis system v.6.0: new tools and advanced capabilities

scientific article published on 29 October 2020

The Integrated Microbial Genomes (IMG) System: An Expanding Comparative Analysis Resource

The Joint Genome Institute Offers Resources Beyond a Core Facility

The Korarchaeota: Archaeal orphans representing an ancestral lineage of life

The M5nr: a novel non-redundant database containing protein sequences and annotations from multiple sources and associated tools

scientific article

The Metadata Coverage Index (MCI): A standardized metric for quantifying database metadata richness

scientific article (publication date: 30 July 2012)

The Microbial Earth Project

The Rhodobacter capsulatus genome

article

The SPFH domain: implicated in regulating targeted protein turnover in stomatins and other membrane-associated proteins

scientific article published in November 1999

The Wolbachia genome of Brugia malayi: endosymbiont evolution within a human pathogenic nematode

scientific article

The biogeographic differentiation of algal microbiomes in the upper ocean from pole to pole

scientific article published in 2021

The complete genome sequence of Clostridium indolis DSM 755(T.).

scientific article

The complete genome sequence of Staphylothermus marinus reveals differences in sulfur metabolism among heterotrophic Crenarchaeota

scientific article

The complete genome sequence of Thermoproteus tenax: a physiologically versatile member of the Crenarchaeota

scientific article published in 2011

The complete genome sequence of the algal symbiont Dinoroseobacter shibae: a hitchhiker's guide to life in the sea.

scientific article published on 10 September 2009

The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus

scientific article

The complete multipartite genome sequence of Cupriavidus necator JMP134, a versatile pollutant degrader

scientific article

The core histone fold: Limits to functional versatility

scientific article published on 01 December 1996

The emergence of major cellular processes in evolution

scientific article

The eubacterial transcriptional activator Lrp is present in the archaeon Pyrococcus furiosus

scientific article published on April 1995

The evolution of host specialization in the vertebrate gut symbiont Lactobacillus reuteri

scientific article

The fast changing landscape of sequencing technologies and their impact on microbial genome assemblies and annotation

scientific article

The genome of the obligately intracellular bacterium Ehrlichia canis reveals themes of complex membrane structure and immune evasion strategies

scientific article

The genome sequence of Methanohalophilus mahii SLP(T) reveals differences in the energy metabolism among members of the Methanosarcinaceae inhabiting freshwater and saline environments

scientific article

The genome sequence of the facultative intracellular pathogen Brucella melitensis

scientific article

The genomic basis of trophic strategy in marine bacteria

scholarly article

The integrated microbial genomes (IMG) system

scientific article

The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions

scientific article

The integrated microbial genomes system: an expanding comparative analysis resource

scientific article

The minimum information about a genome sequence (MIGS) specification

scientific article

The positive role of the ecological community in the genomic revolution

scientific article published on 12 April 2007

The role of IL-4 in human myeloid leukemia: stimulation of RNA synthesis and transduction of differentiation signals through an IL-4 receptor leads to functional and HLA positive HL-60 cells

scientific article

The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4)

scientific article published on 24 February 2016

The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4).

scientific article

The “Minimum Information about an ENvironmental Sequence” (MIENS) specification

The “Minimum Information about an ENvironmental Sequence” (MIENS) specification

Thermus oshimai JL-2 and T. thermophilus JL-18 genome analysis illuminates pathways for carbon, nitrogen, and sulfur cycling

scientific article published on 25 February 2013

ThiD-TenA: a gene pair fusion in eukaryotes

scientific article published on December 1997

Thousands of small, novel genes predicted in global phage genomes

scientific article published in 2022

Toward a standard in structural genome annotation for prokaryotes

scientific article

Toward a standards-compliant genomic and metagenomic publication record

scientific article

Toward an online repository of Standard Operating Procedures (SOPs) for (meta)genomic annotation

scientific article

Toward unrestricted use of public genomic data:

scientific article

Towards a balanced view of the bacterial tree of life

scientific article published on 17 October 2017

Transcription in Archaea

article published in the Proceedings of the National Academy of Sciences of the United States of America

Transfer RNAs with novel cloverleaf structures

scientific article

Trichodesmium genome maintains abundant, widespread noncoding DNA in situ, despite oligotrophic lifestyle

scientific article

Uncovering Earth’s virome

scientific article (publication date: 17 August 2016)

Universal Protein Families and the Functional Content of the Last Universal Common Ancestor

scientific article published on 01 October 1999

Universally conserved translation initiation factors

scientific article published on January 1998

Use of simulated data sets to evaluate the fidelity of metagenomic processing methods

scientific article

Using IMG: Comparative Analysis with the Integrated MicrobialGenomes System

WIT: integrated system for high-throughput genome sequence analysis and metabolic reconstruction

scientific article

Whole Genome Sequencing of Thermus oshimai JL-2 and Thermus thermophilus JL-18, Incomplete Denitrifiers from the United States Great Basin

scientific article published on 24 January 2013

Whole-genome comparative analysis of three phytopathogenic Xylella fastidiosa strains

scientific article

Whole-genome sequence annotation: 'Going wrong with confidence'.

scientific article published in May 1999

[Facile Recoding of Selenocysteine in Nature].

scientific article published on 15 March 2016

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