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List of works by Filip Ginter

All-paths graph kernel for protein-protein interaction extraction with evaluation of cross-corpus learning

scientific article

An expanded evaluation of protein function prediction methods shows an improvement in accuracy ⬇️

scientific article

Analysis of Link Grammar on Biomedical Dependency Corpus Targeted at Protein-Protein Interactions ⬇️

scientific article published in 2004

Application of the EVEX resource to event extraction and network construction: Shared Task entry and result analysis

scientific article published on 30 October 2015

Assisting nurses in care documentation: from automated sentence classification to coherent document structures with subject headings

scientific article published on 01 September 2020

BioInfer: a corpus for information extraction in the biomedical domain

scientific article published on 9 February 2007

Building the essential resources for Finnish: the Turku Dependency Treebank

Care episode retrieval: distributional semantic models for information retrieval in the clinical domain

scientific article

Cell line name recognition in support of the identification of synthetic lethality in cancer from text

scientific article published on October 2015

Combining hidden Markov models and latent semantic analysis for topic segmentation and labeling: method and clinical application

scientific article published on 26 March 2009

Comparative analysis of five protein-protein interaction corpora

scientific article

Complex event extraction at PubMed scale

scientific article

Contextual weighting for Support Vector Machines in literature mining: an application to gene versus protein name disambiguation

scientific article

Data and systems for medication-related text classification and concept normalization from Twitter: insights from the Social Media Mining for Health (SMM4H)-2017 shared task

article

Dependency parsing of biomedical text with BERT

scientific article published on 29 December 2020

Evaluation of two dependency parsers on biomedical corpus targeted at protein-protein interactions.

scientific article published on 11 August 2005

Event extraction on PubMed scale.

scientific article published on 6 October 2010

Exploring Biomolecular Literature with EVEX: Connecting Genes through Events, Homology, and Indirect Associations

scientific article

Filtering large-scale event collections using a combination of supervised and unsupervised learning for event trigger classification

scientific article

Finding novel relationships with integrated gene-gene association network analysis of Synechocystis sp. PCC 6803 using species-independent text-mining.

scientific article published on 23 May 2018

Improving Layman Readability of Clinical Narratives with Unsupervised Synonym Replacement

Large-scale event extraction from literature with multi-level gene normalization

scientific article

Multi-CrossRE A Multi-Lingual Multi-Domain Dataset for Relation Extraction ⬇️

Potent pairing: ensemble of long short-term memory networks and support vector machine for chemical-protein relation extraction

Reconsidering Authorship in the Ciceronian Corpus through Computational Authorship Attribution

Sharing annotations better: RESTful Open Annotation ⬇️

scientific article (publication date: 2015)

Silver Syntax Pre-training for Cross-Domain Relation Extraction ⬇️

Statistical parsing of varieties of clinical Finnish

scientific article published on 5 March 2014

Supporting the use of standardized nursing terminologies with automatic subject heading prediction: a comparison of sentence-level text classification methods

scientific article published on 01 January 2020

Syntactic analyses and named entity recognition for PubMed and PubMed Central — up-to-the-minute

The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens

scientific article published on 19 November 2019

The Finnish Proposition Bank

The reuse of texts in Finnish newspapers and journals, 1771–1920: A digital humanities perspective

scientific article

Towards Automatic Short Answer Assessment for Finnish as a Paraphrase Retrieval Task

Towards automated processing of clinical Finnish: sublanguage analysis and a rule-based parser

scientific article published on 18 March 2009

Towards diverse and contextually anchored paraphrase modeling: A dataset and baselines for Finnish

U-Compare bio-event meta-service: compatible BioNLP event extraction services

scientific article (publication date: 18 December 2011)

Universal Dependencies v2: An Evergrowing Multilingual Treebank Collection ⬇️

Universal Lemmatizer: A sequence-to-sequence model for lemmatizing Universal Dependencies treebanks

scientific article published in 2020

University of Turku in the BioNLP'11 Shared Task ⬇️

scientific article published on June 26, 2012

Wide-scope biomedical named entity recognition and normalization with CRFs, fuzzy matching and character level modeling

WikiBERT models: deep transfer learning for many languages ⬇️

scientific article

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