List of works - Bunzo Mikami

A novel structural fold in polysaccharide lyases: Bacillus subtilis family 11 rhamnogalacturonan lyase YesW with an eight-bladed beta-propeller

scientific article

A structural factor responsible for substrate recognition by Bacillus sp. GL1 xanthan lyase that acts specifically on pyruvated side chains of xanthan

scientific article

Atomic structure of recombinant thaumatin II reveals flexible conformations in two residues critical for sweetness and three consecutive glycine residues

scientific article

Atomic structure of the sweet-tasting protein thaumatin I at pH 8.0 reveals the large disulfide-rich region in domain II to be sensitive to a pH change

scientific article

Change in the crystal packing of soybean beta-amylase mutants substituted at a few surface amino acid residues

scientific article

Characterization and crystallography of recombinant 7S globulins of Adzuki bean and structure-function relationships with 7S globulins of various crops

scientific article

Conservation and divergence on plant seed 11S globulins based on crystal structures

scientific article

Crystal Structure of Exotype Alginate Lyase Atu3025 from Agrobacterium tumefaciens

scientific article

Crystal Structure of Family 14 Polysaccharide Lyase with pH-dependent Modes of Action

scientific article

Crystal Structure of Plant Ferritin Reveals a Novel Metal Binding Site That Functions as a Transit Site for Metal Transfer in Ferritin

scientific article

Crystal Structure of a Bacterial Unsaturated Glucuronyl Hydrolase with Specificity for Heparin

scientific article

Crystal Structures of Protein Glutaminase and Its Pro Forms Converted into Enzyme-Substrate Complex ⬇️

scientific article published on September 16, 2011

Crystal structure of 5-formyl-3-hydroxy-2-methylpyridine 4-carboxylic acid 5-dehydrogenase, an NAD⁺-dependent dismutase from Mesorhizobium loti

scientific article

Crystal structure of AlgQ2, a macromolecule (alginate)-binding protein of Sphingomonas sp. A1 at 2.0A resolution

scientific article

Crystal structure of AlgQ2, a macromolecule (alginate)-binding protein of Sphingomonas sp. A1, complexed with an alginate tetrasaccharide at 1.6-A resolution

scientific article

Crystal structure of Bacillus sp. GL1 xanthan lyase, which acts on the side chains of xanthan

scientific article

Crystal structure of Pedobacter heparinus heparin lyase Hep III with the active site in a deep cleft

scientific article

Crystal structure of UDP-N-acetylglucosamine enolpyruvyl transferase from Haemophilus influenzae in complex with UDP-N-acetylglucosamine and fosfomycin

scientific article

Crystal structure of YihS in complex with D-mannose: structural annotation of Escherichia coli and Salmonella enterica yihS-encoded proteins to an aldose-ketose isomerase

scientific article

Crystal structure of a major seed storage protein, 11S proglobulin, from Amaranthus hypochondriacus: insight into its physico-chemical properties

scientific article

Crystal structure of a novel bacterial cell-surface flagellin binding to a polysaccharide

scientific article

Crystal structure of bacterial cell-surface alginate-binding protein with an M75 peptidase motif ⬇️

scientific article published on January 14, 2011

Crystal structure of class III chitinase from pomegranate provides the insight into its metal storage capacity

scientific article

Crystal structure of cold-active alkaline phosphatase from the psychrophile Shewanella sp

scientific article

Crystal structure of glycoside hydrolase family 78 alpha-L-Rhamnosidase from Bacillus sp. GL1

scientific article

Crystal structure of phosphopantetheine adenylyltransferase from Enterococcus faecalis in the ligand-unbound state and in complex with ATP and pantetheine

scientific article

Crystal structure of pyridoxamine-pyruvate aminotransferase from Mesorhizobium loti MAFF303099

scientific article

Crystal structure of pyridoxine 4-oxidase from Mesorhizobium loti

scientific article

Crystal structure of soybean 11S globulin: Glycinin A3B4 homohexamer

scientific article (publication date: 10 June 2003)

Crystal structure of the glycosidase family 73 peptidoglycan hydrolase FlgJ

scientific article

Crystal structure of the major peanut allergen Ara h 1 ⬇️

scientific article published on September 7, 2011

Crystal structure of the sweet-tasting protein thaumatin II at 1.27Å ⬇️

scientific article published on June 6, 2011

Formate oxidase, an enzyme of the glucose-methanol-choline oxidoreductase family, has a His-Arg pair and 8-formyl-FAD at the catalytic site

scientific article

Heterosubunit Composition and Crystal Structures of a Novel Bacterial M16B Metallopeptidase ⬇️

scientific article published on January 22, 2011

High-resolution structure of the recombinant sweet-tasting protein thaumatin I ⬇️

scientific article published on May 24, 2011

Induced-fit motion of a lid loop involved in catalysis in alginate lyase A1-III

scientific article

Loop-inserted and thermostabilized structure of P1-P1' cleaved ovalbumin mutant R339T

scientific article

Metabolic fate of unsaturated glucuronic/iduronic acids from glycosaminoglycans: molecular identification and structure determination of streptococcal isomerase and dehydrogenase

scientific article

Molecular Design of Seed Storage Proteins for Enhanced Food Physicochemical Properties ⬇️

scientific article published on January 1, 2011

Molecular identification of unsaturated uronate reductase prerequisite for alginate metabolism in Sphingomonas sp. A1

scientific article published on May 27, 2010

Mutational studies of the peptidoglycan hydrolase FlgJ of Sphingomonas sp. strain A1

scientific article

Reaction mechanism of alanine racemase from Bacillus stearothermophilus: x-ray crystallographic studies of the enzyme bound with N-(5'-phosphopyridoxyl)alanine

scientific article

Recognition of Heteropolysaccharide Alginate by Periplasmic Solute-Binding Proteins of a Bacterial ABC Transporter ⬇️

scientific article published on April 23, 2012

Structural Determinants Responsible for Substrate Recognition and Mode of Action in Family 11 Polysaccharide Lyases

scientific article

Structural Determinants in Streptococcal Unsaturated Glucuronyl Hydrolase for Recognition of Glycosaminoglycan Sulfate Groups ⬇️

scientific article published on December 8, 2010

Structural and enzymatic analysis of soybean beta-amylase mutants with increased pH optimum

scientific article

Structural and functional characterization of recombinant medaka fish alpha-amylase expressed in yeast Pichia pastoris ⬇️

scientific article published on May 18, 2012

Structural determinants in bacterial 2-keto-3-deoxy-D-gluconate dehydrogenase KduD for dual-coenzyme specificity

scientific article

Structure of 3-deoxy-manno-octulosonate cytidylyltransferase from Haemophilus influenzae complexed with the substrate 3-deoxy-manno-octulosonate in the beta-configuration

scientific article

Structure of a Bacterial ABC Transporter Involved in the Import of an Acidic Polysaccharide Alginate

scientific article

Structure of the core region of the soybean beta-conglycinin alpha' subunit

scientific article

Structure of β-1,4-mannanase from the common sea hareAplysia kurodaiat 1.05 Å resolution ⬇️

scientific article published on September 25, 2012

Substrate Specificity of Streptococcal Unsaturated Glucuronyl Hydrolases for Sulfated Glycosaminoglycan

scientific article

The 2.1-A crystal structure of native neuroserpin reveals unique structural elements that contribute to conformational instability

scientific article

The Crystal Structure of SDR-Type Pyridoxal 4-Dehydrogenase of Mesorhizobium loti ⬇️

scientific article published on February 7, 2011

The PD-1/PD-L1 complex resembles the antigen-binding Fv domains of antibodies and T cell receptors

scientific article

The crystal structure of a crustacean prophenoloxidase provides a clue to understanding the functionality of the type 3 copper proteins

scientific article

The extension peptide of plant ferritin from sea lettuce contributes to shell stability and surface hydrophobicity ⬇️

scientific article published on April 18, 2012

The role of group bulkiness in the catalytic activity of psychrophile cold-active protein tyrosine phosphatase

scientific article

The universal mechanism for iron translocation to the ferroxidase site in ferritin, which is mediated by the well conserved transit site

scientific article

Two crystal structures of lysyl-tRNA synthetase from Bacillus stearothermophilus in complex with lysyladenylate-like compounds: insights into the irreversible formation of the enzyme-bound adenylate of L-lysine hydroxamate

scientific article

X-ray analysis of bilirubin oxidase fromMyrothecium verrucariaat 2.3 Å resolution using a twinned crystal

scientific article

List of works by Bunzo Mikami

A novel structural fold in polysaccharide lyases: Bacillus subtilis family 11 rhamnogalacturonan lyase YesW with an eight-bladed beta-propeller

A structural factor responsible for substrate recognition by Bacillus sp. GL1 xanthan lyase that acts specifically on pyruvated side chains of xanthan

Atomic structure of recombinant thaumatin II reveals flexible conformations in two residues critical for sweetness and three consecutive glycine residues

Atomic structure of the sweet-tasting protein thaumatin I at pH 8.0 reveals the large disulfide-rich region in domain II to be sensitive to a pH change

Change in the crystal packing of soybean beta-amylase mutants substituted at a few surface amino acid residues

Characterization and crystallography of recombinant 7S globulins of Adzuki bean and structure-function relationships with 7S globulins of various crops

Conservation and divergence on plant seed 11S globulins based on crystal structures

Crystal Structure of Exotype Alginate Lyase Atu3025 from Agrobacterium tumefaciens

Crystal Structure of Family 14 Polysaccharide Lyase with pH-dependent Modes of Action

Crystal Structure of Plant Ferritin Reveals a Novel Metal Binding Site That Functions as a Transit Site for Metal Transfer in Ferritin

Crystal Structure of a Bacterial Unsaturated Glucuronyl Hydrolase with Specificity for Heparin

Crystal Structures of Protein Glutaminase and Its Pro Forms Converted into Enzyme-Substrate Complex ⬇️

Crystal structure of 5-formyl-3-hydroxy-2-methylpyridine 4-carboxylic acid 5-dehydrogenase, an NAD⁺-dependent dismutase from Mesorhizobium loti

Crystal structure of AlgQ2, a macromolecule (alginate)-binding protein of Sphingomonas sp. A1 at 2.0A resolution

Crystal structure of AlgQ2, a macromolecule (alginate)-binding protein of Sphingomonas sp. A1, complexed with an alginate tetrasaccharide at 1.6-A resolution

Crystal structure of Bacillus sp. GL1 xanthan lyase, which acts on the side chains of xanthan

Crystal structure of Pedobacter heparinus heparin lyase Hep III with the active site in a deep cleft

Crystal structure of UDP-N-acetylglucosamine enolpyruvyl transferase from Haemophilus influenzae in complex with UDP-N-acetylglucosamine and fosfomycin

Crystal structure of YihS in complex with D-mannose: structural annotation of Escherichia coli and Salmonella enterica yihS-encoded proteins to an aldose-ketose isomerase

Crystal structure of a major seed storage protein, 11S proglobulin, from Amaranthus hypochondriacus: insight into its physico-chemical properties

Crystal structure of a novel bacterial cell-surface flagellin binding to a polysaccharide

Crystal structure of bacterial cell-surface alginate-binding protein with an M75 peptidase motif ⬇️

Crystal structure of class III chitinase from pomegranate provides the insight into its metal storage capacity

Crystal structure of cold-active alkaline phosphatase from the psychrophile Shewanella sp

Crystal structure of glycoside hydrolase family 78 alpha-L-Rhamnosidase from Bacillus sp. GL1

Crystal structure of phosphopantetheine adenylyltransferase from Enterococcus faecalis in the ligand-unbound state and in complex with ATP and pantetheine

Crystal structure of pyridoxamine-pyruvate aminotransferase from Mesorhizobium loti MAFF303099

Crystal structure of pyridoxine 4-oxidase from Mesorhizobium loti

Crystal structure of soybean 11S globulin: Glycinin A3B4 homohexamer

Crystal structure of the glycosidase family 73 peptidoglycan hydrolase FlgJ

Crystal structure of the major peanut allergen Ara h 1 ⬇️

Crystal structure of the sweet-tasting protein thaumatin II at 1.27Å ⬇️

Formate oxidase, an enzyme of the glucose-methanol-choline oxidoreductase family, has a His-Arg pair and 8-formyl-FAD at the catalytic site

Heterosubunit Composition and Crystal Structures of a Novel Bacterial M16B Metallopeptidase ⬇️

High-resolution structure of the recombinant sweet-tasting protein thaumatin I ⬇️

Induced-fit motion of a lid loop involved in catalysis in alginate lyase A1-III

Loop-inserted and thermostabilized structure of P1-P1' cleaved ovalbumin mutant R339T

Metabolic fate of unsaturated glucuronic/iduronic acids from glycosaminoglycans: molecular identification and structure determination of streptococcal isomerase and dehydrogenase

Molecular Design of Seed Storage Proteins for Enhanced Food Physicochemical Properties ⬇️

Molecular identification of unsaturated uronate reductase prerequisite for alginate metabolism in Sphingomonas sp. A1

Mutational studies of the peptidoglycan hydrolase FlgJ of Sphingomonas sp. strain A1

Reaction mechanism of alanine racemase from Bacillus stearothermophilus: x-ray crystallographic studies of the enzyme bound with N-(5'-phosphopyridoxyl)alanine

Recognition of Heteropolysaccharide Alginate by Periplasmic Solute-Binding Proteins of a Bacterial ABC Transporter ⬇️

Structural Determinants Responsible for Substrate Recognition and Mode of Action in Family 11 Polysaccharide Lyases

Structural Determinants in Streptococcal Unsaturated Glucuronyl Hydrolase for Recognition of Glycosaminoglycan Sulfate Groups ⬇️

Structural and enzymatic analysis of soybean beta-amylase mutants with increased pH optimum

Structural and functional characterization of recombinant medaka fish alpha-amylase expressed in yeast Pichia pastoris ⬇️

Structural determinants in bacterial 2-keto-3-deoxy-D-gluconate dehydrogenase KduD for dual-coenzyme specificity

Structure of 3-deoxy-manno-octulosonate cytidylyltransferase from Haemophilus influenzae complexed with the substrate 3-deoxy-manno-octulosonate in the beta-configuration

Structure of a Bacterial ABC Transporter Involved in the Import of an Acidic Polysaccharide Alginate

Structure of the core region of the soybean beta-conglycinin alpha' subunit

Structure of β-1,4-mannanase from the common sea hareAplysia kurodaiat 1.05 Å resolution ⬇️

Substrate Specificity of Streptococcal Unsaturated Glucuronyl Hydrolases for Sulfated Glycosaminoglycan

The 2.1-A crystal structure of native neuroserpin reveals unique structural elements that contribute to conformational instability

The Crystal Structure of SDR-Type Pyridoxal 4-Dehydrogenase of Mesorhizobium loti ⬇️

The PD-1/PD-L1 complex resembles the antigen-binding Fv domains of antibodies and T cell receptors

The crystal structure of a crustacean prophenoloxidase provides a clue to understanding the functionality of the type 3 copper proteins

The extension peptide of plant ferritin from sea lettuce contributes to shell stability and surface hydrophobicity ⬇️

The role of group bulkiness in the catalytic activity of psychrophile cold-active protein tyrosine phosphatase

The universal mechanism for iron translocation to the ferroxidase site in ferritin, which is mediated by the well conserved transit site

Two crystal structures of lysyl-tRNA synthetase from Bacillus stearothermophilus in complex with lysyladenylate-like compounds: insights into the irreversible formation of the enzyme-bound adenylate of L-lysine hydroxamate

X-ray analysis of bilirubin oxidase fromMyrothecium verrucariaat 2.3 Å resolution using a twinned crystal