List of works - John Yates

Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription

scientific article

DTASelect and Contrast: tools for assembling and comparing protein identifications from shotgun proteomics

scientific article (publication date: 2002)

Microglia promote learning-dependent synapse formation through brain-derived neurotrophic factor.

scientific article

Analysis of the myosin-II-responsive focal adhesion proteome reveals a role for β-Pix in negative regulation of focal adhesion maturation

scientific article

Proteomic analysis of human parotid gland exosomes by multidimensional protein identification technology (MudPIT)

scientific article

Role of Rpn11 metalloprotease in deubiquitination and degradation by the 26S proteasome

scientific article

A comprehensive survey of the Plasmodium life cycle by genomic, transcriptomic, and proteomic analyses

scientific article

The human CENP-A centromeric nucleosome-associated complex

scientific article (publication date: May 2006)

Acetylation by Tip60 is required for selective histone variant exchange at DNA lesions

scientific article published on 4 November 2004

Proteomics by mass spectrometry: approaches, advances, and applications

scientific article (publication date: 2009)

Phospho-regulation of kinetochore-microtubule attachments by the Aurora kinase Ipl1p

scientific article

A role for the P-body component GW182 in microRNA function

scientific article

Assigning function to yeast proteins by integration of technologies.

scientific article

Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii

scientific article

Centromere-specific assembly of CENP-a nucleosomes is mediated by HJURP.

scientific article

The CREB coactivator TORC2 functions as a calcium- and cAMP-sensitive coincidence detector

scientific article

Protein analysis by shotgun/bottom-up proteomics

scientific article

Hsp90 cochaperone Aha1 downregulation rescues misfolding of CFTR in cystic fibrosis

scientific article

Neural palmitoyl-proteomics reveals dynamic synaptic palmitoylation

scientific article published on December 2008

The biological impact of mass-spectrometry-based proteomics

scientific article published on December 2007

Bora and the kinase Aurora a cooperatively activate the kinase Plk1 and control mitotic entry

scientific journal article

Nuclear membrane proteins with potential disease links found by subtractive proteomics

scientific article (publication date: 5 September 2003)

The CENP-H-I complex is required for the efficient incorporation of newly synthesized CENP-A into centromeres

scientific article (publication date: May 2006)

A conserved protein network controls assembly of the outer kinetochore and its ability to sustain tension

scientific article

Global analysis of protein palmitoylation in yeast

scientific article

A fasting inducible switch modulates gluconeogenesis via activator/coactivator exchange

scientific article

Global analysis of transcript and protein levels across the Plasmodium falciparum life cycle

scientific article

Molecular architecture of the human pre-mRNA 3' processing complex

scientific article published on February 2009

A method for the comprehensive proteomic analysis of membrane proteins

scientific article published on April 14, 2003

Shotgun identification of protein modifications from protein complexes and lens tissue

scientific article

Distinct argonaute-mediated 22G-RNA pathways direct genome surveillance in the C. elegans germline

scientific article published on October 2009

Aurora B phosphorylates spatially distinct targets to differentially regulate the kinetochore-microtubule interface

scientific article

Functional specialization of beta-arrestin interactions revealed by proteomic analysis

scientific article

Human SLX4 is a Holliday junction resolvase subunit that binds multiple DNA repair/recombination endonucleases

scientific article

Chd1 chromodomain links histone H3 methylation with SAGA- and SLIK-dependent acetylation

scientific article

Asymmetric CLASP-dependent nucleation of noncentrosomal microtubules at the trans-Golgi network

scientific article

Automated approach for quantitative analysis of complex peptide mixtures from tandem mass spectra

scientific article

Mass spectrometry for proteomics

scientific article published on October 2008

Functional proteomics reveals the biochemical niche of C. elegans DCR-1 in multiple small-RNA-mediated pathways

scientific article

Insulin modulates gluconeogenesis by inhibition of the coactivator TORC2.

scientific article published on 5 September 2007

The Set2 histone methyltransferase functions through the phosphorylated carboxyl-terminal domain of RNA polymerase II.

scientific article

LRRTM2 interacts with Neurexin1 and regulates excitatory synapse formation

scientific article

MS1, MS2, and SQT-three unified, compact, and easily parsed file formats for the storage of shotgun proteomic spectra and identifications.

scientific article published on January 2004

PYR/PYL/RCAR family members are major in-vivo ABI1 protein phosphatase 2C-interacting proteins in Arabidopsis

scientific article published on 26 October 2009

Mass spectrometry in high-throughput proteomics: ready for the big time

scientific article published in September 2010

Mammalian miRNA RISC recruits CAF1 and PABP to affect PABP-dependent deadenylation

scientific article

Chemical and biological approaches synergize to ameliorate protein-folding diseases.

scientific article

Cln3 activates G1-specific transcription via phosphorylation of the SBF bound repressor Whi5.

scientific article

Isogenic human iPSC Parkinson's model shows nitrosative stress-induced dysfunction in MEF2-PGC1α transcription

scientific article published on 27 November 2013

Jmjd6 catalyses lysyl-hydroxylation of U2AF65, a protein associated with RNA splicing

scientific article

List of works by John Yates

Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription

DTASelect and Contrast: tools for assembling and comparing protein identifications from shotgun proteomics

Microglia promote learning-dependent synapse formation through brain-derived neurotrophic factor.

Analysis of the myosin-II-responsive focal adhesion proteome reveals a role for β-Pix in negative regulation of focal adhesion maturation

Proteomic analysis of human parotid gland exosomes by multidimensional protein identification technology (MudPIT)

Role of Rpn11 metalloprotease in deubiquitination and degradation by the 26S proteasome

A comprehensive survey of the Plasmodium life cycle by genomic, transcriptomic, and proteomic analyses

The human CENP-A centromeric nucleosome-associated complex

Acetylation by Tip60 is required for selective histone variant exchange at DNA lesions

Proteomics by mass spectrometry: approaches, advances, and applications

Phospho-regulation of kinetochore-microtubule attachments by the Aurora kinase Ipl1p

A role for the P-body component GW182 in microRNA function

Assigning function to yeast proteins by integration of technologies.

Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii

Centromere-specific assembly of CENP-a nucleosomes is mediated by HJURP.

The CREB coactivator TORC2 functions as a calcium- and cAMP-sensitive coincidence detector

Protein analysis by shotgun/bottom-up proteomics

Hsp90 cochaperone Aha1 downregulation rescues misfolding of CFTR in cystic fibrosis

Neural palmitoyl-proteomics reveals dynamic synaptic palmitoylation

The biological impact of mass-spectrometry-based proteomics

Bora and the kinase Aurora a cooperatively activate the kinase Plk1 and control mitotic entry

Nuclear membrane proteins with potential disease links found by subtractive proteomics

The CENP-H-I complex is required for the efficient incorporation of newly synthesized CENP-A into centromeres

A conserved protein network controls assembly of the outer kinetochore and its ability to sustain tension

Global analysis of protein palmitoylation in yeast

A fasting inducible switch modulates gluconeogenesis via activator/coactivator exchange

Global analysis of transcript and protein levels across the Plasmodium falciparum life cycle

Molecular architecture of the human pre-mRNA 3' processing complex

A method for the comprehensive proteomic analysis of membrane proteins

Shotgun identification of protein modifications from protein complexes and lens tissue

Distinct argonaute-mediated 22G-RNA pathways direct genome surveillance in the C. elegans germline

Aurora B phosphorylates spatially distinct targets to differentially regulate the kinetochore-microtubule interface

Functional specialization of beta-arrestin interactions revealed by proteomic analysis

Human SLX4 is a Holliday junction resolvase subunit that binds multiple DNA repair/recombination endonucleases

Chd1 chromodomain links histone H3 methylation with SAGA- and SLIK-dependent acetylation

Asymmetric CLASP-dependent nucleation of noncentrosomal microtubules at the trans-Golgi network

Automated approach for quantitative analysis of complex peptide mixtures from tandem mass spectra

Mass spectrometry for proteomics

Functional proteomics reveals the biochemical niche of C. elegans DCR-1 in multiple small-RNA-mediated pathways

Insulin modulates gluconeogenesis by inhibition of the coactivator TORC2.

The Set2 histone methyltransferase functions through the phosphorylated carboxyl-terminal domain of RNA polymerase II.

LRRTM2 interacts with Neurexin1 and regulates excitatory synapse formation

MS1, MS2, and SQT-three unified, compact, and easily parsed file formats for the storage of shotgun proteomic spectra and identifications.

PYR/PYL/RCAR family members are major in-vivo ABI1 protein phosphatase 2C-interacting proteins in Arabidopsis

Mass spectrometry in high-throughput proteomics: ready for the big time

Mammalian miRNA RISC recruits CAF1 and PABP to affect PABP-dependent deadenylation

Chemical and biological approaches synergize to ameliorate protein-folding diseases.

Cln3 activates G1-specific transcription via phosphorylation of the SBF bound repressor Whi5.

Isogenic human iPSC Parkinson's model shows nitrosative stress-induced dysfunction in MEF2-PGC1α transcription

Jmjd6 catalyses lysyl-hydroxylation of U2AF65, a protein associated with RNA splicing