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List of works by John Yates

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Metabolic labeling of mammalian organisms with stable isotopes for quantitative proteomic analysis

scientific article published in September 2004
Identification of Long-Lived Proteins Reveals Exceptional Stability of Essential Cellular Structures

scientific article published on August 29, 2013
Global analysis of protein sumoylation in Saccharomyces cerevisiae

scientific article
The application of mass spectrometry to membrane proteomics

scientific article
BRD7, a novel PBAF-specific SWI/SNF subunit, is required for target gene activation and repression in embryonic stem cells

scientific article
Direct proteomic mapping of the lung microvascular endothelial cell surface in vivo and in cell culture

scientific article published on 18 July 2004
Proteomic analysis of isolated chlamydomonas centrioles reveals orthologs of ciliary-disease genes

scientific article published on June 2005
Hepatic glucose sensing via the CREB coactivator CRTC2.

scientific article published in March 2008
Analysis of quantitative proteomic data generated via multidimensional protein identification technology

scientific article
Protein pathway and complex clustering of correlated mRNA and protein expression analyses in Saccharomyces cerevisiae

scholarly article
A quantitative analysis software tool for mass spectrometry-based proteomics

scientific article
PRAK is essential for ras-induced senescence and tumor suppression

scientific article
Stress-independent activation of XBP1s and/or ATF6 reveals three functionally diverse ER proteostasis environments

scientific article published on 11 April 2013
The Exopolysaccharide Matrix Modulates the Interaction between 3D Architecture and Virulence of a Mixed-Species Oral Biofilm

scientific article published on April 5, 2012
The proteomes of human parotid and submandibular/sublingual gland salivas collected as the ductal secretions

scientific article
ZW10 links mitotic checkpoint signaling to the structural kinetochore.

scientific article
BTB/POZ domain proteins are putative substrate adaptors for cullin 3 ubiquitin ligases

scientific article published on 01 September 2003
TRB3 links the E3 ubiquitin ligase COP1 to lipid metabolism

scientific article
Tor kinases are in distinct membrane-associated protein complexes in Saccharomyces cerevisiae

scientific article
Progressive degeneration of human neural stem cells caused by pathogenic LRRK2

scientific article
Adaptation of energy metabolism in breast cancer brain metastases

scientific article published in February 2007
Probability-based validation of protein identifications using a modified SEQUEST algorithm

scientific article published in November 2002
Quantitative mass spectrometry identifies insulin signaling targets in C. elegans

scientific article published in August 2007
Identification of Plasmodium falciparum antigens by antigenic analysis of genomic and proteomic data

scientific article
Systematic identification of C. elegans miRISC proteins, miRNAs, and mRNA targets by their interactions with GW182 proteins AIN-1 and AIN-2.

scientific article
Architecture of the budding yeast kinetochore reveals a conserved molecular core

scientific article
Large-scale database searching using tandem mass spectra: looking up the answer in the back of the book

scientific article
Replication-independent histone deposition by the HIR complex and Asf1.

scientific article
The human kinetochore Ska1 complex facilitates microtubule depolymerization-coupled motility

scientific article
Swi1 and Swi3 are components of a replication fork protection complex in fission yeast.

scientific article
Extremely long-lived nuclear pore proteins in the rat brain

scientific article published on 2 February 2012
A complex containing the Sm protein CAR-1 and the RNA helicase CGH-1 is required for embryonic cytokinesis in Caenorhabditis elegans

scientific article
The novel SLIK histone acetyltransferase complex functions in the yeast retrograde response pathway.

scientific article
Reduced histone deacetylase 7 activity restores function to misfolded CFTR in cystic fibrosis

scientific article
Cleavage N-terminal to proline: analysis of a database of peptide tandem mass spectra

scientific article
TOR complex 2 integrates cell movement during chemotaxis and signal relay in Dictyostelium

scientific article
A streamlined platform for high-content functional proteomics of primary human specimens

scientific article published in September 2005
Isobaric Labeling-Based Relative Quantification in Shotgun Proteomics

scientific article published on November 4, 2014
TOR complex 1 includes a novel component, Tco89p (YPL180w), and cooperates with Ssd1p to maintain cellular integrity in Saccharomyces cerevisiae

scientific article
Distinct protein classes including novel merozoite surface antigens in Raft-like membranes of Plasmodium falciparum

scientific article (publication date: 2 December 2005)
Deubiquitination of histone H2B by a yeast acetyltransferase complex regulates transcription.

scientific article published on 3 December 2003
A correlation algorithm for the automated quantitative analysis of shotgun proteomics data

scientific article
A hormone-dependent module regulating energy balance

scientific article
Validation of tandem mass spectrometry database search results using DTASelect

scientific article published on January 2007
Proteomic Analysis of Mammalian Primary Cilia

scientific article published on February 9, 2012
Code developments to improve the efficiency of automated MS/MS spectra interpretation

scientific article published in May 2002
RNA-dependent cysteine biosynthesis in archaea

scientific article published in March 2005
Proteomic survey of metabolic pathways in rice

scientific article
A new mechanism controlling kinetochore-microtubule interactions revealed by comparison of two dynein-targeting components: SPDL-1 and the Rod/Zwilch/Zw10 complex

scientific article published on September 2008
Arginylation of beta-actin regulates actin cytoskeleton and cell motility

scientific article

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