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List of works by Gregory Humphrey

A Multi-Omics Characterization of the Natural Product Potential of Tropical Filamentous Marine Cyanobacteria

scientific article published on 06 January 2021

A communal catalogue reveals Earth's multiscale microbial diversity

scientific article published in November 2017

A comparison of DNA/RNA extraction protocols for high-throughput sequencing of microbial communities

scientific article published on 14 November 2020

A gut microbiome signature for cirrhosis due to nonalcoholic fatty liver disease

scientific article published on 29 March 2019

American Gut: an Open Platform for Citizen Science Microbiome Research

article

CD8 T cells drive anorexia, dysbiosis, and blooms of a commensal with immunosuppressive potential after viral infection

scientific article published on 21 September 2020

Cohabiting family members share microbiota with one another and with their dogs

scientific article

Comparative Analyses of Vertebrate Gut Microbiomes Reveal Convergence between Birds and Bats

scientific article published on 07 January 2020

Consumption of Fermented Foods Is Associated with Systematic Differences in the Gut Microbiome and Metabolome

scientific article published on 17 March 2020

DNA extraction for streamlined metagenomics of diverse environmental samples

scientific article published on June 2017

Depression in Individuals Coinfected with HIV and HCV Is Associated with Systematic Differences in the Gut Microbiome and Metabolome

scientific article published on 29 September 2020

EMP Sample Submission Guide v1 (protocols.io.pfqdjmw)

Evaluating Metagenomic Prediction of the Metaproteome in a 4.5-Year Study of a Patient with Crohn's Disease

Evolutionary trends in host physiology outweigh dietary niche in structuring primate gut microbiomes

scientific article published on 11 July 2018

Exposure to toxic metals triggers unique responses from the rat gut microbiota.

scientific article published on 26 April 2018

From Sample to Multi-Omics Conclusions in under 48 Hours

scientific article (publication date: 26 April 2016)

Gastrointestinal Surgery for Inflammatory Bowel Disease Persistently Lowers Microbiome and Metabolome Diversity

scientific article published on 07 October 2020

Global chemical effects of the microbiome include new bile-acid conjugations

scientific article published on 26 February 2020

High-Resolution Longitudinal Dynamics of the Cystic Fibrosis Sputum Microbiome and Metabolome through Antibiotic Therapy

scientific article published on 23 June 2020

High-Throughput Miniaturized 16S rRNA Amplicon Library Preparation Reduces Costs while Preserving Microbiome Integrity

Improved Bacterial 16S rRNA Gene (V4 and V4-5) and Fungal Internal Transcribed Spacer Marker Gene Primers for Microbial Community Surveys ⬇️

scientific article

Intermittent Hypoxia and Hypercapnia Reproducibly Change the Gut Microbiome and Metabolome across Rodent Model Systems

Intermittent Hypoxia and Hypercapnia, a Hallmark of Obstructive Sleep Apnea, Alters the Gut Microbiome and Metabolome.

scientific article published in May 2018

Microbial context predicts SARS-CoV-2 prevalence in patients and the hospital built environment

scientific article published on 22 November 2020

Molecular and Microbial Microenvironments in Chronically Diseased Lungs Associated with Cystic Fibrosis

scientific article published on 24 September 2019

Neutrophilic proteolysis in the cystic fibrosis lung correlates with a pathogenic microbiome

article

Phylogenetic and ecological factors impact the gut microbiota of two Neotropical primate species

scientific article published on 24 November 2015

Preservation Methods Differ in Fecal Microbiome Stability, Affecting Suitability for Field Studies

scientific article published on 03 May 2016

Quantifying and Understanding Well-to-Well Contamination in Microbiome Research

scientific article published on 25 June 2019

SARS-CoV-2 Infection Among Symptom-Free Healthcare Workers

scientific article published on 05 August 2020

The Oral and Skin Microbiomes of Captive Komodo Dragons Are Significantly Shared with Their Habitat

scientific article published on July 2016

The effect of legume supplementation on the gut microbiota in rural Malawian infants aged 6 to 12 months

scientific article published on 11 February 2020

The genetic basis for adaptation of model-designed syntrophic co-cultures

article

The impact of skin care products on skin chemistry and microbiome dynamics

scientific article published on 12 June 2019

Three-Dimensional Microbiome and Metabolome Cartography of a Diseased Human Lung

scientific article published on 17 October 2017

Translocation of Viable Gut Microbiota to Mesenteric Adipose Drives Formation of Creeping Fat in Humans

scientific article published on 22 September 2020

Triplicate PCR reactions for 16S rRNA gene amplicon sequencing are unnecessary

scientific article published on 24 May 2019

Type I IFNs and CD8 T cells increase intestinal barrier permeability after chronic viral infection

scientific article published on 01 December 2020

Ultra-low input single tube linked-read library method enables short-read second-generation sequencing systems to generate highly accurate and economical long-range sequencing information routinely

scientific article published on 15 June 2020

Using the gut microbiota as a novel tool for examining colobine primate GI health

article

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