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List of works by Yue Wang

A blockchain-enabled sharing platform for personal health records

scientific article published in 2023

A ground truth based comparative study on clustering of gene expression data.

scientific article

AISAIC: a software suite for accurate identification of significant aberrations in cancers

scientific article

Antiestrogen Resistance and the Application of Systems Biology

scientific article published on December 2012

Antiestrogen resistance in breast cancer and the role of estrogen receptor signaling.

scientific article

Association of interferon regulatory factor-1, nucleophosmin, nuclear factor-kappaB, and cyclic AMP response element binding with acquired resistance to Faslodex (ICI 182,780).

scientific article

BACOM2.0 facilitates absolute normalization and quantification of somatic copy number alterations in heterogeneous tumor

scientific article

BMRF-Net: a software tool for identification of protein interaction subnetworks by a bagging Markov random field-based method.

scientific article published on 8 March 2015

Biologically inspired survival analysis based on integrating gene expression as mediator with genomic variants.

scientific article published on 31 August 2016

Biomarker identification by knowledge-driven multilevel ICA and motif analysis.

scientific article

ChIP-BIT: Bayesian inference of target genes using a novel joint probabilistic model of ChIP-seq profiles.

scientific article published on 23 December 2015

Cross phenotype normalization of microarray data

scientific article

DDN: a caBIG® analytical tool for differential network analysis

scientific article

Data-driven detection of subtype-specific differentially expressed genes

scientific article published on 11 January 2021

Dynamic modelling of oestrogen signalling and cell fate in breast cancer cells

scientific article

Effects of In Utero Exposure to Ethinyl Estradiol on Tamoxifen Resistance and Breast Cancer Recurrence in a Preclinical Model.

scientific article published on 8 September 2016

Endoplasmic reticulum stress, the unfolded protein response, and gene network modeling in antiestrogen resistant breast cancer

scientific article published on March 2011

Endoplasmic reticulum stress, the unfolded protein response, autophagy, and the integrated regulation of breast cancer cell fate.

scientific article published in March 2012

Estrogen receptor alpha positive breast tumors and breast cancer cell lines share similarities in their transcriptome data structures.

scientific article

G-DOC: a systems medicine platform for personalized oncology

scientific article

GIST: a Gibbs sampler to identify intracellular signal transduction pathways

scientific article published in January 2011

Gene module identification from microarray data using nonnegative independent component analysis

scientific article

Gene network signaling in hormone responsiveness modifies apoptosis and autophagy in breast cancer cells

scientific article published on March 2009

Gene selection for multiclass prediction by weighted Fisher criterion

scientific article

Gene signaling pathways mediating the opposite effects of prepubertal low-fat and high-fat n-3 polyunsaturated fatty acid diets on mammary cancer risk.

scientific article published on December 2008

Genome-wide identification of significant aberrations in cancer genome.

scientific article

Identification of condition-specific regulatory modules through multi-level motif and mRNA expression analysis.

scientific article

Identifying cancer biomarkers by network-constrained support vector machines

scientific article

Identifying protein interaction subnetworks by a bagging Markov random field-based method.

scientific article published on 17 November 2012

Inferring network interactions using recurrent neural networks and swarm intelligence

scientific article published in January 2006

Integration of Network Biology and Imaging to Study Cancer Phenotypes and Responses

scientific article

Iterative normalization of cDNA microarray data.

scientific article

KDDN: an open-source Cytoscape app for constructing differential dependency networks with significant rewiring

scientific article

Knowledge-fused differential dependency network models for detecting significant rewiring in biological networks ⬇️

scientific article

Knowledge-guided gene ranking by coordinative component analysis

scientific article

Latent variable and nICA modeling of pathway gene module composite.

scientific article

Mathematical modelling of transcriptional heterogeneity identifies novel markers and subpopulations in complex tissues

scientific article

Motif-directed network component analysis for regulatory network inference

scientific article

Multilevel support vector regression analysis to identify condition-specific regulatory networks

scientific article

Optimized multilayer perceptrons for molecular classification and diagnosis using genomic data.

scientific article

Radiogenomic signatures reveal multiscale intratumour heterogeneity associated with biological functions and survival in breast cancer

scientific article published on 25 September 2020

Robust identification of transcriptional regulatory networks using a Gibbs sampler on outlier sum statistic

scientific article published in 2014

Systems biology: perspectives on multiscale modeling in research on endocrine-related cancers

scientific article published on 01 June 2019

The properties of high-dimensional data spaces: implications for exploring gene and protein expression data.

scientific article

UNDO: a Bioconductor R package for unsupervised deconvolution of mixed gene expressions in tumor samples.

scientific article

Unsupervised deconvolution of dynamic imaging reveals intratumor vascular heterogeneity and repopulation dynamics

scientific article

caBIG VISDA: modeling, visualization, and discovery for cluster analysis of genomic data

scientific article

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