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List of works by Jörg Linde

A Novel Hybrid Iron Regulation Network Combines Features from Pathogenic and Nonpathogenic Yeasts

scientific article published on 18 October 2016

An Interspecies Regulatory Network Inferred from Simultaneous RNA-seq of Candida albicans Invading Innate Immune Cells

scientific article published on 12 March 2012

Biomarker-based classification of bacterial and fungal whole-blood infections in a genome-wide expression study

scientific article

Candida albicans infection leads to barrier breakdown and a MAPK/NF-κB mediated stress response in the intestinal epithelial cell line C2BBe1.

scientific article published on 10 January 2016

Comparative Genomics of Serial Candida glabrata Isolates and the Rapid Acquisition of Echinocandin Resistance during Therapy

scientific article published on 29 January 2019

Comparative Study on Alternative Splicing in Human Fungal Pathogens Suggests Its Involvement During Host Invasion

scientific article published on 02 October 2018

Computational prediction of molecular pathogen-host interactions based on dual transcriptome data

scientific article

Correction: Gene Expansion Shapes Genome Architecture in the Human Pathogen Lichtheimia corymbifera: An Evolutionary Genomics Analysis in the Ancient Terrestrial Mucorales (Mucoromycotina).

scientific article published on 5 December 2016

Corrigendum: Differential transcriptional responses to Ebola and Marburg virus infection in bat and human cells

scientific article

Corrigendum: Dual-species transcriptional profiling during systemic candidiasis reveals organ-specific host-pathogen interactions

scientific article published on 19 December 2016

Data- and knowledge-based modeling of gene regulatory networks: an update

scientific article

Data-based Reconstruction of Gene Regulatory Networks of Fungal Pathogens

scientific article

De Novo Whole-Genome Sequence and Genome Annotation of Lichtheimia ramosa

scientific article published on 11 September 2014

Defining the transcriptomic landscape of Candida glabrata by RNA-Seq.

scientific article

Differential transcriptional responses to Ebola and Marburg virus infection in bat and human cells

scientific article

Draft Genome Sequence and Gene Annotation of the Entomopathogenic Fungus Verticillium hemipterigenum

scientific article published on 22 January 2015

Draft Genome Sequence of Streptomyces iranensis. ⬇️

scientific article published on 17 July 2014

Draft Genome Sequence of the Fungus Penicillium brasilianum MG11

scientific article published on 3 September 2015

Draft Genome Sequences of Fungus Aspergillus calidoustus

scientific article

Draft Genome Sequences of Symbiotic and Nonsymbiotic Rhizopus microsporus Strains CBS 344.29 and ATCC 62417.

scientific article published on 22 January 2015

Draft genome sequence of multi-resistant Salmonella enterica subsp. enterica serovar Rissen strain 19CS0416 isolated from Vietnam reveals mcr-1 plasmid mediated resistance to colistin already in 2013

scientific article published on 03 July 2020

Dual-species transcriptional profiling during systemic candidiasis reveals organ-specific host-pathogen interactions

scientific article

Dynein Heavy Chain, Encoded by Two Genes in Agaricomycetes, Is Required for Nuclear Migration in Schizophyllum commune

scientific article published on 18 August 2015

Emergence of Multidrug-Resistant Salmonella enterica Subspecies enterica Serovar Infantis of Multilocus Sequence Type 2283 in German Broiler Farms

scientific article published on 17 July 2020

Enzymatic Bioweathering and Metal Mobilization From Black Slate by the Basidiomycete

scientific article published in 2018

Facing the challenges of multiscale modelling of bacterial and fungal pathogen-host interactions

scientific article published on 08 February 2016

FungiFun2: a comprehensive online resource for systematic analysis of gene lists from fungal species

scientific article

FungiFun: A web-based application for functional categorization of fungal genes and proteins ⬇️

scientific article published on November 10, 2010

Gene expansion shapes genome architecture in the human pathogen Lichtheimia corymbifera: an evolutionary genomics analysis in the ancient terrestrial mucorales (Mucoromycotina)

scientific article

Genome-Wide Expression Profiling Reveals S100B as Biomarker for Invasive Aspergillosis

scientific article published on 21 March 2016

Genome-Wide Scale-Free Network Inference for Candida albicans ⬇️

scientific article published on February 16, 2012

Global transcriptome sequencing identifies chlamydospore specific markers in Candida albicans and Candida dubliniensis

scientific article

How to Predict Molecular Interactions between Species?

scientific article

LASSIM-A network inference toolbox for genome-wide mechanistic modeling

scientific article

Microevolution of Candida albicans in macrophages restores filamentation in a nonfilamentous mutant

scientific article (publication date: December 2014)

Network Modeling Reveals Cross Talk of MAP Kinases during Adaptation to Caspofungin Stress in Aspergillus fumigatus

scientific article

Network Properties for Ranking Predicted miRNA Targets in Breast Cancer

scientific article

Phenotypic and WGS-derived antimicrobial resistance profiles of clinical and non-clinical Acinetobacter baumannii isolates from Germany and Vietnam

scientific article published on 01 August 2020

Regulatory interactions for iron homeostasis in Aspergillus fumigatus inferred by a Systems Biology approach ⬇️

scientific article published on January 19, 2012

Regulatory network modelling of iron acquisition by a fungal pathogen in contact with epithelial cells

scientific article

Regulatory networks controlling nitrogen sensing and uptake in Candida albicans

scientific article

Smelling the difference: Transcriptome, proteome and volatilome changes after mating

scientific article

Specific and Novel microRNAs Are Regulated as Response to Fungal Infection in Human Dendritic Cells

scientific article published on 23 February 2017

Systems biology of microbial infection

scientific article published on 12 September 2012

The extended TILAR approach: a novel tool for dynamic modeling of the transcription factor network regulating the adaption to in vitro cultivation of murine hepatocytes

scientific article

The novel globin protein fungoglobin is involved in low oxygen adaptation of Aspergillus fumigatus

scientific article published on 7 July 2014

Treatment with etanercept and low monocyte concentration contribute to the risk of invasive aspergillosis in patients post allogeneic stem cell transplantation

scientific article published on 21 November 2019

Tricholoma vaccinum host communication during ectomycorrhiza formation

scientific article published on 7 October 2015

Two's company: studying interspecies relationships with dual RNA-seq

scientific article published on 25 September 2017

Whole Genome Sequencing for Studying Bacillus anthracis from an Outbreak in the Abruzzo Region of Italy

scientific article published on 08 January 2020

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