List of works - Karolina Edlund

1p36 deletion is a marker for tumour dissemination in microsatellite stable stage II-III colon cancer

scientific article

A Comprehensive Analysis of Human Gene Expression Profiles Identifies Stromal Immunoglobulin C as a Compatible Prognostic Marker in Human Solid Tumors

article

Aberrantly activated claudin 6 and 18.2 as potential therapy targets in non-small-cell lung cancer

article published in 2014

An integrative analysis of the tumorigenic role of TAZ in human non-small cell lung cancer.

scientific article

Analysis of the human tissue-specific expression by genome-wide integration of transcriptomics and antibody-based proteomics

scientific article published on 05 December 2013

Biomarker discovery in non-small cell lung cancer: integrating gene expression profiling, meta-analysis, and tissue microarray validation.

scientific article published on 2 October 2012

CD99 is a novel prognostic stromal marker in non-small cell lung cancer

scientific article

Consistent mutation status within histologically heterogeneous lung cancer lesions ⬇️

scientific article published on October 1, 2012

Corrigendum to "Gene networks and transcription factor motifs defining the differentiation of human stem cells into hepatocyte-like cells" [J Hepatol 2015;63:934-942].

scientific article published on 2 December 2015

Data-driven unbiased curation of the TP53 tumor suppressor gene mutation database and validation by ultradeep sequencing of human tumors

scientific article

Defining the human adipose tissue proteome to reveal metabolic alterations in obesity

scientific article published on 25 September 2014

Epsin Family Member 3 and Ribosome-Related Genes Are Associated with Late Metastasis in Estrogen Receptor-Positive Breast Cancer and Long-Term Survival in Non-Small Cell Lung Cancer Using a Genome-Wide Identification and Validation Strategy

scientific article

Expression of human skin-specific genes defined by transcriptomics and antibody-based profiling

scientific article

Forkhead box F1 regulates tumor-promoting properties of cancer-associated fibroblasts in lung cancer

scientific article published on 16 March 2010

Gelsolin Is Associated with Longer Metastasis-free Survival and Reduced Cell Migration in Estrogen Receptor-positive Breast Cancer.

scientific article published on October 2015

Gene Copy Number Aberrations Are Associated with Survival in Histologic Subgroups of Non-small Cell Lung Cancer

article

Gene network activity in cultivated primary hepatocytes is highly similar to diseased mammalian liver tissue

scientific article published on 23 June 2016

Gene networks and transcription factor motifs defining the differentiation of stem cells into hepatocyte-like cells.

scientific article published on 25 May 2015

Genomic and transcriptional alterations in lung adenocarcinoma in relation to EGFR and KRAS mutation status

scientific article

Glycerol-3-phosphate Acyltransferase 1 Promotes Tumor Cell Migration and Poor Survival in Ovarian Carcinoma.

scientific article published on 26 June 2017

HR-MAS NMR Based Quantitative Metabolomics in Breast Cancer

scientific article published in 2019

Identification of sample annotation errors in gene expression datasets

scientific article

Immunohistochemistry-based prognostic biomarkers in NSCLC: novel findings on the road to clinical use?

scientific article

Impact of intratumoral heterogeneity of breast cancer tissue on quantitative metabolomics using high-resolution magic angle spinning 1 H NMR spectroscopy

scientific article

Impact of thawing on RNA integrity and gene expression analysis in fresh frozen tissue

scientific article published on 01 March 2009

In situ mutation detection and visualization of intratumor heterogeneity for cancer research and diagnostics

scientific article (publication date: December 2013)

Inconsistent results in the analysis of ALK rearrangements in non-small cell lung cancer

scientific article

Inflammation-associated suppression of metabolic gene networks in acute and chronic liver disease

scientific article published on 09 January 2020

Integrative analysis of genome-wide gene copy number changes and gene expression in non-small cell lung cancer.

scientific article published on 7 November 2017

KRAS analysis in colorectal carcinoma: Analytical aspects of Pyrosequencing and allele-specific PCR in clinical practice ⬇️

scientific article published on December 1, 2010

LIPG-promoted lipid storage mediates adaptation to oxidative stress in breast cancer

scientific article published on 07 February 2019

LRIG1 is a prognostic biomarker in non-small cell lung cancer

scientific article published on 27 March 2015

Loss of circadian clock gene expression is associated with tumor progression in breast cancer.

scientific article

Metabolic profiling of ob/ob mouse fatty liver using HR-MAS 1H-NMR combined with gene expression analysis reveals alterations in betaine metabolism and the transsulfuration pathway

scientific article

Microsatellite instability and mutations in BRAF and KRAS are significant predictors of disseminated disease in colon cancer

scientific article

Prediction of human drug-induced liver injury (DILI) in relation to oral doses and blood concentrations

scientific article published on 27 June 2019

Profiling cancer testis antigens in non-small-cell lung cancer

scientific article published on 07 July 2016

Prognostic Impact of Tumor Cell Programmed Death Ligand 1 Expression and Immune Cell Infiltration in NSCLC

scientific article published on 09 January 2019

Prognostic impact of COX-2 in non-small cell lung cancer: a comprehensive compartment-specific evaluation of tumor and stromal cell expression

scientific article published on 31 October 2014

Prognostic influence of pre-operative C-reactive protein in node-negative breast cancer patients

scientific article

Quantification of normal cell fraction and copy number neutral LOH in clinical lung cancer samples using SNP array data

scientific article (publication date: 26 June 2009)

RANK rewires energy homeostasis in lung cancer cells and drives primary lung cancer.

scientific article published on 8 November 2017

Reaching the limits of prognostication in non-small cell lung cancer: an optimized biomarker panel fails to outperform clinical parameters.

scientific article

Relevance of the incubation period in cytotoxicity testing with primary human hepatocytes

article

Road Map for Development of Stem Cell-Based Alternative Test Methods

scientific article published on 23 May 2019

The Human Endometrium-Specific Proteome Defined by Transcriptomics and Antibody-Based Profiling

scientific article published on 21 October 2015

The human gastrointestinal tract-specific transcriptome and proteome as defined by RNA sequencing and antibody-based profiling

scientific article published on May 2014

The human liver-specific proteome defined by transcriptomics and antibody-based profiling

scientific article

The kidney transcriptome and proteome defined by transcriptomics and antibody-based profiling

scientific article

The lung-specific proteome defined by integration of transcriptomics and antibody-based profiling.

scientific article

The prognostic relevance of tumour-infiltrating plasma cells and immunoglobulin kappa C indicates an important role of the humoral immune response in non-small cell lung cancer

scientific article

The protein kinase LKB1 negatively regulates bone morphogenetic protein receptor signaling

scientific article published on 19 December 2015

The transcriptomic and proteomic landscapes of bone marrow and secondary lymphoid tissues

scientific article published on 26 December 2014

Toxicity of fluoride: critical evaluation of evidence for human developmental neurotoxicity in epidemiological studies, animal experiments and in vitro analyses

scientific article published on 08 May 2020

Toxicogenomics directory of chemically exposed human hepatocytes

scientific article

Toxicogenomics directory of rat hepatotoxicants in vivo and in cultivated hepatocytes

scientific article published on 03 December 2018

List of works by Karolina Edlund

1p36 deletion is a marker for tumour dissemination in microsatellite stable stage II-III colon cancer

A Comprehensive Analysis of Human Gene Expression Profiles Identifies Stromal Immunoglobulin C as a Compatible Prognostic Marker in Human Solid Tumors

Aberrantly activated claudin 6 and 18.2 as potential therapy targets in non-small-cell lung cancer

An integrative analysis of the tumorigenic role of TAZ in human non-small cell lung cancer.

Analysis of the human tissue-specific expression by genome-wide integration of transcriptomics and antibody-based proteomics

Biomarker discovery in non-small cell lung cancer: integrating gene expression profiling, meta-analysis, and tissue microarray validation.

CD99 is a novel prognostic stromal marker in non-small cell lung cancer

Consistent mutation status within histologically heterogeneous lung cancer lesions ⬇️

Corrigendum to "Gene networks and transcription factor motifs defining the differentiation of human stem cells into hepatocyte-like cells" [J Hepatol 2015;63:934-942].

Data-driven unbiased curation of the TP53 tumor suppressor gene mutation database and validation by ultradeep sequencing of human tumors

Defining the human adipose tissue proteome to reveal metabolic alterations in obesity

Epsin Family Member 3 and Ribosome-Related Genes Are Associated with Late Metastasis in Estrogen Receptor-Positive Breast Cancer and Long-Term Survival in Non-Small Cell Lung Cancer Using a Genome-Wide Identification and Validation Strategy

Expression of human skin-specific genes defined by transcriptomics and antibody-based profiling

Forkhead box F1 regulates tumor-promoting properties of cancer-associated fibroblasts in lung cancer

Gelsolin Is Associated with Longer Metastasis-free Survival and Reduced Cell Migration in Estrogen Receptor-positive Breast Cancer.

Gene Copy Number Aberrations Are Associated with Survival in Histologic Subgroups of Non-small Cell Lung Cancer

Gene network activity in cultivated primary hepatocytes is highly similar to diseased mammalian liver tissue

Gene networks and transcription factor motifs defining the differentiation of stem cells into hepatocyte-like cells.

Genomic and transcriptional alterations in lung adenocarcinoma in relation to EGFR and KRAS mutation status

Glycerol-3-phosphate Acyltransferase 1 Promotes Tumor Cell Migration and Poor Survival in Ovarian Carcinoma.

HR-MAS NMR Based Quantitative Metabolomics in Breast Cancer

Identification of sample annotation errors in gene expression datasets

Immunohistochemistry-based prognostic biomarkers in NSCLC: novel findings on the road to clinical use?

Impact of intratumoral heterogeneity of breast cancer tissue on quantitative metabolomics using high-resolution magic angle spinning 1 H NMR spectroscopy

Impact of thawing on RNA integrity and gene expression analysis in fresh frozen tissue

In situ mutation detection and visualization of intratumor heterogeneity for cancer research and diagnostics

Inconsistent results in the analysis of ALK rearrangements in non-small cell lung cancer

Inflammation-associated suppression of metabolic gene networks in acute and chronic liver disease

Integrative analysis of genome-wide gene copy number changes and gene expression in non-small cell lung cancer.

KRAS analysis in colorectal carcinoma: Analytical aspects of Pyrosequencing and allele-specific PCR in clinical practice ⬇️

LIPG-promoted lipid storage mediates adaptation to oxidative stress in breast cancer

LRIG1 is a prognostic biomarker in non-small cell lung cancer

Loss of circadian clock gene expression is associated with tumor progression in breast cancer.

Metabolic profiling of ob/ob mouse fatty liver using HR-MAS 1H-NMR combined with gene expression analysis reveals alterations in betaine metabolism and the transsulfuration pathway

Microsatellite instability and mutations in BRAF and KRAS are significant predictors of disseminated disease in colon cancer

Prediction of human drug-induced liver injury (DILI) in relation to oral doses and blood concentrations

Profiling cancer testis antigens in non-small-cell lung cancer

Prognostic Impact of Tumor Cell Programmed Death Ligand 1 Expression and Immune Cell Infiltration in NSCLC

Prognostic impact of COX-2 in non-small cell lung cancer: a comprehensive compartment-specific evaluation of tumor and stromal cell expression

Prognostic influence of pre-operative C-reactive protein in node-negative breast cancer patients

Quantification of normal cell fraction and copy number neutral LOH in clinical lung cancer samples using SNP array data

RANK rewires energy homeostasis in lung cancer cells and drives primary lung cancer.

Reaching the limits of prognostication in non-small cell lung cancer: an optimized biomarker panel fails to outperform clinical parameters.

Relevance of the incubation period in cytotoxicity testing with primary human hepatocytes

Road Map for Development of Stem Cell-Based Alternative Test Methods

The Human Endometrium-Specific Proteome Defined by Transcriptomics and Antibody-Based Profiling

The human gastrointestinal tract-specific transcriptome and proteome as defined by RNA sequencing and antibody-based profiling

The human liver-specific proteome defined by transcriptomics and antibody-based profiling

The kidney transcriptome and proteome defined by transcriptomics and antibody-based profiling

The lung-specific proteome defined by integration of transcriptomics and antibody-based profiling.

The prognostic relevance of tumour-infiltrating plasma cells and immunoglobulin kappa C indicates an important role of the humoral immune response in non-small cell lung cancer

The protein kinase LKB1 negatively regulates bone morphogenetic protein receptor signaling

The transcriptomic and proteomic landscapes of bone marrow and secondary lymphoid tissues

Toxicity of fluoride: critical evaluation of evidence for human developmental neurotoxicity in epidemiological studies, animal experiments and in vitro analyses

Toxicogenomics directory of chemically exposed human hepatocytes

Toxicogenomics directory of rat hepatotoxicants in vivo and in cultivated hepatocytes