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List of works by Justin Reese

Analysis of archived residual newborn screening blood spots after whole genome amplification

scientific article published on 13 August 2015

Association of post-COVID phenotypic manifestations with new-onset psychiatric disease

scientific article published in 2024

BAYSIC: a Bayesian method for combining sets of genome variants with improved specificity and sensitivity.

scientific article

Bovine Genome Database: integrated tools for genome annotation and discovery

scientific article

Bovine Genome Database: supporting community annotation and analysis of the Bos taurus genome

scientific article (publication date: 19 November 2010)

Characterization of the Asian Citrus Psyllid Transcriptome.

scientific article published on January 2014

Characterizing Long COVID: Deep Phenotype of a Complex Condition

scientific article published on 25 November 2021

Community annotation: procedures, protocols, and supporting tools.

scientific article published on 25 October 2006

Computational and transcriptional evidence for microRNAs in the honey bee genome

scientific article published on January 2007

Creating a honey bee consensus gene set

scientific article published on January 2007

Draft genome of the globally widespread and invasive Argentine ant (Linepithema humile) ⬇️

scientific article

Draft genome of the red harvester ant Pogonomyrmex barbatus

scientific article

Explainable Machine Learning for Early Assessment of COVID-19 Risk Prediction in Emergency Departments

scientific article published in 2020

Finding the missing honey bee genes: lessons learned from a genome upgrade

scientific article

Functional and evolutionary insights from the genomes of three parasitoid Nasonia species

scientific article

Genome sequences of the human body louse and its primary endosymbiont provide insights into the permanent parasitic lifestyle

scientific article

Genome-wide analysis of ARS (autonomously replicating sequence) binding factor 1 (Abf1p)-mediated transcriptional regulation in Saccharomyces cerevisiae

scientific article

Hymenoptera Genome Database: integrated community resources for insect species of the order Hymenoptera

scientific article

Interpretable Clinical Genomics with a Likelihood Ratio Paradigm

scientific article published on 29 July 2020

KG-COVID-19: a framework to produce customized knowledge graphs for COVID-19 response

scientific article published on 18 August 2020

KG-COVID-19: a framework to produce customized knowledge graphs for COVID-19 response

scientific article published on 9 November 2020

KG-Hub -- Building and Exchanging Biological Knowledge Graphs

preprint published in 2023

KG-Hub—building and exchanging biological knowledge graphs

scientific article published in 2023

Manual superscaffolding of honey bee (Apis mellifera) chromosomes 12-16: implications for the draft genome assembly version 4, gene annotation, and chromosome structure

scientific article published on 16 May 2007

Molecular traces of alternative social organization in a termite genome.

scientific article

NSAID use and clinical outcomes in COVID-19 patients: a 38-center retrospective cohort study

scientific article published on 15 May 2022

Social insect genomes exhibit dramatic evolution in gene composition and regulation while preserving regulatory features linked to sociality

scientific article published on May 2013

Structured Prompt Interrogation and Recursive Extraction of Semantics (SPIRES): a method for populating knowledge bases using zero-shot learning

scientific article published on 21 February 2024

Supervised learning with word embeddings derived from PubMed captures latent knowledge about protein kinases and cancer

scientific article published on 08 December 2021

Survey of endosymbionts in the Diaphorina citri metagenome and assembly of a Wolbachia wDi draft genome

scientific article

SvAnna: efficient and accurate pathogenicity prediction of coding and regulatory structural variants in long-read genome sequencing

scientific article published on 28 April 2022

The Human Phenotype Ontology in 2024: phenotypes around the world

scientific article published in 2023

The Hymenoptera Genome Database

scholarly article by Monica Munoz-Torres et al published 5 November 2010 in Nature Precedings

The Hymenoptera Genome Database

scholarly article by Monica Munoz-Torres et al published 5 November 2010 in Nature Precedings

The Monarch Initiative in 2019: an integrative data and analytic platform connecting phenotypes to genotypes across species

scientific article published on 01 January 2020

The Monarch Initiative in 2024: an analytic platform integrating phenotypes, genes and diseases across species

The genome of the model beetle and pest Tribolium castaneum

scientific article

The genome of the sea urchin Strongylocentrotus purpuratus

scientific article

The genome sequence of taurine cattle: a window to ruminant biology and evolution

scientific article

The genome sequence of the leaf-cutter ant Atta cephalotes reveals insights into its obligate symbiotic lifestyle

scientific article

Transcriptomic and functional resources for the small hive beetle Aethina tumida, a worldwide parasite of honey bees

scientific article published on 2 July 2016

Web Apollo: a web-based genomic annotation editing platform

scientific article (publication date: 30 August 2013)

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