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List of works by Justin Reese

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The genome of the model beetle and pest Tribolium castaneum

scientific article
The genome sequence of taurine cattle: a window to ruminant biology and evolution

scientific article
The genome of the sea urchin Strongylocentrotus purpuratus

scientific article
Functional and evolutionary insights from the genomes of three parasitoid Nasonia species

scientific article
Genome sequences of the human body louse and its primary endosymbiont provide insights into the permanent parasitic lifestyle

scientific article
Creating a honey bee consensus gene set

scientific article published on January 2007
Web Apollo: a web-based genomic annotation editing platform

scientific article (publication date: 30 August 2013)
Draft genome of the globally widespread and invasive Argentine ant (Linepithema humile)

scientific article
Finding the missing honey bee genes: lessons learned from a genome upgrade

scientific article
The genome sequence of the leaf-cutter ant Atta cephalotes reveals insights into its obligate symbiotic lifestyle

scientific article
Draft genome of the red harvester ant Pogonomyrmex barbatus

scientific article
Molecular traces of alternative social organization in a termite genome.

scientific article
Social insect genomes exhibit dramatic evolution in gene composition and regulation while preserving regulatory features linked to sociality

scientific article published on May 2013
Hymenoptera Genome Database: integrated community resources for insect species of the order Hymenoptera

scientific article
Computational and transcriptional evidence for microRNAs in the honey bee genome

scientific article published on January 2007
Genome-wide analysis of ARS (autonomously replicating sequence) binding factor 1 (Abf1p)-mediated transcriptional regulation in Saccharomyces cerevisiae

scientific article
Community annotation: procedures, protocols, and supporting tools.

scientific article published on 25 October 2006
BAYSIC: a Bayesian method for combining sets of genome variants with improved specificity and sensitivity.

scientific article
Survey of endosymbionts in the Diaphorina citri metagenome and assembly of a Wolbachia wDi draft genome

scientific article
Characterization of the Asian Citrus Psyllid Transcriptome.

scientific article published on January 2014
Bovine Genome Database: integrated tools for genome annotation and discovery

scientific article
Bovine Genome Database: supporting community annotation and analysis of the Bos taurus genome

scientific article (publication date: 19 November 2010)
Transcriptomic and functional resources for the small hive beetle Aethina tumida, a worldwide parasite of honey bees

scientific article published on 2 July 2016
Manual superscaffolding of honey bee (Apis mellifera) chromosomes 12-16: implications for the draft genome assembly version 4, gene annotation, and chromosome structure

scientific article published on 16 May 2007
Analysis of archived residual newborn screening blood spots after whole genome amplification

scientific article published on 13 August 2015
The Monarch Initiative in 2019: an integrative data and analytic platform connecting phenotypes to genotypes across species

scientific article published on 01 January 2020
KG-COVID-19: a framework to produce customized knowledge graphs for COVID-19 response

scientific article published on 9 November 2020
The Hymenoptera Genome Database

scholarly article by Monica Munoz-Torres et al published 5 November 2010 in Nature Precedings
The Human Phenotype Ontology in 2024: phenotypes around the world

scientific article published in 2023
Phenopacket-tools: Building and validating GA4GH Phenopackets

scientific article published on 17 May 2023
KG-Hub—building and exchanging biological knowledge graphs

scientific article published in 2023
KG-COVID-19: a framework to produce customized knowledge graphs for COVID-19 response

scientific article published on 18 August 2020
KG-Hub -- Building and Exchanging Biological Knowledge Graphs

preprint published in 2023
Ecolink: Towards a Knowledge Graph Schema for Complex Environmental Systems

NSAID use and clinical outcomes in COVID-19 patients: a 38-center retrospective cohort study

scientific article published on 15 May 2022
SvAnna: efficient and accurate pathogenicity prediction of coding and regulatory structural variants in long-read genome sequencing

scientific article published on 28 April 2022
The Monarch Initiative in 2024: an analytic platform integrating phenotypes, genes and diseases across species

Supervised learning with word embeddings derived from PubMed captures latent knowledge about protein kinases and cancer

scientific article published on 08 December 2021
Structured Prompt Interrogation and Recursive Extraction of Semantics (SPIRES): a method for populating knowledge bases using zero-shot learning

scientific article published on 21 February 2024
The Hymenoptera Genome Database

scholarly article by Monica Munoz-Torres et al published 5 November 2010 in Nature Precedings
Explainable Machine Learning for Early Assessment of COVID-19 Risk Prediction in Emergency Departments

scientific article published in 2020
KG-Microbe - Building Modular and Scalable Knowledge Graphs for Microbiome and Microbial Sciences

Characterizing Long COVID: Deep Phenotype of a Complex Condition

scientific article published on 25 November 2021
Characterizing Long COVID: Deep Phenotype of a Complex Condition

Interpretable Clinical Genomics with a Likelihood Ratio Paradigm

scientific article published on 29 July 2020
Association of post-COVID phenotypic manifestations with new-onset psychiatric disease

scientific article published in 2024

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