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List of works by Ömer H. Yilmaz

A Challenge from Teaching to Social Movement: Bediüzzaman Said Nursi’s Struggles for Modification in Turkey

A Platinum(IV) Prodrug - Perfluoroaryl Macrocyclic Peptide Conjugate Enhances Platinum Uptake in the Brain

scientific article published on 15 May 2020

A Wnt-producing niche drives proliferative potential and progression in lung adenocarcinoma.

scientific article published on 10 May 2017

A novel histological index for evaluation of environmental enteric dysfunction identifies geographic-specific features of enteropathy among children with suboptimal growth

scientific article published on 13 January 2020

A rare cause of acute abdominal pain: primary torsion of omentum majus.

scientific article

A rare type of peripheral nerve sheath tumor: radial nerve schwannoma

scientific article

A single-cell survey of the small intestinal epithelium

scientific article published on 8 November 2017

Abatacept: a new treatment option for refractory adult autoimmune enteropathy

scientific article published in January 2014

Abdominal pain due to rectus abdominis muscle haematoma associated with anticoagulant therapy

scientific article published on 01 June 2010

Abdominal perfusion computed tomography

scientific article

Agrin in the Muscularis Mucosa Serves as a Biomarker Distinguishing Hyperplastic Polyps from Sessile Serrated Lesions

scientific article published on 18 December 2019

Aldehyde dehydrogenase 1a1 is dispensable for stem cell function in the mouse hematopoietic and nervous systems

scientific journal article

Aneuploidy increases resistance to chemotherapeutics by antagonizing cell division

scientific article published on 17 November 2020

Anti TNF-α therapy might be responsible for an increased incidence of varicocele in patients with ankylosing spondylitis.

scientific article published in January 2014

Antibiotic treatment is superior to ursodeoxycholic acid on total parenteral nutrition associated hepatic dysfunction

scientific article published on 21 February 2010

Assessing the Effect of Leptin on Liver Damage in Case of Hepatic Injury Associated with Paracetamol Poisoning

scientific article

Assessment of the efficacy of absorbable adhesion barriers on dissection in esophagus operations

scientific article published on 11 December 2006

Association of Gleason score with PSA Values and Serum Testosterone Levels Measured Prior To Prostate Biopsy

scientific article published on 01 April 2020

Atg16L1 T300A variant decreases selective autophagy resulting in altered cytokine signaling and decreased antibacterial defense

scientific article

Atg16l1 is required for autophagy in intestinal epithelial cells and protection of mice from Salmonella infection

scientific article published on 21 August 2013

Attention-deficit hyperactivity disorder in patients with premature ejaculation: a pilot study.

scientific article published on 22 September 2012

Author Correction: High-fat diet enhances stemness and tumorigenicity of intestinal progenitors

scientific article published in Nature

Author Reply to Letter-to-the-Editor on: Providing a fossa navicularis in reconstruction of hypospadias

scientific article published on 18 December 2020

Bariatric Surgery Prior to Index Screening Colonoscopy Is Associated With a Decreased Rate of Colorectal Adenomas in Obese Individuals

scientific article

Bilateral traumatic globe luxation with optic nerve transection

scientific article

Biochemical analysis of urethral collagen content after tubularized incised plate urethroplasty: an experimental study in rabbits

scientific article

Breakthrough Moments: Genome Editing and Organoids

scientific article published on 01 June 2019

CD144 (VE-cadherin) is transiently expressed by fetal liver hematopoietic stem cells

scientific article published on 14 April 2005

CD150- cells are transiently reconstituting multipotent progenitors with little or no stem cell activity

scientific article published in April 2008

CRAD as a cytoskeletal tumour suppressor

scientific article published on 01 November 2018

CYP1A1 (Ile462Val), CYP1B1 (Ala119Ser and Val432Leu), GSTM1 (null), and GSTT1 (null) Polymorphisms and Bladder Cancer Risk in a Turkish Population ⬇️

scientific article published on January 1, 2013

Cables1is a tumor suppressor gene that regulates intestinal tumor progression inApcMinmice ⬇️

scientific article published on May 31, 2013

Can the systemic immune inflammation index be a predictor of bcg response in patients with high-risk non-muscle invasive bladder cancer?

scientific article published on 05 November 2020

Case of pituicytoma in childhood ⬇️

scientific article published on November 18, 2011

Cholangiolar pattern and albumin in situ hybridisation enable a diagnosis of intrahepatic cholangiocarcinoma

scientific article published on 17 August 2019

Co-existence of chronic renal failure, renal clear cell carcinoma, and Blau syndrome

article published in 2010

Coexistence of trifid and bifid median nerve in a patient with bilateral carpal tunnel syndrome

scientific article published on 01 January 2013

Colonoscopy-based colorectal cancer modeling in mice with CRISPR-Cas9 genome editing and organoid transplantation.

scientific article published on 4 January 2018

Colorectal cancer models for novel drug discovery

scientific article

Combination PI3K/MEK inhibition promotes tumor apoptosis and regression in PIK3CA wild-type, KRAS mutant colorectal cancer ⬇️

scientific article published on 24 February 2014

Comparing the therapeutic outcome of different alpha-blocker treatments for BPH in the same individuals

scientific article

Comprehensive Electrocardiographic Analysis of Lead Exposed Workers: An Arrhythmic Risk Assessment Study.

scientific article

Computed Tomography Perfusion Imaging for the Diagnosis of Hepatic Alveolar Echinococcosis.

scientific article

Correlation Between Residual Volume of Male Patients After Uroflowmetry and Random Residual Volume

scientific article published on 23 June 2017

Correlation of serum levels of soluble intercellular adhesion molecule-1 with disease activity in systemic lupus erythematosus

scientific article published on 01 January 2002

Corrigendum: In vivo genome editing and organoid transplantation models of colorectal cancer and metastasis

scientific article published in December 2017

Covid-19 Threat in Patients with High-Risk Non-Muscle Invasive Bladder Cancer Receiving Intravesical BCG Therapy

scientific article published on 16 October 2020

Cross-Sectional Analysis of Penile Length in Males 13 to 15 Years Old According to Pubertal Development Stages ⬇️

scientific article published on August 16, 2012

Cystic papillary pattern in pancreatic ductal adenocarcinoma: a heretofore undescribed morphologic pattern that mimics intraductal papillary mucinous carcinoma

scientific article published on May 2012

DNA Intercalation Facilitates Efficient DNA-Targeted Covalent Binding of Phenanthriplatin

scientific article published on 17 January 2019

Data on ultrabright fluorescent cellulose acetate nanoparticles for imaging tumors through systemic and topical applications

scientific article published on 18 December 2018

Demographic and clinicopathological characteristics of nonalcoholic fatty liver disease in the East-Southeastern Anatolia regions in Turkey

scientific article

Depletion of Rictor, an essential protein component of mTORC2, decreases male lifespan

scientific article (publication date: October 2014)

Dietary Regulation of Adult Stem Cells.

scientific article

Dietary and metabolic control of stem cell function in physiology and cancer

scientific article published on March 2014

Dietary regulation of the origins of cancer

scientific article published on 01 August 2018

Dissecting cell type-specific metabolism in pancreatic ductal adenocarcinoma

scientific article published on 10 July 2020

Does an asymmetric lobe in digital rectal examination include any risk for prostate cancer? results of 1495 biopsies

scientific article

Does enthesopathy relate to M694V gene mutation in patients with Familial Mediterranean fever? ⬇️

scientific article published on June 29, 2013

Does high-pressure carbon dioxide insufflation facilitate mucosal dissection in transanal endorectal pull-through? A rabbit model ⬇️

scientific article published on 09 October 2003

Early renal parenchymal histological changes in an experimental model of vesico-ureteral reflux and the role of apoptosis

scientific article published in January 2008

Effect of adhesion barrier (Interceed TC7) on two-stage orchidopexy operation

scientific article

Effects of the myeloperoxidase 463 gene polymorphisms on development of atrophy in H pylori infected or noninfected gastroduodenal disease

scientific article

Enhanced purification of fetal liver hematopoietic stem cells using SLAM family receptors

scientific article published on 28 March 2006

Enhancing chemotherapy response through augmented synthetic lethality by co-targeting nucleotide excision repair and cell-cycle checkpoints

scientific article published on 17 August 2020

Epidemiologic study of urolithiasis in seven countries of South-Eastern Europe: S.E.G.U.R. 1 study.

scientific article

Epithelial NOTCH Signaling Rewires the Tumor Microenvironment of Colorectal Cancer to Drive Poor-Prognosis Subtypes and Metastasis

scientific article published on 01 September 2019

Esophageal foreign bodies: analysis of 188 cases

scientific article published in May 2009

Evaluation of the Impact of Shock Wave Lithotripsy on Kidneys Using a New Marker: How Do Neutrophil Gelatinese-associated Lypocalin Values Change After Shock Wave Lithotripsy? ⬇️

scientific article published on April 13, 2012

Evaluation of the relation between interstitial cells of cajal (CD117) and serotonin receptor (5HT-3A) with postfundoplication dysphagia

scientific article published on 10 December 2014

FAOund the Link: Phospholipid Remodeling and Intestinal Stem Cell Growth and Tumorigenesis

scientific article published in February 2018

Fasting Activates Fatty Acid Oxidation to Enhance Intestinal Stem Cell Function during Homeostasis and Aging

scientific article published on 01 May 2018

Fasting-Mimicking Diet Promotes Ngn3-Driven β-Cell Regeneration to Reverse Diabetes

scientific article published in February 2017

From 3D Organoids back to 2D Enteroids

scientific article published on 01 March 2018

Genetic editing of colonic organoids provides a molecularly distinct and orthotopic preclinical model of serrated carcinogenesis.

scientific article published on 17 April 2018

Giant mesenteric cyst can present as pseudoascites with raised Ca125

scientific article published on 01 December 2009

Glutathione peroxidase, glutathione reductase, Cu-Zn superoxide dismutase activities, glutathione, nitric oxide, and malondialdehyde concentrations in serum of patients with chronic lymphocytic leukemia

scientific article published in December 2003

Gut organoids: mini-tissues in culture to study intestinal physiology and disease

scientific article published on 19 June 2019

Gut-Liver Physiomimetics Reveal Paradoxical Modulation of IBD-Related Inflammation by Short-Chain Fatty Acids

scientific article published on 18 March 2020

Heterogeneity in signaling pathways of gastroenteropancreatic neuroendocrine tumors: a critical look at notch signaling pathway ⬇️

scientific article published on August 24, 2012

High fat diet and stem cells: Linking diet to intestinal tumor formation

scientific article published on 20 April 2016

High-fat diet enhances stemness and tumorigenicity of intestinal progenitors

scientific article published on March 2016

High-fat diet in a mouse insulin-resistant model induces widespread rewiring of the phosphotyrosine signaling network

scientific article published on 01 August 2019

IGFBP3 and T1D: Systemic Factors in Colonic Stem Cell Function and Diabetic Enteropathy

scientific article published on 01 October 2015

In vivo genome editing and organoid transplantation models of colorectal cancer and metastasis

scientific article

Intestinal colonization by Candida albicans alters inflammatory responses in Bruton's tyrosine kinase-deficient mice

scientific article

Intestinal tuberculosis and secondary liver abscess

scientific article published on 01 October 2006

Intrahepatic portal vein aneurysm in an asymptomatic patient

scientific article published on 01 April 2010

Investigation of the veins in patients with Behçet’s disease with no known vascular event by Doppler ultrasonography ⬇️

scientific article published on October 28, 2010

Is perforated marginal ulcer after the surgery of gastroduodenal ulcer associated with inadequate treatment for Helicobacter pylori eradication?

scientific article published on 17 March 2007

Is primary adult hypospadiatic prepuce different from healthy prepuce in terms of microvascular density and androgen-estrogen-progesterone receptors?

scientific article published on 28 December 2020

Is there any association of COVID-19 with Testicular Pain and Epididymo-orchitis

scientific article published on 16 October 2020

Isolated cerebellar damage caused by carbon monoxide intoxication

scientific article

Ketone Body Signaling Mediates Intestinal Stem Cell Homeostasis and Adaptation to Diet

scientific article published on 01 August 2019

Kidney stone and urinary bladder telangiectasia in a patient with TAR syndrome.

scientific article

Live cell tagging tracking and isolation for spatial transcriptomics using photoactivatable cell dyes

scientific article published on 17 August 2021

Long-term effect of pentoxifylline and NG-nitro-L-arginine methyl ester on testicular function in spermatic artery ligation

scientific article published in January 2006

Low-Carbohydrate Diet Score and Macronutrient Intake in Relation to Survival After Colorectal Cancer Diagnosis

scientific article published on 01 November 2018

MCT1-mediated transport of a toxic molecule is an effective strategy for targeting glycolytic tumors

scientific article

MRI follow up of intracranial endodermal cysts

scientific article published on 19 April 2011

MYC promotes tryptophan uptake and metabolism by the kynurenine pathway in colon cancer

scientific article published on 15 August 2019

Metabolic Teamwork in the Stem Cell Niche

scientific article published on May 2017

Mex3a Marks a Slowly Dividing Subpopulation of Lgr5+ Intestinal Stem Cells

scientific article published on 8 March 2017

Molecular Pathways: Dietary Regulation of Stemness and Tumor Initiation by the PPAR-δ Pathway

scientific article

Mule Regulates the Intestinal Stem Cell Niche via the Wnt Pathway and Targets EphB3 for Proteasomal and Lysosomal Degradation

scientific article published on 11 May 2016

Notum produced by Paneth cells attenuates regeneration of aged intestinal epithelium

scientific article published on 10 July 2019

Nutritional Control of Intestinal Stem Cells in Homeostasis and Tumorigenesis

scientific article published on 01 December 2020

Nutritional Regulation of Intestinal Stem Cells

scientific article published on 23 May 2018

Optical data packet synchronization and multiplexing using a tunable optical delay based on wavelength conversion and inter-channel chromatic dispersion

scientific article

Our urethrocutaneous fistula repair results in adults after hypospadias surgery

scientific article published on 21 October 2017

Oxidative stress and enzymatic antioxidant status in patients with nonalcoholic steatohepatitis

scientific article published in January 2004

PKM2 is not required for colon cancer initiated by APC loss.

scientific article published on 30 November 2017

Pathology and Genetics of Pancreatic Neoplasms

scientific article published on December 2012

Perfusion CT evaluation in experimentally induced testicular torsion

scientific article published on October 2009

Perfusion CT evaluation in experimentally induced testicular torsion

scientific article

Perfusion computed tomography could be a new tool for single-session imaging of ureteric obstructive pathology: an experimental study in rats

scientific article published in October 2009

Perioperative Indices Predicting Fever Following Percutaneus Nephrolithotomy

scientific article published on 01 December 2020

Persistence of leukemia-initiating cells in a conditional knockin model of an imatinib-responsive myeloproliferative disorder

scientific article published on August 2009

Persistent left superior vena cava draining to the left atrium: A case report and review of the literature ⬇️

scientific article published on October 1, 2012

Peutz-Jeghers syndrome: a critical look at colonic Peutz-Jeghers polyps

scientific article published on 19 April 2013

Portal venous aneurysm and liver cirrhosis

scientific article published on 01 December 2006

Postshockwave lithotripsy outcome evaluation in ureteral stones: comparison between noncontrast computed tomography and plain abdominal radiography

scientific article published on 2 March 2012

Pten dependence distinguishes haematopoietic stem cells from leukaemia-initiating cells

scientific article (publication date: 25 May 2006)

Pten-null tumors cohabiting the same lung display differential AKT activation and sensitivity to dietary restriction.

scientific article published on 29 May 2013

Recurrent atretic parietal cephalocele in adult and radiological findings

scientific article published on April 2012

Regenerative Reprogramming of the Intestinal Stem Cell State via Hippo Signaling Suppresses Metastatic Colorectal Cancer

scientific article published on 24 July 2020

Region-Specific Proteome Changes of the Intestinal Epithelium during Aging and Dietary Restriction

scientific article published on 01 April 2020

SLAM family markers are conserved among hematopoietic stem cells from old and reconstituted mice and markedly increase their purity

scientific article published on 11 October 2005

SLAM family receptors distinguish hematopoietic stem and progenitor cells and reveal endothelial niches for stem cells

scientific article (publication date: July 2005)

Safety and efficacy of PNL vs RIRS in the management of stones located in horseshoe kidneys: A critical comparative evaluation

scientific article published on 30 September 2018

Sarcoidosis is a rare cause of infertility: A case report

scientific article published on 01 November 2019

Screening for modulators of the cellular composition of gut epithelia via organoid models of intestinal stem cell differentiation

scientific article published on 21 March 2022

Serum levels of acute phase proteins in patients with nonalcoholic steatohepatitis

scientific article published on 01 March 2003

Serum lipids, lipoproteins and apolipoproteins levels in patients with nonalcoholic steatohepatitis.

scientific article published in August 2003

Serum ubiquitin levels in patients with nonalcoholic steatohepatitis.

scientific article published on May 2003

Sonic hedgehog, TBX18, and TSHZ3 proteins involved in pyeloureteral motility development are overexpressed in ureteropelvic junction obstruction. An immunohistochemical, histopathological, and clinical comparative study.

scientific article

Spatial differences in hematopoiesis but not in stem cells indicate a lack of regional patterning in definitive hematopoietic stem cells

scientific article published in July 2005

Starving leukemia to induce differentiation

scientific article published on January 2017

Strategies for Measuring Induction of Fatty Acid Oxidation in Intestinal Stem and Progenitor Cells

scientific article published on 01 January 2020

Study of Environmental Enteropathy and Malnutrition (SEEM) in Pakistan: protocols for biopsy based biomarker discovery and validation

scientific article published on 22 July 2019

T Helper Cell Cytokines Modulate Intestinal Stem Cell Renewal and Differentiation

scientific article published on 01 November 2018

TUBULARIZED RECONSTRUCTED PLATE URETHROPLASTY: AN ALTERNATIVE TECHNIQUE FOR DISTAL HYPOSPADIAS REPAIR

scientific article published on 17 October 2020

The Clinical Significance of Seminoma Component in Testicular Mixed Germ Cell Tumour

scientific article published on 02 April 2020

The DNA-sensing AIM2 inflammasome controls radiation-induced cell death and tissue injury.

scientific article

The Effect of Tunica Albuginea Incision on Testicular Tissue After Detorsion in the Experimental Model of Testicular Torsion

scientific article published on 17 December 2017

The PI-3kinase pathway in hematopoietic stem cells and leukemia-initiating cells: a mechanistic difference between normal and cancer stem cells

scientific article published on 2 April 2008

The effect of circumcision status on periurethral and glanular bacterial flora

scientific article published on 01 January 2004

The effect of geometric isomerism on the anticancer activity of the monofunctional platinum complex trans-[Pt(NH3)2(phenanthridine)Cl]NO3.

scientific article published on 27 February 2018

The effect of spermatic vessel ligation on testicular nitric oxide levels and germ cell-specific apoptosis in rat testis

scientific article published on 11 January 2005

The histone demethylase UTX regulates the lineage-specific epigenetic program of invariant natural killer T cells.

scientific article published on 19 December 2016

The importance of PSA-Density in active surveillance for prostate cancer

scientific article published on 24 June 2020

The influence of hormonal treatment with beta-human chorionic gonadotropin for cryptorchidism on future fertility in rats

scientific article published on 10 March 2015

The interrelations of radiologic findings and mechanical ventilation in community acquired pneumonia patients admitted to the intensive care unit: a multicentre retrospective study

scientific article published on 08 January 2014

The relationship between posterior septum deviation and depth of maxillopalatal arch ⬇️

scientific article published on October 16, 2012

Thoracic perforations-surgical techniques

scientific article published in February 2018

Transcriptome-wide <i>In Vitro</i> Effects of Aspirin on Patient-derived Normal Colon Organoids

scientific article published on 13 August 2021

Transthoracic biopsy of lung masses: Non technical factors affecting complication occurrence

scientific article published on 2 March 2015

Ulnar artery aneurysm in a patient with Behçet's disease.

scientific article

Ultrabright fluorescent cellulose acetate nanoparticles for imaging tumors through systemic and topical applications

scientific article published on 23 December 2018

Usefulness of serum pepsinogen levels as a screening test for atrophic gastritis and gastric cancer

scientific article

Varicocele and epididymitis in Behcet disease

scientific article published on 01 July 2011

ZFHX4 interacts with the NuRD core member CHD4 and regulates the glioblastoma tumor-initiating cell state

scientific journal article

mTOR activation induces tumor suppressors that inhibit leukemogenesis and deplete hematopoietic stem cells after Pten deletion.

scientific article

mTORC1 in the Paneth cell niche couples intestinal stem-cell function to calorie intake.

scientific article

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