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List of works by Jay W Shin

A predictive computational framework for direct reprogramming between human cell types

scientific article

A promoter-level mammalian expression atlas

scientific article

A transient disruption of fibroblastic transcriptional regulatory network facilitates trans-differentiation

scientific article published on 10 July 2014

Alternative transcription of a shorter, non-anti-angiogenic thrombospondin-2 variant in cancer-associated blood vessels.

scientific article published on 22 February 2018

An era of single-cell genomics consortia

scientific article published on 15 September 2020

An exquisite cross-control mechanism among endothelial cell fate regulators directs the plasticity and heterogeneity of lymphatic endothelial cells

scientific article

An integrated expression atlas of miRNAs and their promoters in human and mouse.

scientific article

Analysis of a novel highly metastatic melanoma cell line identifies osteopontin as a new lymphangiogenic factor ⬇️

scientific article published on July 6, 2012

Batf2/Irf1 induces inflammatory responses in classically activated macrophages, lipopolysaccharides, and mycobacterial infection

scientific article

Brainstem Organoids From Human Pluripotent Stem Cells

scientific article published on 26 June 2020

Building a high-quality Human Cell Atlas ⬇️

journal article from 'Nature Biotechnology' published in 2021

C1 CAGE detects transcription start sites and enhancer activity at single-cell resolution

scientific article published in Nature Communications

CC Chemokine Ligand 2 and Leukemia Inhibitory Factor Cooperatively Promote Pluripotency in Mouse Induced Pluripotent Cells ⬇️

scientific article published on August 1, 2011

Comparison of CAGE and RNA-seq transcriptome profiling using clonally amplified and single-molecule next-generation sequencing

scientific article

CpG site-specific alteration of hydroxymethylcytosine to methylcytosine beyond DNA replication

scientific article published on 17 August 2012

DeepCAGE Transcriptomics Reveal an Important Role of the Transcription Factor MAFB in the Lymphatic Endothelium

scientific article published on 4 November 2015

DeepCAGE transcriptomics identify HOXD10 as a transcription factor regulating lymphatic endothelial responses to VEGF-C.

scientific article published on 19 May 2016

Development of the lymphatic vascular system: a mystery unravels

scientific article published in November 2004

Distinct transcriptional responses of lymphatic endothelial cells to VEGFR-3 and VEGFR-2 stimulation.

scientific article published on 29 August 2017

Establishment of single-cell screening system for the rapid identification of transcriptional modulators involved in direct cell reprogramming

scientific article published on 8 August 2012

FANTOM enters 20th year: expansion of transcriptomic atlases and functional annotation of non-coding RNAs

scientific article published on 19 November 2020

FANTOM5 CAGE profiles of human and mouse samples

scientific article published on 29 August 2017

Functional annotation of human long noncoding RNAs via molecular phenotyping

scientific article published on 27 July 2020

Identification of ZNF395 as a novel modulator of adipogenesis ⬇️

scientific article published on November 7, 2012

Inhibition of the transcription factor ROR-γ reduces pathogenic Th17 cells in acetylcholine receptor antibody positive myasthenia gravis

scientific article published on 12 December 2019

LETR1 is a lymphatic endothelial-specific lncRNA governing cell proliferation and migration through KLF4 and SEMA3C

scientific article published on 10 February 2021

Lymphatic reprogramming of blood vascular endothelium by Kaposi sarcoma–associated herpesvirus

Lymphatic-specific expression of dipeptidyl peptidase IV and its dual role in lymphatic endothelial function

scientific article

PAPD5-mediated 3' adenylation and subsequent degradation of miR-21 is disrupted in proliferative disease.

scientific article

Paradigm shifts in genomics through the FANTOM projects

scientific article published on 8 August 2015

Piperidine-4-carboxamide as a new scaffold for designing secretory glutaminyl cyclase inhibitors

scientific article published on 26 December 2020

Prox-1 promotes invasion of kaposiform hemangioendotheliomas

scientific article

Prox1 promotes lineage-specific expression of fibroblast growth factor (FGF) receptor-3 in lymphatic endothelium: a role for FGF signaling in lymphangiogenesis

scientific journal article

Reconstruction of Monocyte Transcriptional Regulatory Network Accompanies Monocytic Functions in Human Fibroblasts ⬇️

scientific article published on March 13, 2012

Recounting the FANTOM CAGEAssociated Transcriptome

scientific article published on 20 February 2020

Repositioning monocyte TFRN into fibroblasts

scientific article

SCPortalen: human and mouse single-cell centric database

scientific article published on 17 October 2017

Single-cell transcriptomes of fluorescent, ubiquitination-based cell cycle indicator cells

Single-cell transcriptomics reveals expansion of cytotoxic CD4 T cells in supercentenarians

scientific article published on 12 November 2019

Single-cell transcriptomics reveals multiple neuronal cell types in human midbrain-specific organoids

scientific article published on 31 July 2020

Temporal dynamics and transcriptional control using single-cell gene expression analysis

scientific article

The Human Cell Atlas

scientific article

The Human Cell Atlas

The Human Cell Atlas White Paper ⬇️

journal article from 'arXiv:1810.05192 [q-bio]' published in 2018

The Human Cell Atlas: Technical approaches and challenges

scientific article published on 28 October 2017

The essentiality of non-coding RNAs in cell reprogramming

scientific article published on 01 March 2017

Transcriptional profiling of VEGF-A and VEGF-C target genes in lymphatic endothelium reveals endothelial-specific molecule-1 as a novel mediator of lymphangiogenesis

scientific article published on 9 July 2008

Tumor lymphangiogenesis and metastasis to lymph nodes induced by cancer cell expression of podoplanin

scientific article

Widely Distributed Neurotensinergic Neurons in the Brainstem Regulate NREM Sleep in Mice

scientific article published on 06 February 2020

miR-31 functions as a negative regulator of lymphatic vascular lineage-specific differentiation in vitro and vascular development in vivo

scientific article

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