List of works - Dominik Gront

A new approach to prediction of short-range conformational propensities in proteins.

scientific article

A simple lattice model that exhibits a protein-like cooperative all-or-none folding transition

scientific article published on 01 July 2003

An Unprecedented Number of Cytochrome P450s Are Involved in Secondary Metabolism in Salinispora Species

scientific article published on 21 April 2022

Ancient Bacterial Class Alphaproteobacteria Cytochrome P450 Monooxygenases Can Be Found in Other Bacterial Species

scientific article published on 24 May 2021

Backbone building from quadrilaterals: a fast and accurate algorithm for protein backbone reconstruction from alpha carbon coordinates

scientific article

BioShell Threader: protein homology detection based on sequence profiles and secondary structure profiles

scientific article

BioShell--a package of tools for structural biology computations.

scientific article

BioShell-Threading: versatile Monte Carlo package for protein 3D threading.

scientific article

Biofunctionalisation of p-doped silicon with cytochrome c 553 minimises charge recombination and enhances photovoltaic performance of the all-solid-state photosystem I-based biophotoelectrode

scientific article published in 2017

Coarse-Grained Modeling of the Interplay between Secondary Structure Propensities and Protein Fold Assembly

scientific article published on 27 February 2018

Coarse-Grained Protein Models and Their Applications

scientific article

Coarse-Grained Protein Models in Structure Prediction

scientific article published in 2014

Combining coarse-grained protein models with replica-exchange all-atom molecular dynamics.

scientific article published on 10 May 2013

Comparative modeling without implicit sequence alignments

scientific article published on 27 July 2007

Comparison of α-Helix and β-Sheet Structure Adaptation to a Quantum Dot Geometry: Toward the Identification of an Optimal Motif for a Protein Nanoparticle Cover

scientific article published on 05 August 2019

Contrasting Health Effects of Bacteroidetes and Firmicutes Lies in Their Genomes: Analysis of P450s, Ferredoxins, and Secondary Metabolite Clusters

scientific article published on 2 May 2022

Diversification of Ferredoxins across Living Organisms

scientific article published on 30 September 2021

Exploring protein energy landscapes with hierarchical clustering.

scientific article

Fast and accurate methods for predicting short-range constraints in protein models

scientific article published on 15 April 2008

From Coarse-Grained to Atomic-Level Characterization of Protein Dynamics: Transition State for the Folding of B Domain of Protein A ⬇️

scientific article published on April 19, 2012

HCPM--program for hierarchical clustering of protein models

scientific article published on 19 April 2005

Improving thermal stability of thermophilic L-threonine aldolase from Thermotoga maritima.

scientific article published on 19 February 2015

Lifestyles Shape the Cytochrome P450 Repertoire of the Bacterial Phylum Proteobacteria

scientific article published on 22 May 2022

More P450s Are Involved in Secondary Metabolite Biosynthesis in Streptomyces Compared to Bacillus, Cyanobacteria, and Mycobacterium ⬇️

scientific article published on 07 July 2020

Optimization of profile-to-profile alignment parameters for one-dimensional threading

scientific article published on 25 June 2012

Protein Structure Prediction Using Coarse-Grained Models

scientific article published on 29 November 2018

Protein structure prediction by tempering spatial constraints.

scientific article

SURPASS Low-Resolution Coarse-Grained Protein Modeling

scientific article

T-Pile--a package for thermodynamic calculations for biomolecules

scientific article published on 17 May 2007

The crystal structure of the AF2331 protein from Archaeoglobus fulgidus DSM 4304 forms an unusual interdigitated dimer with a new type of alpha + beta fold.

scientific article

Towards the high-resolution protein structure prediction. Fast refinement of reduced models with all-atom force field.

scientific article

Type II restriction endonuclease R.Eco29kI is a member of the GIY-YIG nuclease superfamily

scientific article

Utility library for structural bioinformatics

scientific article

List of works by Dominik Gront

A new approach to prediction of short-range conformational propensities in proteins.

A simple lattice model that exhibits a protein-like cooperative all-or-none folding transition

An Unprecedented Number of Cytochrome P450s Are Involved in Secondary Metabolism in Salinispora Species

Ancient Bacterial Class Alphaproteobacteria Cytochrome P450 Monooxygenases Can Be Found in Other Bacterial Species

Backbone building from quadrilaterals: a fast and accurate algorithm for protein backbone reconstruction from alpha carbon coordinates

BioShell Threader: protein homology detection based on sequence profiles and secondary structure profiles

BioShell--a package of tools for structural biology computations.

BioShell-Threading: versatile Monte Carlo package for protein 3D threading.

Biofunctionalisation of p-doped silicon with cytochrome c 553 minimises charge recombination and enhances photovoltaic performance of the all-solid-state photosystem I-based biophotoelectrode

Coarse-Grained Modeling of the Interplay between Secondary Structure Propensities and Protein Fold Assembly

Coarse-Grained Protein Models and Their Applications

Coarse-Grained Protein Models in Structure Prediction

Combining coarse-grained protein models with replica-exchange all-atom molecular dynamics.

Comparative modeling without implicit sequence alignments

Comparison of α-Helix and β-Sheet Structure Adaptation to a Quantum Dot Geometry: Toward the Identification of an Optimal Motif for a Protein Nanoparticle Cover

Contrasting Health Effects of Bacteroidetes and Firmicutes Lies in Their Genomes: Analysis of P450s, Ferredoxins, and Secondary Metabolite Clusters

Diversification of Ferredoxins across Living Organisms

Exploring protein energy landscapes with hierarchical clustering.

Fast and accurate methods for predicting short-range constraints in protein models

From Coarse-Grained to Atomic-Level Characterization of Protein Dynamics: Transition State for the Folding of B Domain of Protein A ⬇️

HCPM--program for hierarchical clustering of protein models

Improving thermal stability of thermophilic L-threonine aldolase from Thermotoga maritima.

Lifestyles Shape the Cytochrome P450 Repertoire of the Bacterial Phylum Proteobacteria

More P450s Are Involved in Secondary Metabolite Biosynthesis in Streptomyces Compared to Bacillus, Cyanobacteria, and Mycobacterium ⬇️

Optimization of profile-to-profile alignment parameters for one-dimensional threading

Protein Structure Prediction Using Coarse-Grained Models

Protein structure prediction by tempering spatial constraints.

SURPASS Low-Resolution Coarse-Grained Protein Modeling

T-Pile--a package for thermodynamic calculations for biomolecules

The crystal structure of the AF2331 protein from Archaeoglobus fulgidus DSM 4304 forms an unusual interdigitated dimer with a new type of alpha + beta fold.

Towards the high-resolution protein structure prediction. Fast refinement of reduced models with all-atom force field.

Type II restriction endonuclease R.Eco29kI is a member of the GIY-YIG nuclease superfamily

Utility library for structural bioinformatics