List of works - Mattias de Hollander

A comparison of rpoB and 16S rRNA as markers in pyrosequencing studies of bacterial diversity

scientific article

Acidobacterial community responses to agricultural management of soybean in Amazon forest soils.

scientific article published on 19 October 2012

CGtag: complete genomics toolkit and annotation in a cloud-based Galaxy

scientific article published on 24 January 2014

Can subtle changes in gene expression be consistently detected with different microarray platforms?

scientific article

Context dependency and saturating effects of loss of rare soil microbes on plant productivity

scientific article published on 30 June 2015

Cultivation-independent and cultivation-dependent metagenomes reveal genetic and enzymatic potential of microbial community involved in the degradation of a complex microbial polymer

scientific article published on 01 June 2020

Deciphering rhizosphere microbiome assembly of wild and modern common bean (Phaseolus vulgaris) in native and agricultural soils from Colombia

scientific article published on 14 August 2019

Detecting macroecological patterns in bacterial communities across independent studies of global soils.

scientific article published on 20 November 2017

Differential responses of soil bacteria, fungi, archaea and protists to plant species richness and plant functional group identity

scientific article

Exploring soil microbial 16S rRNA sequence data to increase carbon yield and nitrogen efficiency of a bioenergy crop

Functional traits dominate the diversity-related selection of bacterial communities in the rhizosphere

scientific article published on 2 August 2016

Fungal diversity and potential tree pathogens in decaying logs and stumps

scientific article published in 2017

Impact of long-term N, P, K, and NPK fertilization on the composition and potential functions of the bacterial community in grassland soil

scientific article published on 21 August 2014

Influence of resistance breeding in common bean on rhizosphere microbiome composition and function

scientific article

Latitudinal variation in soil nematode communities under climate warming-related range-expanding and native plants

scientific article published on 20 May 2019

Linking rhizosphere microbiome composition of wild and domesticated Phaseolus vulgaris to genotypic and root phenotypic traits.

scientific article published on 6 June 2017

Methanogens predominate in natural corrosion protective layers on metal sheet piles.

scientific article published on 19 September 2017

Mitochondrial proteome evolution and genetic disease.

scientific article published on 26 March 2009

Pathogen-induced activation of disease-suppressive functions in the endophytic root microbiome

scientific article published on 01 November 2019

PhyloFunDB: A Pipeline to Create and Update Functional Gene Taxonomic Databases

scientific article published in 2022

Plant and soil fungal but not soil bacterial communities are linked in long-term fertilized grassland

scientific article

Quantitative comparison between the rhizosphere effect of Arabidopsis thaliana and co-occurring plant species with a longer life history

scientific article published on 08 July 2020

Shifts in rhizosphere fungal community during secondary succession following abandonment from agriculture

scientific article

Soil Microbiome Is More Heterogeneous in Organic Than in Conventional Farming System

scientific article (publication date: 2016)

Soil microbiome responses to the short-term effects of Amazonian deforestation.

scientific article published on 21 April 2015

Soil networks become more connected and take up more carbon as nature restoration progresses.

scientific article

Soil-borne microbiome: linking diversity to function

scientific article published on 14 January 2015

Structural and functional variation in soil fungal communities associated with litter bags containing maize leaf

scientific article

Successive DNA extractions improve characterization of soil microbial communities

scientific article published on February 2017

Testing potential effects of maize expressing the Bacillus thuringiensis Cry1Ab endotoxin (Bt maize) on mycorrhizal fungal communities via DNA- and RNA-based pyrosequencing and molecular fingerprinting.

scientific article

The wild side of plant microbiomes

article

Tracking fungal community responses to maize plants by DNA- and RNA-based pyrosequencing

scientific article

List of works by Mattias de Hollander

A comparison of rpoB and 16S rRNA as markers in pyrosequencing studies of bacterial diversity

Acidobacterial community responses to agricultural management of soybean in Amazon forest soils.

CGtag: complete genomics toolkit and annotation in a cloud-based Galaxy

Can subtle changes in gene expression be consistently detected with different microarray platforms?

Context dependency and saturating effects of loss of rare soil microbes on plant productivity

Cultivation-independent and cultivation-dependent metagenomes reveal genetic and enzymatic potential of microbial community involved in the degradation of a complex microbial polymer

Deciphering rhizosphere microbiome assembly of wild and modern common bean (Phaseolus vulgaris) in native and agricultural soils from Colombia

Detecting macroecological patterns in bacterial communities across independent studies of global soils.

Differential responses of soil bacteria, fungi, archaea and protists to plant species richness and plant functional group identity

Exploring soil microbial 16S rRNA sequence data to increase carbon yield and nitrogen efficiency of a bioenergy crop

Functional traits dominate the diversity-related selection of bacterial communities in the rhizosphere

Fungal diversity and potential tree pathogens in decaying logs and stumps

Impact of long-term N, P, K, and NPK fertilization on the composition and potential functions of the bacterial community in grassland soil

Influence of resistance breeding in common bean on rhizosphere microbiome composition and function

Latitudinal variation in soil nematode communities under climate warming-related range-expanding and native plants

Linking rhizosphere microbiome composition of wild and domesticated Phaseolus vulgaris to genotypic and root phenotypic traits.

Methanogens predominate in natural corrosion protective layers on metal sheet piles.

Mitochondrial proteome evolution and genetic disease.

Pathogen-induced activation of disease-suppressive functions in the endophytic root microbiome

PhyloFunDB: A Pipeline to Create and Update Functional Gene Taxonomic Databases

Plant and soil fungal but not soil bacterial communities are linked in long-term fertilized grassland

Quantitative comparison between the rhizosphere effect of Arabidopsis thaliana and co-occurring plant species with a longer life history

Shifts in rhizosphere fungal community during secondary succession following abandonment from agriculture

Soil Microbiome Is More Heterogeneous in Organic Than in Conventional Farming System

Soil microbiome responses to the short-term effects of Amazonian deforestation.

Soil networks become more connected and take up more carbon as nature restoration progresses.

Soil-borne microbiome: linking diversity to function

Structural and functional variation in soil fungal communities associated with litter bags containing maize leaf

Successive DNA extractions improve characterization of soil microbial communities

Testing potential effects of maize expressing the Bacillus thuringiensis Cry1Ab endotoxin (Bt maize) on mycorrhizal fungal communities via DNA- and RNA-based pyrosequencing and molecular fingerprinting.

The wild side of plant microbiomes

Tracking fungal community responses to maize plants by DNA- and RNA-based pyrosequencing