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List of works by Shiro Fukuda

A promoter-level mammalian expression atlas

scientific article

Absolute expression values for mouse transcripts: re-annotation of the READ expression database by the use of CAGE and EST sequence tags

scientific article published in February 2004

Accumulation of molecular aberrations distinctive to hepatocellular carcinoma progression

scientific article published on 08 July 2020

An Atlas of Combinatorial Transcriptional Regulation in Mouse and Man

An atlas of combinatorial transcriptional regulation in mouse and man

scientific article

CAGE Basic/Analysis Databases: the CAGE resource for comprehensive promoter analysis

scientific article

CAGE: cap analysis of gene expression

scientific article published in March 2006

Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage

scientific article

Clusters of internally primed transcripts reveal novel long noncoding RNAs

scientific article

Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice

scientific article published on July 2003

Corrigendum: Genome-wide analysis of mammalian promoter architecture and evolution

scholarly article published in Nature Genetics

Corrigendum: Tiny RNAs associated with transcription start sites in animals

scholarly article published in Nature Genetics

Development of a DNA barcode tagging method for monitoring dynamic changes in gene expression by using an ultra high-throughput sequencer

scientific article

FANTOM5 CAGE profiles of human and mouse samples

scientific article published on 29 August 2017

Gateways to the FANTOM5 promoter level mammalian expression atlas

scientific article

Gene organization in rice revealed by full-length cDNA mapping and gene expression analysis through microarray

scientific article

Genetic and epigenetic basis of hepatoblastoma diversity

scientific article published on 20 September 2021

Genome-wide analysis of mammalian promoter architecture and evolution

scientific article (publication date: June 2006)

Hidden layers of human small RNAs

scientific article

Mapping of 19032 mouse cDNAs on mouse chromosomes

scientific article published in January 2002

Targeting a complex transcriptome: the construction of the mouse full-length cDNA encyclopedia

scientific article

The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line.

scientific article

Tiny RNAs associated with transcription start sites in animals

scientific article published on 19 April 2009

Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells

scientific article

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