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List of works by Kenshiro Oshima

A Histone Methyltransferase ESET Is Critical for T Cell Development.

scientific article published on 10 August 2016

Advanced Microbial Taxonomy Combined with Genome-Based-Approaches Reveals that Vibrio astriarenae sp. nov., an Agarolytic Marine Bacterium, Forms a New Clade in Vibrionaceae

scientific article

Analysis of Early Bacterial Communities on Volcanic Deposits on the Island of Miyake (Miyake-jima), Japan: a 6-year Study at a Fixed Site ⬇️

scientific article published on November 10, 2011

Bacterial Population Dynamics in a Laboratory Activated Sludge Reactor Monitored by Pyrosequencing of 16S rRNA ⬇️

scientific article published on October 26, 2012

Bifidobacterium kashiwanohense sp. nov., isolated from healthy infant faeces

scientific article

Birth and death of genes linked to chromosomal inversion.

scientific article

Cd1d-dependent regulation of bacterial colonization in the intestine of mice

scientific article published on 06 April 2009

Changes in the bacterial community in the fermentation process of kôso, a Japanese sugar-vegetable fermented beverage

scientific article published in November 2016

Characterization of early microbial communities on volcanic deposits along a vegetation gradient on the island of Miyake, Japan

scientific article

Characterization of the 17 strains of regulatory T cell-inducing human-derived Clostridia

scientific article

Chromosome painting in silico in a bacterial species reveals fine population structure

scientific article published on 16 March 2013

Circadian oscillations of microbial and functional composition in the human salivary microbiome.

scientific article published on 23 February 2017

Comparative Genomic Insights into Ecophysiology of Neutrophilic, Microaerophilic Iron Oxidizing Bacteria

scientific article

Comparative genome analysis of Lactobacillus reuteri and Lactobacillus fermentum reveal a genomic island for reuterin and cobalamin production

scientific article

Comparative genomics reveal the mechanism of the parallel evolution of O157 and non-O157 enterohemorrhagic Escherichia coli

scholarly article

Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes

scientific article

Complete Genome Sequence and Comparative Analysis of the Fish Pathogen Lactococcus garvieae ⬇️

scientific article published on August 4, 2011

Complete Genome Sequence of <i>Bradyrhizobium</i> sp. S23321: Insights into Symbiosis Evolution in Soil Oligotrophs ⬇️

scientific article published on March 28, 2012

Complete Genome Sequence of Bifidobacterium dentium Strain JCM 1195T, Isolated from Human Dental Caries

scientific article published on 9 April 2015

Complete Genome Sequence of Bifidobacterium kashiwanohense JCM 15439T, Isolated from Feces from a Healthy Japanese Infant

scientific article published on 16 April 2015

Complete Genome Sequence of Bifidobacterium scardovii Strain JCM 12489T, Isolated from Human Blood

scientific article published on 9 April 2015

Complete Genome Sequence of Burkholderia sp. Strain RPE64, Bacterial Symbiont of the Bean Bug Riptortus pedestris

scientific article published on 05 July 2013

Complete Genome Sequence of Cyanobacterium Geminocystis sp. Strain NIES-3708, Which Performs Type II Complementary Chromatic Acclimation

scientific article

Complete Genome Sequence of Cyanobacterium Geminocystis sp. Strain NIES-3709, Which Harbors a Phycoerythrin-Rich Phycobilisome

scientific article published on 30 April 2015

Complete Genome Sequence of Gardnerella vaginalis Strain JCM 11026T, Isolated from Vaginal Tracts of Women

scientific article

Complete Genome Sequence of Lactococcus lactis IO-1, a Lactic Acid Bacterium That Utilizes Xylose and Produces High Levels of l -Lactic Acid ⬇️

scientific article published on April 1, 2012

Complete Genome Sequence of Leptospirillum ferrooxidans Strain C2-3, Isolated from a Fresh Volcanic Ash Deposit on the Island of Miyake, Japan ⬇️

scientific article published on August 1, 2012

Complete Genome Sequence of Parascardovia denticolens JCM 12538T, Isolated from Human Dental Caries

scientific article published on 14 May 2015

Complete Genome Sequence of Plant Growth-Promoting Bacillus pumilus TUAT1

article

Complete Genome Sequence of Scardovia inopinata JCM 12537T, Isolated from Human Dental Caries

scientific article published on 14 May 2015

Complete Genome Sequence of Winogradskyella sp. Strain PG-2, a Proteorhodopsin-Containing Marine Flavobacterium.

scientific article

Complete Genome Sequence of a Phenanthrene Degrader, Mycobacterium sp. Strain EPa45 (NBRC 110737), Isolated from a Phenanthrene-Degrading Consortium

scientific article published on 16 July 2015

Complete Genome Sequence of the Equol-Producing Bacterium Adlercreutzia equolifaciens DSM 19450T.

scientific article published on 19 September 2013

Complete Genome Sequences of Arcobacter butzleri ED-1 and Arcobacter sp. Strain L, Both Isolated from a Microbial Fuel Cell ⬇️

scientific article published on November 1, 2011

Complete Genomic Sequence of the Equol-Producing Bacterium Eggerthella sp. Strain YY7918, Isolated from Adult Human Intestine ⬇️

scientific article published on October 1, 2011

Complete genome sequence and comparative analysis of the wild-type commensal Escherichia coli strain SE11 isolated from a healthy adult

scientific article

Complete genome sequence of Bacillus cereus NC7401, which produces high levels of the emetic toxin cereulide

scientific article

Complete genome sequence of Bifidobacterium angulatum JCM 7096(T) isolated from human feces

scientific article published on 30 June 2015

Complete genome sequence of Bifidobacterium bifidum JCM 1255(T) isolated from feces of a breast-fed infant

scientific article

Complete genome sequence of Bifidobacterium breve JCM 1192(T) isolated from infant feces

scientific article

Complete genome sequence of Bifidobacterium catenulatum JCM 1194(T) isolated from human feces

scientific article

Complete genome sequence of Bifidobacterium pseudocatenulatum JCM 1200(T) isolated from infant feces

scientific article

Complete genome sequence of the bacterium Porphyromonas gingivalis TDC60, which causes periodontal disease.

scientific article published on 24 June 2011

Complete genome sequence of the denitrifying and N(2)O-reducing bacterium Pseudogulbenkiania sp. strain NH8B.

scientific article published on November 2011

Complete genome sequence of the denitrifying and N2O-reducing bacterium Azoarcus sp. strain KH32C.

scientific article published on March 2012

Complete genome sequence of the probiotic Lactobacillus rhamnosus ATCC 53103

scientific article

Complete genome sequence of the serotype k Streptococcus mutans strain LJ23

scientific article published on May 2012

Complete genome sequence of the wild-type commensal Escherichia coli strain SE15, belonging to phylogenetic group B2.

scientific article

Complete genome sequences of rat and mouse segmented filamentous bacteria, a potent inducer of th17 cell differentiation

scientific article published in September 2011

Complete genomic DNA sequence of the East Asian spotted fever disease agent Rickettsia japonica.

scientific article

Complete genomic sequence of the O-desmethylangolensin-producing bacterium Clostridium rRNA cluster XIVa strain SY8519, isolated from adult human intestine

scientific article published on October 2011

Complete nucleotide sequence of pLD-TEX-KL, a 66-kb plasmid of Legionella dumoffii TEX-KL strain

scientific article published on 18 September 2007

Complete nucleotide sequence of the IncN plasmid encoding IMP-6 and CTX-M-2 from emerging carbapenem-resistant Enterobacteriaceae in Japan

scientific article

Computer-guided design of optimal microbial consortia for immune system modulation

scientific article published on 17 April 2018

Corrigendum to "Vibrio ishigakensis sp. nov., in Halioticoli clade isolated from seawater in Okinawa coral reef area, Japan" [Syst. Appl. Microbiol. 39 (5) (2016) 330-335].

scientific article published on 31 October 2017

DNA hypermethyation and silencing of PITX1 correlated with advanced stage and poor postoperative prognosis of esophageal squamous cell carcinoma.

scientific article published on 28 September 2017

Deciphering the relationship among phosphate dynamics, electron-dense body and lipid accumulation in the green alga Parachlorella kessleri

scientific article

Dissecting the taxonomic heterogeneity within Propionibacterium acnes: proposal for Propionibacterium acnes subsp. acnes subsp. nov. and Propionibacterium acnes subsp. elongatum subsp. nov.

scientific article published on 30 September 2015

Distribution and evolution of nitrogen fixation genes in the phylum Bacteroidetes.

scientific article

Draft Genome Sequence of Bacteroides reticulotermitis Strain JCM 10512T, Isolated from the Gut of a Termite

scientific article published on 13 February 2014

Draft Genome Sequence of Bifidobacterium aesculapii DSM 26737T, Isolated from Feces of Baby Common Marmoset

scientific article

Draft Genome Sequence of Butyricimonas faecihominis 30A1, Isolated from Feces of a Japanese Alzheimer's Disease Patient

scientific article published on 06 June 2019

Draft Genome Sequence of Clostridium straminisolvens Strain JCM 21531T, Isolated from a Cellulose-Degrading Bacterial Community.

scientific article published on 20 February 2014

Draft Genome Sequence of Cytophaga fermentans JCM 21142T, a Facultative Anaerobe Isolated from Marine Mud.

scientific article published on 27 March 2014

Draft Genome Sequence of Lactobacillus farciminis NBRC 111452, Isolated from Kôso, a Japanese Sugar-Vegetable Fermented Beverage

scientific article published on 14 January 2016

Draft Genome Sequence of Lactobacillus sucicola JCM 15457T, a Motile Lactic Acid Bacterium Isolated from Oak Sap.

scientific article

Draft Genome Sequence of Leuconostoc mesenteroides 213M0, Isolated from Traditional Fermented Mare Milk Airag in Bulgan Aimag, Mongolia

scientific article

Draft Genome Sequence of Leuconostoc mesenteroides 406 Isolated from the Traditional Fermented Mare Milk Airag in Tuv Aimag, Mongolia

scientific article

Draft Genome Sequence of Marine Flavobacterium Jejuia pallidilutea Strain 11shimoA1 and Pigmentation Mutants

scientific article

Draft Genome Sequence of NBRC 113063, Isolated from Kôso, a Japanese Sugar-Vegetable Fermented Beverage

scholarly article published November 2018

Draft Genome Sequence of Paenibacillus pini JCM 16418T, Isolated from the Rhizosphere of Pine Tree

scientific article published on 20 March 2014

Draft Genome Sequence of Sporolactobacillus inulinus NBRC 111894, Isolated from Kôso, a Japanese Sugar-Vegetable Fermented Beverage

scientific article published on 10 October 2019

Draft Genome Sequence of Streptococcus orisasini SH06, Isolated from a Healthy Thoroughbred Gastrointestinal Tract

scientific article

Draft Genome Sequence of Streptomyces incarnatus NRRL8089, which Produces the Nucleoside Antibiotic Sinefungin

scientific article published on 9 July 2015

Draft Genome Sequence of the Alkaliphilic and Xylanolytic Paenibacillus sp. Strain JCM 10914, Isolated from the Gut of a Soil-Feeding Termite

scientific article published on 23 January 2014

Draft Genome Sequence of the Betaproteobacterial Endosymbiont Associated with the Fungus Mortierella elongata FMR23-6

scientific article

Draft Genome Sequence of the Boron-Tolerant and Moderately Halotolerant Bacterium Gracilibacillus boraciitolerans JCM 21714T

scientific article published on 20 February 2014

Draft Genome Sequences of Geomicrobium sp. Strains JCM 19037, JCM 19038, JCM 19039, and JCM 19055, Isolated from Aquatic Samples

scientific article

Draft Genome Sequences of Marine Flavobacterium Algibacter lectus Strains SS8 and NR4.

scientific article

Draft Genome Sequences of Marine Flavobacterium Nonlabens Strains NR17, NR24, NR27, NR32, NR33, and Ara13.

scientific article

Draft Genome Sequences of Marinobacter similis A3d10T and Marinobacter salarius R9SW1T.

scientific article

Draft Genome Sequences of Three Alkaliphilic Bacillus Strains, Bacillus wakoensis JCM 9140T, Bacillus akibai JCM 9157T, and Bacillus hemicellulosilyticus JCM 9152T.

scientific article published on 30 January 2014

Draft Genome Sequences of Three Strains of Bacteroides pyogenes Isolated from a Cat and Swine

scientific article published on 30 January 2014

Draft Genome Sequences of Two Lactobacillus Strains, L. farraginis JCM 14108T and L. composti JCM 14202T, Isolated from Compost of Distilled Shōchū Residue

scientific article published on 27 March 2014

Draft Genome Sequences of Two Vibrionaceae Species, Vibrio ponticus C121 and Photobacterium aphoticum C119, Isolated as Coral Reef Microbiota

scientific article

Draft Genome Sequences of Vibrio sp. Strains Isolated from Tetrodotoxin-Bearing Scavenging Gastropod

scientific article

Draft Genome Sequencing of the Highly Halotolerant and Allopolyploid Yeast Zygosaccharomyces rouxii NBRC 1876.

scientific article published on 16 February 2017

Draft genome sequencing and comparative analysis of Aspergillus sojae NBRC4239. ⬇️

scientific article published on June 2011

Dysbiosis in the Gut Microbiota of Patients with Multiple Sclerosis, with a Striking Depletion of Species Belonging to Clostridia XIVa and IV Clusters

scientific article published on 14 September 2015

Dysbiosis of salivary microbiota in inflammatory bowel disease and its association with oral immunological biomarkers

scientific article

Ecophysiological consequences of alcoholism on human gut microbiota: implications for ethanol-related pathogenesis of colon cancer

scientific article published on 13 June 2016

Emergence of Staphylococcus aureus carrying multiple drug resistance genes on a plasmid encoding exfoliative toxin B.

scientific article published on 30 September 2013

Erratum: Corrigendum: Obesity-induced gut microbial metabolite promotes liver cancer through senescence secretome

scholarly article published in Nature

Evolution in an oncogenic bacterial species with extreme genome plasticity: Helicobacter pylori East Asian genomes

scientific article

Evolutionary origin of insect-Wolbachia nutritional mutualism.

scientific article

Genome Analysis Suggests that the Soil Oligotrophic Bacterium Agromonas oligotrophica (Bradyrhizobium oligotrophicum) Is a Nitrogen-Fixing Symbiont of Aeschynomene indica ⬇️

scientific article published on February 8, 2013

Genome Sequence of " Serratia symbiotica" Strain IS, a Facultative Bacterial Symbiont of the Pea Aphid

scientific article published on 09 May 2019

Genome analysis of Rubritalea profundi SAORIC-165T, the first deep-sea verrucomicrobial isolate, from the northwestern Pacific Ocean

scientific article published on 26 February 2019

Genome analysis of a novel Bradyrhizobium sp. DOA9 carrying a symbiotic plasmid.

scientific article published on 24 February 2015

Genome evolution and plasticity of Serratia marcescens, an important multidrug-resistant nosocomial pathogen

scientific article published on August 2014

Genome sequence of Vibrio parahaemolyticus: a pathogenic mechanism distinct from that of V cholerae.

scientific article

Genome sequence of the endocellular obligate symbiont of tsetse flies, Wigglesworthia glossinidia

scientific article

Genome-wide survey of mutual homologous recombination in a highly sexual bacterial species

scientific article

Genomic adaptation of the Lactobacillus casei group

scientific article

Genomic analysis by deep sequencing of the probiotic Lactobacillus brevis KB290 harboring nine plasmids reveals genomic stability

scientific article published on 27 March 2013

Genomic and metagenomic analysis of microbes in a soil environment affected by the 2011 Great East Japan Earthquake tsunami.

scientific article published on 14 January 2016

Genomic features of Lactococcus lactis IO-1, a lactic acid bacterium that utilizes xylose and produces high levels of L-lactic acid

scientific article published on 7 September 2013

Genomic structure and evolution of the mating type locus in the green seaweed Ulva partita

scientific article published on 15 September 2017

Highly efficient lipid production in the green alga Parachlorella kessleri: draft genome and transcriptome endorsed by whole-cell 3D ultrastructure

scientific article

Identification of a novel Staphylococcus pseudintermedius exfoliative toxin gene and its prevalence in isolates from canines with pyoderma and healthy dogs ⬇️

scientific article published on September 28, 2010

Individual Apostichopus japonicus fecal microbiome reveals a link with polyhydroxybutyrate producers in host growth gaps

scientific article

Inhibition of Dectin-1 Signaling Ameliorates Colitis by Inducing Lactobacillus-Mediated Regulatory T Cell Expansion in the Intestine

scientific article

Insight into the transmission biology and species-specific functional capabilities of tsetse (Diptera: glossinidae) obligate symbiont Wigglesworthia

scientific article published on 14 February 2012

Insights into the Evolution of Shells and Love Darts of Land Snails Revealed from Their Matrix Proteins.

scientific article published in February 2019

Interferon-γ constrains cytokine production of group 2 innate lymphoid cells

scientific article published on October 2015

Lactobacillus kosoi sp. nov., a fructophilic species isolated from kôso, a Japanese sugar-vegetable fermented beverage

scientific article published on 20 January 2018

Long-read metagenomic exploration of extrachromosomal mobile genetic elements in the human gut

scientific article published on 27 August 2019

Loss of cytochrome cM stimulates cyanobacterial heterotrophic growth in the dark

scientific article

Major Anaerobic Bacteria Responsible for the Production of Carcinogenic Acetaldehyde from Ethanol in the Colon and Rectum.

scientific article published on 11 January 2016

Massive genome erosion and functional adaptations provide insights into the symbiotic lifestyle of Sodalis glossinidius in the tsetse host

scientific article

Methylocaldum marinum sp. nov., a thermotolerant, methane-oxidizing bacterium isolated from marine sediments, and emended description of the genus Methylocaldum.

scientific article

Methyloceanibacter caenitepidi gen. nov., sp. nov., a facultatively methylotrophic bacterium isolated from marine sediments near a hydrothermal vent

scientific article

Microbial Populations Responsive to Denitrification-Inducing Conditions in Rice Paddy Soil, as Revealed by Comparative 16S rRNA Gene Analysis.

scientific article published in June 2010

Microbial populations responsive to denitrification-inducing conditions in rice paddy soil, as revealed by comparative 16S rRNA gene analysis.

scientific article

Nucleotide substitutions in Staphylococcus aureus strains, Mu50, Mu3, and N315.

scientific article

Obesity-induced gut microbial metabolite promotes liver cancer through senescence secretome

scientific article published on 26 June 2013

Plasma membrane‐localized Al‐transporter from blue hydrangea sepals is a member of the anion permease family ⬇️

scientific article published on February 25, 2013

Proteome analysis of shell matrix proteins in the brachiopod Laqueus rubellus

scientific article

Reductive evolution of bacterial genome in insect gut environment

scientific article

Revealing microbial community structures in large- and small-scale activated sludge systems by barcoded pyrosequencing of 16S rRNA gene

scientific article published in January 2012

Robustness of gut microbiota of healthy adults in response to probiotic intervention revealed by high-throughput pyrosequencing

scientific article published on 09 April 2013

Seasonal transition of active bacterial and archaeal communities in relation to water management in paddy soils

scientific article

Small genome symbiont underlies cuticle hardness in beetles

scientific article published on 18 September 2017

Solar-panel and parasol strategies shape the proteorhodopsin distribution pattern in marine Flavobacteriia

scientific article

Tepidicaulis marinus gen. nov., sp. nov., a marine bacterium that reduces nitrate to nitrous oxide under strictly microaerobic conditions

scientific article

The Whole-genome sequencing of the obligate intracellular bacterium Orientia tsutsugamushi revealed massive gene amplification during reductive genome evolution

scientific article published on 28 May 2008

The complete genomic sequence of Mycoplasma penetrans, an intracellular bacterial pathogen in humans

scientific article

The genome sequence of Clostridium botulinum type C neurotoxin-converting phage and the molecular mechanisms of unstable lysogeny

scientific article

The gut microbiome of healthy Japanese and its microbial and functional uniqueness.

scientific article

The lifestyle of the segmented filamentous bacterium: a non-culturable gut-associated immunostimulating microbe inferred by whole-genome sequencing

scientific article

Thermophile-fermented compost as a possible scavenging feed additive to prevent peroxidation

scientific article published on 19 March 2013

Time-series metagenomic analysis reveals robustness of soil microbiome against chemical disturbance

scientific article

Tonoplast- and plasma membrane-localized aquaporin-family transporters in blue hydrangea sepals of aluminum hyperaccumulating plant

scientific article

Unique pioneer microbial communities exposed to volcanic sulfur dioxide

scientific article published on 21 January 2016

Vibrio ishigakensis sp. nov., in Halioticoli clade isolated from seawater in Okinawa coral reef area, Japan.

scientific article

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