List of works by Edgar Wingender

"Upstream Analysis": An Integrated Promoter-Pathway Analysis Approach to Causal Interpretation of Microarray Data

scientific article

A compilation of composite regulatory elements affecting gene transcription in vertebrates

scientific article

A discriminative approach for unsupervised clustering of DNA sequence motifs

scientific article

A novel computational approach for the prediction of networked transcription factors of aryl hydrocarbon-receptor-regulated genes.

scientific article

Activation of nuclear factor-kappaB in macrophages by mycoplasmal lipopeptides.

scientific article published on December 1998

Advanced computational biology methods identify molecular switches for malignancy in an EGF mouse model of liver cancer

scientific article (publication date: 28 March 2011)

An approach to evaluate the topological significance of motifs and other patterns in regulatory networks

scientific article

Automatic annotation of genomic regulatory sequences by searching for composite clusters.

scientific article

Beyond microarrays: find key transcription factors controlling signal transduction pathways

scientific article

Building a knowledge base for systems pathology.

scientific article

Classification of eukaryotic transcription factors

scientific article

Coexpression and coregulation analysis of time-series gene expression data in estrogen-induced breast cancer cell

scientific article

Combining structural analysis of DNA with search routines for the detection of transcription regulatory elements

scientific article published in October 1996

Compilation of transcription regulating proteins

scientific article

Complete synthesis and transcription in vitro of a gene coding for human ribosomal 5S RNA.

scientific article published in April 1988

Composite Module Analyst: a fitness-based tool for identification of transcription factor binding site combinations

scientific article published on 10 February 2006

Composite Module Analyst: identification of transcription factor binding site combinations using genetic algorithm

scientific article

Composite regulatory elements: classification and description in the COMPEL database

scientific article published in July 1997

Composition-sensitive analysis of the human genome for regulatory signals

article

Computational Detection of Stage-Specific Transcription Factor Clusters during Heart Development.

scientific article

Computational Identification of Key Regulators in Two Different Colorectal Cancer Cell Lines.

scientific article

Computer tool FUNSITE for analysis of eukaryotic regulatory genomic sequences

scientific article published on January 1, 1995

Computer-assisted identification of cell cycle-related genes: new targets for E2F transcription factors

article

Connecting high-dimensional mRNA and miRNA expression data for binary medical classification problems.

scientific article

Consistent re-modeling of signaling pathways and its implementation in the TRANSPATH database.

scientific article published on January 2004

Construction of predictive promoter models on the example of antibacterial response of human epithelial cells

scientific article

Criteria for an updated classification of human transcription factor DNA-binding domains

scientific article published on 16 January 2013

DEEP--a tool for differential expression effector prediction

scientific article

Database-assisted promoter analysis

article

Databases on transcriptional regulation: TRANSFAC, TRRD and COMPEL

scientific article published in January 1998

Defined Engineered Human Myocardium With Advanced Maturation for Applications in Heart Failure Modeling and Repair.

scientific article published on 6 February 2017

Editorial: Systems Biology of Transcription Regulation.

scientific article published on 6 July 2016

EndoNet: an information resource about endocrine networks.

scientific article

EndoNet: an information resource about the intercellular signaling network

scientific article

Evaluating phylogenetic footprinting for human-rodent comparisons

scientific article published on 6 December 2005

ExPlain: finding upstream drug targets in disease gene regulatory networks.

scientific article

Experimental analysis and computer prediction of CTF/NFI transcription factor DNA binding sites.

scientific article published on April 2000

Expression of human parathyroid hormone in Escherichia coli

scientific article published in Journal of Biological Chemistry

Expression of the RT6 mono(ADP-ribosyl)transferases is regulated by two promoter regions

scientific article published on 01 January 1997

Faithful Transcription of Ribosomal 5-S RNA in vitro Depends on the Presence of Several Factors

scientific article published on 01 March 1983

Fluorescamine and fluorescein: A new energy-transfer pair and its application to the binding of histone H5 to nucleosomes

scientific article published on 01 March 1982

GeneExpress: a computer system for description, analysis, and recognition of regulatory sequences in eukaryotic genome.

scientific article

High-Throughput Profiling of Colorectal Cancer Liver Metastases Reveals Intra- and Inter-Patient Heterogeneity in the EGFR and WNT Pathways Associated with Clinical Outcome

scientific article published on 21 April 2022

IGFBP2 Is a Potential Master Regulator Driving the Dysregulated Gene Network Responsible for Short Survival in Glioblastoma Multiforme

scientific article published on 15 June 2021

Identification of composite promoter modules in inflammation-regulated genes.

scientific article published on 26 February 2009

Identification of dominant signaling pathways from proteomics expression data.

scientific article

Identifying cell-specific microRNA transcriptional start sites

scientific article published on 19 April 2016

Integrated databases and computer systems for studying eukaryotic gene expression.

scientific article

Integration of gene expression data with prior knowledge for network analysis and validation.

scientific article

Isolation of a transcription complex for ribosomal 5S RNA

scientific article published on August 1984

Large-scale preparation and biological activity of recombinant human parathyroid hormone.

scientific article published in April 1995

MATCH: A tool for searching transcription factor binding sites in DNA sequences

scientific article

MatrixCatch--a novel tool for the recognition of composite regulatory elements in promoters

scientific article

Mining the genome and regulatory networks

scientific article published on 22 March 2006

Modulation of the nucleosome structure by histone acetylation

scientific article published on 01 September 1980

Molecular mechanistic associations of human diseases

scientific article

Multi-omics "upstream analysis" of regulatory genomic regions helps identifying targets against methotrexate resistance of colon cancer.

scientific article

Multiobjective triclustering of time-series transcriptome data reveals key genes of biological processes

scientific article

NERO: a biomedical named-entity (recognition) ontology with a large, annotated corpus reveals meaningful associations through text embedding

scientific article published on 20 October 2021

NF-Y Binding Site Architecture Defines a C-Fos Targeted Promoter Class

scientific article

New perspectives in the differentiation of bone-forming cells

scientific article published on December 1, 1992

Organization and sequence of the gene encoding the human acrosin-trypsin inhibitor (HUSI-II)

scientific article

PC-TraFF: identification of potentially collaborating transcription factors using pointwise mutual information

scientific article published in December 2015

PRODORIC: prokaryotic database of gene regulation.

scientific article published on January 2003

Parameters Affecting the Superreactivity of the Cysteine Side Chain in Histone H3. Characterization of a 32-Amino-Acid Peptide Including Cys-1 10

scientific article published on 01 March 1982

Parathyroid Hormone-related Protein Antagonizes the Action of Parathyroid Hormone on Adult Cardiomyocytes

scientific article published in Journal of Biological Chemistry

Petri net applications in molecular biology. Preface.

scientific article published in January 2010

Production of human parathyroid hormone by recombinant Escherichia coli TG1 on synthetic medium.

scientific article

Quantum coupled mutation finder: predicting functionally or structurally important sites in proteins using quantum Jensen-Shannon divergence and CUDA programming.

scientific article

Recognition of NFATp/AP-1 composite elements within genes induced upon the activation of immune cells

article

Recognition of multiple patterns in unaligned sets of sequences: comparison of kernel clustering method with other methods

scientific article published in July 2004

Recognition of regulatory regions in genomic sequences.

scientific article published in June 1994

Representing the Architecture of Signal Transduction Networks in an Algebraic Form

scientific article published on 01 November 2002

Stimulation by defined parathyroid hormone fragments of cell proliferation in skeletal-derived cell cultures

scientific article published on December 1990

Stimulation of cell proliferation in skeletal tissues of the rat by defined parathyroid hormone fragments

scientific article published on August 1991

Stimulation of creatine kinase activity in rat skeletal tissue in vivo and in vitro by protease-resistant variants of parathyroid hormone fragments

scientific article

Structural changes in condylar cartilage following prolonged exposure to the human parathyroid hormone fragment (hPTH) 1?34 in vitro

scientific article published on 01 May 1992

Structure of recombinant human parathyroid hormone in solution using multidimensional NMR spectroscopy.

scientific article

Structure of the gene encoding the rat T cell ecto-ADP-ribosyltransferase RT6.

scientific article published in September 1996

Studies on the production of human parathyroid hormone by recombinant Escherichia coli.

scientific article

Synthesis and properties of the new thiol-specific reagent difluorescein disulfide: Its application on histone-histone and histone-DNA interactions

scientific article published on 01 December 1982

Systematic DNA-binding domain classification of transcription factors.

scientific article

TFClass: a classification of human transcription factors and their rodent orthologs

scientific article published on 31 October 2014

TFClass: an expandable hierarchical classification of human transcription factors

scientific article published on 24 November 2012

TFClass: expanding the classification of human transcription factors to their mammalian orthologs

scientific article published on 26 October 2017

TRANSCompel: a database on composite regulatory elements in eukaryotic genes.

scientific article published on January 2002

TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes

scientific article

TRANSFAC retrieval program: a network model database of eukaryotic transcription regulating sequences and proteins

scientific article published in January 1994

TRANSFAC, TRANSPATH and CYTOMER as starting points for an ontology of regulatory networks.

scientific article published on 16 March 2004

TRANSFAC, TRRD and COMPEL: towards a federated database system on transcriptional regulation.

scientific article published on January 1997

TRANSFAC: a database on transcription factors and their DNA binding sites

scientific article

TRANSFAC: transcriptional regulation, from patterns to profiles

scientific article (publication date: 2003)

TRANSPATH--a high quality database focused on signal transduction

scientific article

TRANSPATH: an information resource for storing and visualizing signaling pathways and their pathological aberrations.

scientific article

TRANSPATH: an integrated database on signal transduction and a tool for array analysis

scientific article

Text mining-based word representations for biomedical data analysis and protein-protein interaction networks in machine learning tasks

scientific article published on 15 October 2021

The BioPAX community standard for pathway data sharing

scientific article (publication date: September 2010)

The Helmholtz Network for Bioinformatics: an integrative web portal for bioinformatics resources.

scientific article published in January 2004

The TRANSFAC project as an example of framework technology that supports the analysis of genomic regulation.

scientific article

The TRANSFAC system on gene expression regulation.

scientific article

The ontology-based answers (OBA) service: a connector for embedded usage of ontologies in applications

scientific article

The pairwise disconnectivity index as a new metric for the topological analysis of regulatory networks.

scientific article

The promoter of the human parathyroid hormone gene contains a functional cyclic AMP-response element.

scientific article published on October 1990

The structure of human parathyroid hormone from a study of fragments in solution using 1H NMR spectroscopy and its biological implications

scientific article published on February 1994

TiProD: the Tissue-specific Promoter Database.

scientific article

Topology of mammalian transcription networks.

scientific article

Zinc ions are differentially required for the transcription of ribosomal 5S RNA and tRNA in a HeLa-cell extract.

scientific article published on December 1984

[Computer analysis of conformational features of the eukaryotic TATA-box DNA promotors]

scientific article published on 01 July 1997

[Differentiation of osteogenetic cells: systems and regulators]

scientific article published on 01 July 1992

[Integrating knowledge on transcriptional regulation of eukaryotic genes based on information from TRANSFAC, TRRD, and COMPEL databases]

scientific article published on 01 July 1997

[Modeling dynamics of gene net, regulating the cell cycle in mammalian cells]

scientific article published on 01 September 2003

mirTrans: a resource of transcriptional regulation on microRNAs for human cell lines.

scientific article published on 25 October 2017

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