List of works - Alexandre Urzhumtsev

A regular pattern of Ig super-motifs defines segmental flexibility as the elastic mechanism of the titin chain

scientific article

Ab initio phasing based on topological restraints: automated determination of the space group and the number of molecules in the unit cell

scientific article published on 26 August 2004

Aminoglycoside interactions and impacts on the eukaryotic ribosome.

scientific article published on 5 December 2017

Automatic multiple-zone rigid-body refinement with a large convergence radius

scientific article published on 16 July 2009

Cluster analysis for phasing with molecular replacement: a feasibility study

scientific article published on 20 June 2009

Connectivity-based ab initio phasing at different solvent levels

scientific article published on 25 April 2003

Connectivity-based ab initio phasing: from low resolution to a secondary structure

scientific article published on 19 September 2003

Crystal structure of the 80S yeast ribosome

scientific article

Crystal structure of the Homo sapiens cytoplasmic ribosomal decoding site complexed with apramycin

scientific article published on 01 May 2006

Crystallographic model quality at a glance

scientific article published on 20 February 2009

Crystallographic studies of Homo sapiens ribosomal decoding A site complexed with aminoglycosides

scientific article published on 01 January 2005

Direct phasing by binary integer programming

scientific article published on 18 April 2002

FEM: feature-enhanced map.

scientific article

Flat bulk-solvent model: obtaining optimal parameters

scientific article published on 23 August 2002

From deep TLS validation to ensembles of atomic models built from elemental motions

scientific article published on 28 July 2015

From deep TLS validation to ensembles of atomic models built from elemental motions. Addenda and corrigendum.

scientific article published on 31 August 2016

From deep TLS validation to ensembles of atomic models built from elemental motions. II. Analysis of TLS refinement results by explicit interpretation.

scientific article published on 8 June 2018

Helical Symmetry of Nucleic Acids: Obstacle or Help in Structure Solution?

scientific article published in January 2016

Including crystallographic symmetry in quantum-based refinement: Q|R#2

scientific article published on 01 January 2020

Low-resolution ab initio phasing of Sarcocystis muris lectin SML-2.

scientific article published on 19 April 2006

Metrics for comparison of crystallographic maps

scientific article

Multiple rotation function

scientific article published on 23 November 2002

New tools for the analysis and validation of cryo-EM maps and atomic models

scientific article published on 03 September 2018

On effective and optical resolutions of diffraction data sets

scientific article

On macromolecular refinement at subatomic resolution with interatomic scatterers

scientific article

On the possibility of the observation of valence electron density for individual bonds in proteins in conventional difference maps

scientific article published on 23 January 2004

On the use of logarithmic scales for analysis of diffraction data

scientific article

On the use of low-resolution data for translation search in molecular replacement.

scientific article published on 20 December 2001

Patterson-guided ab initio analysis of structures with helical symmetry

scientific article published on 19 September 2008

Predicting X-ray diffuse scattering from translation-libration-screw structural ensembles

scientific article

Programming new geometry restraints: parallelity of atomic groups

scientific article published on 8 July 2015

Real-space refinement in PHENIX for cryo-EM and crystallography

scientific article published on 30 May 2018

Structure of the protein core of translation initiation factor 2 in apo, GTP-bound and GDP-bound forms

scientific article

TLS from fundamentals to practice

scientific article

The integrative role of cryo electron microscopy in molecular and cellular structural biology

scientific article

To free or not to free?

scientific article published on 28 November 2014

Towards automated crystallographic structure refinement with phenix.refine

scientific article (publication date: April 2012)

Two conformational states in the crystal structure of the Homo sapiens cytoplasmic ribosomal decoding A site

scientific article

Ultralow-resolutionab initiophasing of filamentous proteins: crystals from a six-Ig fragment of titin as a case study

phenix.model_vs_data: a high-level tool for the calculation of crystallographic model and data statistics

scientific article

List of works by Alexandre Urzhumtsev

A regular pattern of Ig super-motifs defines segmental flexibility as the elastic mechanism of the titin chain

Ab initio phasing based on topological restraints: automated determination of the space group and the number of molecules in the unit cell

Aminoglycoside interactions and impacts on the eukaryotic ribosome.

Automatic multiple-zone rigid-body refinement with a large convergence radius

Cluster analysis for phasing with molecular replacement: a feasibility study

Connectivity-based ab initio phasing at different solvent levels

Connectivity-based ab initio phasing: from low resolution to a secondary structure

Crystal structure of the 80S yeast ribosome

Crystal structure of the Homo sapiens cytoplasmic ribosomal decoding site complexed with apramycin

Crystallographic model quality at a glance

Crystallographic studies of Homo sapiens ribosomal decoding A site complexed with aminoglycosides

Direct phasing by binary integer programming

FEM: feature-enhanced map.

Flat bulk-solvent model: obtaining optimal parameters

From deep TLS validation to ensembles of atomic models built from elemental motions

From deep TLS validation to ensembles of atomic models built from elemental motions. Addenda and corrigendum.

From deep TLS validation to ensembles of atomic models built from elemental motions. II. Analysis of TLS refinement results by explicit interpretation.

Helical Symmetry of Nucleic Acids: Obstacle or Help in Structure Solution?

Including crystallographic symmetry in quantum-based refinement: Q|R#2

Low-resolution ab initio phasing of Sarcocystis muris lectin SML-2.

Metrics for comparison of crystallographic maps

Multiple rotation function

New tools for the analysis and validation of cryo-EM maps and atomic models

On effective and optical resolutions of diffraction data sets

On macromolecular refinement at subatomic resolution with interatomic scatterers

On the possibility of the observation of valence electron density for individual bonds in proteins in conventional difference maps

On the use of logarithmic scales for analysis of diffraction data

On the use of low-resolution data for translation search in molecular replacement.

Patterson-guided ab initio analysis of structures with helical symmetry

Predicting X-ray diffuse scattering from translation-libration-screw structural ensembles

Programming new geometry restraints: parallelity of atomic groups

Real-space refinement in PHENIX for cryo-EM and crystallography

Structure of the protein core of translation initiation factor 2 in apo, GTP-bound and GDP-bound forms

TLS from fundamentals to practice

The integrative role of cryo electron microscopy in molecular and cellular structural biology

To free or not to free?

Towards automated crystallographic structure refinement with phenix.refine

Two conformational states in the crystal structure of the Homo sapiens cytoplasmic ribosomal decoding A site

Ultralow-resolutionab initiophasing of filamentous proteins: crystals from a six-Ig fragment of titin as a case study

phenix.model_vs_data: a high-level tool for the calculation of crystallographic model and data statistics