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List of works by Gholamreza Bidkhori

A pathology atlas of the human cancer transcriptome

scientific article

A systems biology approach to reconcile metabolic network models with application to Synechocystis sp. PCC 6803 for biofuel production.

scientific article

C-element: a new clustering algorithm to find high quality functional modules in PPI networks

scientific article

Cancer systems biology and modeling: microscopic scale and multiscale approaches.

scientific article published on 18 March 2014

Candidate gene prioritization

scientific article published on 15 August 2012

Characterization of heterogeneous redox responses in hepatocellular carcinoma patients using network analysis.

scientific article published on 31 December 2018

Compositional and functional differences of the mucosal microbiota along the intestine of healthy individuals

scientific article published on 11 September 2020

Disease, Drugs and Dysbiosis: Understanding Microbial Signatures in Metabolic Disease and Medical Interventions

scientific article published on 09 September 2020

ESS: A Tool for Genome-Scale Quantification of Essentiality Score for Reaction/Genes in Constraint-Based Modeling

article

FogLight: an efficient matrix-based approach to construct metabolic pathways by search space reduction

scientific article

Genome scale modeling in systems biology: algorithms and resources

scientific article

High Cell Density Perfusion Culture has a Maintained Exoproteome and Metabolome

scientific article published on 13 July 2018

HomoTarget: a new algorithm for prediction of microRNA targets in Homo sapiens

scientific article published on 19 November 2012

Low Shear Stress Increases Recombinant Protein Production and High Shear Stress Increases Apoptosis in Human Cells

scientific article published on 07 October 2020

Metabolic Network-Based Identification and Prioritization of Anticancer Targets Based on Expression Data in Hepatocellular Carcinoma

Metabolic network-based stratification of hepatocellular carcinoma reveals three distinct tumor subtypes

article published in the Proceedings of the National Academy of Sciences of the United States of America

Modeling of tumor progression in NSCLC and intrinsic resistance to TKI in loss of PTEN expression

scientific article

Molecular Mechanisms behind Free Radical Scavengers Function against Oxidative Stress

scientific article

Multi-Omic Data Interpretation to Repurpose Subtype Specific Drug Candidates for Breast Cancer

scientific article published on 07 May 2019

Postmortem Cortical Transcriptomics of Lewy Body Dementia Reveal Mitochondrial Dysfunction and Lack of Neuroinflammation

scientific article published on 24 June 2019

Reconstruction of an Integrated Genome-Scale Co-Expression Network Reveals Key Modules Involved in Lung Adenocarcinoma ⬇️

scientific article published on July 11, 2013

TCSBN: a database of tissue and cancer specific biological networks

scientific article published on 24 October 2017

Tamoxifen-Induced Apoptosis of MCF-7 Cells via GPR30/PI3K/MAPKs Interactions: Verification by ODE Modeling and RNA Sequencing

scientific article published on 11 July 2018

The acute effect of metabolic cofactor supplementation: a potential therapeutic strategy against non-alc33oholic fatty liver disease

scientific article published on 01 April 2020

Understanding the Representative Gut Microbiota Dysbiosis in Metformin-Treated Type 2 Diabetes Patients Using Genome-Scale Metabolic Modeling.

scientific article published on 25 June 2018

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