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List of works by Chih-Hsuan Wei

Accelerating literature curation with text-mining tools: a case study of using PubTator to curate genes in PubMed abstracts

scientific article

An overview of the BioCreative 2012 Workshop Track III: interactive text mining task

scientific article published on 17 January 2013

Assessing the state of the art in biomedical relation extraction: overview of the BioCreative V chemical-disease relation (CDR) task

scientific article

Assisting document triage for human kinome curation via machine learning

scholarly article by Yi-Yu Hsu et al published 1 January 2018 in Database

Automatic extraction of drug indications from FDA drug labels

scientific article

BC4GO: a full-text corpus for the BioCreative IV GO task

scientific article

Beyond accuracy: creating interoperable and scalable text-mining web services

scientific article (publication date: 16 February 2016)

BioConceptVec: Creating and evaluating literature-based biomedical concept embeddings on a large scale

scientific article published on 23 April 2020

BioCreative V CDR task corpus: a resource for chemical disease relation extraction

scientific article

BioHackathon 2015: Semantics of data for life sciences and reproducible research

scientific article published on 24 February 2020

Cross-species gene normalization by species inference ⬇️

scientific article published on October 3, 2011

GNormPlus: An Integrative Approach for Tagging Genes, Gene Families, and Protein Domains

scientific article

Gene Name Disambiguation Using Multi-Scope Species Detection

scientific article published on January 2014

Hybrid curation of gene-mutation relations combining automated extraction and crowdsourcing

scientific article

Improving chemical disease relation extraction with rich features and weakly labeled data

scientific article (publication date: 7 October 2016)

Large-scale event extraction from literature with multi-level gene normalization

scientific article

LitVar: a semantic search engine for linking genomic variant data in PubMed and PMC.

scientific article published in July 2018

Mining chemical patents with an ensemble of open systems

scientific article (publication date: 2016)

On expert curation and scalability: UniProtKB/Swiss-Prot as a case study ⬇️

scientific article published on 13 July 2017

On expert curation and sustainability: UniProtKB/Swiss-Prot as a case study

scientific article published on 14 December 2016

Overview of the BioCreative VI Precision Medicine Track: mining protein interactions and mutations for precision medicine

Overview of the BioCreative VI text-mining services for Kinome Curation Track

scientific article published on 01 January 2018

PMC text mining subset in BioC: about three million full-text articles and growing

scientific article published on 01 September 2019

Prioritizing PubMed articles for the Comparative Toxicogenomic Database utilizing semantic information

scientific article

PubTator central: automated concept annotation for biomedical full text articles

scientific article published on 01 July 2019

PubTator: a web-based text mining tool for assisting biocuration

scientific article (publication date: July 2013)

Recent advances of automated methods for searching and extracting genomic variant information from biomedical literature

scientific article published on 07 August 2020

SR4GN: A Species Recognition Software Tool for Gene Normalization ⬇️

scientific article (publication date: 2012)

Scaling up data curation using deep learning: An application to literature triage in genomic variation resources

scientific article published on 13 August 2018

SimConcept: A Hybrid Approach for Simplifying Composite Named Entities in Biomedicine

scientific article published on 01 January 2014

SimConcept: a hybrid approach for simplifying composite named entities in biomedical text

scientific article

Ten tips for a text-mining-ready article: How to improve automated discoverability and interpretability

scientific article published on 01 June 2020

Text Mining for Translational Bioinformatics

scientific article published on 25 August 2015

The gene normalization task in BioCreative III

scientific article (publication date: 3 October 2011)

Unsupervised corpus distillation for represented indicator measurement on focus species detection

scientific article published in January 2013

Using deep learning to identify translational research in genomic medicine beyond bench to bedside

scholarly article by Yi-Yu Hsu et al published 1 January 2019 in Database

ezTag: tagging biomedical concepts via interactive learning.

scientific article published in July 2018

tmBioC: improving interoperability of text-mining tools with BioC.

scientific article

tmChem: a high performance approach for chemical named entity recognition and normalization

scientific article

tmVar 2.0: integrating genomic variant information from literature with dbSNP and ClinVar for precision medicine

scientific article published in September 2017

tmVar: a text mining approach for extracting sequence variants in biomedical literature

scientific article

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