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List of works by Benjamin D. Greenbaum

A neoantigen fitness model predicts tumour response to checkpoint blockade immunotherapy.

scientific article published on 8 November 2017

A statistical strategy to identify recombinant viral ribonucleoprotein of avian, human, and swine influenza A viruses with elevated polymerase activity

scientific article

Bird to human transmission biases and vaccine escape mutants in H5N1 infections

scientific article

Chromatin dependencies in cancer and inflammation.

scientific article published on 29 November 2017

Dengue virus NS2B protein targets cGAS for degradation and prevents mitochondrial DNA sensing during infection.

scientific article published on 27 March 2017

Distinguishing the immunostimulatory properties of noncoding RNAs expressed in cancer cells.

scientific article

Diverse repetitive element RNA expression defines epigenetic and immunologic features of colon cancer

scientific article published on 09 February 2017

Evolution and diversity in human herpes simplex virus genomes

scientific article

FBXW7 regulates a mitochondrial transcription program by modulating MITF.

scientific article published on 17 April 2018

Fundamental amino acid mass distributions and entropy costs in proteomes

scientific article published on 17 August 2016

Getting the flu: 5 key facts about influenza virus evolution

scientific article

Global Cancer Transcriptome Quantifies Repeat Element Polarization between Immunotherapy Responsive and T Cell Suppressive Classes

scientific article published in April 2018

Host Dependent Evolutionary Patterns and the Origin of 2009 H1N1 Pandemic Influenza.

scientific article

Host-Protozoan Interactions Protect from Mucosal Infections through Activation of the Inflammasome.

scientific article

Identification of transcriptional programs using dense vector representations defined by mutual information with GeneVector

scientific article published on 20 July 2023

Identification of unique neoantigen qualities in long-term survivors of pancreatic cancer.

scientific article published on 8 November 2017

Influenza virus infection causes global RNAPII termination defects

Innate Immune Landscape in Early Lung Adenocarcinoma by Paired Single-Cell Analyses.

scientific article published in May 2017

Intrahost dynamics of antiviral resistance in influenza A virus reflect complex patterns of segment linkage, reassortment, and natural selection

scientific article published on 7 April 2015

Ion efflux and influenza infection trigger NLRP3 inflammasome signaling in human dendritic cells

scientific article published on 16 November 2015

Oligonucleotide motifs that disappear during the evolution of influenza virus in humans increase alpha interferon secretion by plasmacytoid dendritic cells.

scientific article

P53 and the defenses against genome instability caused by transposons and repetitive elements

scientific article published on 13 May 2016

Patient HLA class I genotype influences cancer response to checkpoint blockade immunotherapy

scientific article

Patterns of evolution and host gene mimicry in influenza and other RNA viruses

scientific article

Patterns of oligonucleotide sequences in viral and host cell RNA identify mediators of the host innate immune system

scientific article

Quantifying influenza virus diversity and transmission in humans

scientific article

Quantitative theory of entropic forces acting on constrained nucleotide sequences applied to viruses

scientific article published on 17 March 2014

Revelation of Influencing Factors in Overall Codon Usage Bias of Equine Influenza Viruses

scientific article

Semiclassics of the chaotic quantum-classical transition. ⬇️

scientific article published on 18 October 2007

Sequence-Specific Sensing of Nucleic Acids

scientific article published on 14 November 2016

Stage-Specific Human Induced Pluripotent Stem Cells Map the Progression of Myeloid Transformation to Transplantable Leukemia

scientific article published on 13 February 2017

Targeting Viral Proteostasis Limits Influenza Virus, HIV, and Dengue Virus Infection

scientific article published on January 2016

Targeting Viral Proteostasis Limits Influenza Virus, HIV, and Dengue Virus Infection

article

The Maintenance of Epigenetic States by p53: The Guardian of the Epigenome ⬇️

scientific article published on December 1, 2012

The heterogeneous landscape and early evolution of pathogen-associated CpG and UpA dinucleotides in SARS-CoV-2

scientific article published on 08 May 2020

The semiclassical regime of the chaotic quantum-classical transition

scientific article published in September 2005

Transcriptional dissection of melanoma identifies a high-risk subtype underlying TP53 family genes and epigenome deregulation

scientific article

Transmission Bottleneck Size Estimation from Pathogen Deep-Sequencing Data, with an Application to Human Influenza A Virus

scientific article

Unraveling predicted immunomodulatory effects of novel cancer-associated non-coding RNAs.

scientific article published on 4 November 2015

Using first passage statistics to extract environmentally dependent amino acid correlations

scientific article

Viral evolution: beyond drift and shift

scientific article published on 16 July 2015

Viral reassortment as an information exchange between viral segments

scientific article

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