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List of works by Mariusz Popenda

2-Methylwyosine, a nucleoside with restricted anti conformation in the east region enforced by nucleobase moiety modification: synthesis and conformational analysis by NMR and molecular dynamics

scientific article published on 01 January 2012

A new molecular mechanism of RNA circularization and the microRNA sponge formation

scientific article published on 17 November 2020

An assignment walk through 3D NMR spectrum

scientific article published in March 2009

An efficient route to novel 4,5-di- and 2,4,5-tri substituted imidazoles from imidazo[1,5-a]-1,3,5-triazine (5,8-diaza-7,9-dideazapurine) derivatives

scientific article published in January 2004

Automated 3D RNA structure prediction using the RNAComposer method for riboswitches

scientific article

Automated 3D structure composition for large RNAs

scientific article

ElTetrado: a tool for identification and classification of tetrads and quadruplexes

scientific article published on 31 January 2020

Entanglements of structure elements revealed in RNA 3D models

scientific article published on 27 September 2021

Flavan-3-ols from seeds ofLupinus angustifolius

scientific article published on 25 July 2002

Four coumarins isolated from seeds of Lupinus angustifolius

scientific article published in 2003

High salt solution structure of a left-handed RNA double helix

scientific article

High-throughput method for the prediction of low-resolution, three-dimensional RNA structures

scientific article published in January 2006

MCQ4Structures to compute similarity of molecule structures

scientific article published on 11 April 2013

New algorithms to represent complex pseudoknotted RNA structures in dot-bracket notation.

scientific article published on 11 December 2017

New functionality of RNAComposer: an application to shape the axis of miR160 precursor structure

scientific article published on 14 October 2016

New in silico approach to assessing RNA secondary structures with non-canonical base pairs

scientific article published on 2 September 2015

Prediction of hammerhead ribozyme intracellular activity with the catalytic core fingerprint

scientific article published in May 2013

RNA FRABASE 2.0: an advanced web-accessible database with the capacity to search the three-dimensional fragments within RNA structures

scientific article

RNA FRABASE version 1.0: an engine with a database to search for the three-dimensional fragments within RNA structures

scientific article published on 5 October 2007

RNA-Puzzles Round II: assessment of RNA structure prediction programs applied to three large RNA structures

scientific article published on 16 April 2015

RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme

scientific article

RNA-Puzzles Round IV: 3D structure predictions of four ribozymes and two aptamers

scientific article published on 05 May 2020

RNAfitme: a webserver for modeling nucleobase and nucleoside residue conformation in fixed-backbone RNA structures

scholarly article by Maciej Antczak published in August 2018

RNAlyzer--novel approach for quality analysis of RNA structural models

scientific article published on 25 April 2013

RNApdbee 2.0: multifunctional tool for RNA structure annotation.

scientific article published in July 2018

RNApdbee--a webserver to derive secondary structures from pdb files of knotted and unknotted RNAs

scientific article

RNAssess--a web server for quality assessment of RNA 3D structures

scientific article published on 11 June 2015

Spiegelzymes® mirror-image hammerhead ribozymes and mirror-image DNAzymes, an alternative to siRNAs and microRNAs to cleave mRNAs in vivo?

scientific article published on 29 January 2014

The model structure of the hammerhead ribozyme formed by RNAs of reciprocal chirality

scientific article published on 22 December 2020

The molecular dynamics thermocycler. A new approach to sample conformational space, as exemplified by the RNA hairpin

scientific article published on 01 January 2002

Topology-based classification of tetrads and quadruplex structures

scientific article published on 01 February 2020

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