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List of works by Karen H Miga

A draft human pangenome reference

scientific article published on 10 May 2023

Alpha-CENTAURI: assessing novel centromeric repeat sequence variation with long read sequencing

scientific article published on 24 February 2016

Alpha-satellite RNA transcripts are repressed by centromere-nucleolus associations

scientific article published on 11 November 2020

Centromere reference models for human chromosomes X and Y satellite arrays.

scientific article published on 05 February 2014

Centromere studies in the era of 'telomere-to-telomere' genomics

scientific article published on 03 June 2020

Centromeric Satellite DNAs: Hidden Sequence Variation in the Human Population

scientific article published on 08 May 2019

Chromosome-Specific Centromere Sequences Provide an Estimate of the Ancestral Chromosome 2 Fusion Event in Hominin Genomes

scientific article published on 16 July 2016

Completing the human genome: the progress and challenge of satellite DNA assembly

scientific article published on 12 September 2015

Curated variation benchmarks for challenging medically relevant autosomal genes

scientific article published in 2022

DNA replication acts as an error correction mechanism to maintain centromere identity by restricting CENP-A to centromeres

scientific article published on 03 June 2019

Genomic characterization of large heterochromatic gaps in the human genome assembly.

scientific article

Haplotype-aware variant calling with PEPPER-Margin-DeepVariant enables high accuracy in nanopore long-reads

scientific article published on 01 November 2021

Haplotypes spanning centromeric regions reveal persistence of large blocks of archaic DNA.

scientific article published on 25 June 2019

Heterochromatin-Encoded Satellite RNAs Induce Breast Cancer.

scientific article published on 31 May 2018

HiCanu: accurate assembly of segmental duplications, satellites, and allelic variants from high-fidelity long reads

scientific article published on 14 August 2020

Human Artificial Chromosomes that Bypass Centromeric DNA

scientific article published on 01 July 2019

Human centromeric CENP-A chromatin is a homotypic, octameric nucleosome at all cell cycle points

scientific article published on 24 February 2017

Human chromosome-specific aneuploidy is influenced by DNA-dependent centromeric features

scientific article published on 21 November 2019

Improved data analysis for the MinION nanopore sequencer

scientific article

Linear assembly of a human centromere on the Y chromosome

scientific article published on 19 March 2018

Nanopore sequencing and assembly of a human genome with ultra-long reads

article

Nanopore sequencing and assembly of a human genome with ultra-long reads.

scientific article published on 29 January 2018

Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes

scientific article published on 04 May 2020

Replication of alpha-satellite DNA arrays in endogenous human centromeric regions and in human artificial chromosome

scientific article

TandemTools: mapping long reads and assessing/improving assembly quality in extra-long tandem repeats

scientific article published on 01 July 2020

Telomere-to-telomere assembly of a complete human X chromosome

scientific article published on 14 July 2020

The Complete Sequence and Comparative Analysis of Ape Sex Chromosomes

preprint article published in December 2023

The Promises and Challenges of Genomic Studies of Human Centromeres

scientific article published on January 2017

The UCSC Genome Browser database: 2015 update

scientific article

The complete sequence and comparative analysis of ape sex chromosomes

scholarly article published in June 2024

The structure, function and evolution of a complete human chromosome 8

scientific article published on 07 April 2021

Utilizing mapping targets of sequences underrepresented in the reference assembly to reduce false positive alignments

scientific article published on 10 July 2015

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