List of works - John Ngai

Analysis of gene expression during neurite outgrowth and regeneration

scientific article

Analysis of gene expression in the developing mouse retina

scholarly article

Anosmia-A Clinical Review

scientific article

Cellular mechanisms of epithelial stem cell self-renewal and differentiation during homeostasis and repair

scientific article published on 29 August 2019

Combinatorial Expression of Grp and Neurod6 Defines Dopamine Neuron Populations with Distinct Projection Patterns and Disease Vulnerability

scientific article published on 01 May 2018

Complementary networks of cortical somatostatin interneurons enforce layer specific control

scientific article published on 18 March 2019

Creating Lineage Trajectory Maps Via Integration of Single-Cell RNA-Sequencing and Lineage Tracing: Integrating transgenic lineage tracing and single-cell RNA-sequencing is a robust approach for mapping developmental lineage trajectories and cell fat

scientific article published on 26 June 2018

Deconstructing Olfactory Stem Cell Trajectories at Single-Cell Resolution

scientific article

Early anti-oxidative and anti-proliferative curcumin effects on neuroglioma cells suggest therapeutic targets

scientific article

Foxg1 is required for development of the vertebrate olfactory system

scientific article published on May 2008

Functional genomic analysis of oligodendrocyte differentiation.

scientific article

High-potency olfactory receptor agonists discovered by virtual high-throughput screening: molecular probes for receptor structure and olfactory function

scientific article

Injury Activates Transient Olfactory Stem Cell States with Diverse Lineage Capacities

scientific article published on 17 November 2017

Intrinsic activity of odorant receptors guides sensory map formation

scientific article published on September 2013

Learned recognition of maternal signature odors mediates the first suckling episode in mice

scientific article

Molecular analysis of gene expression in the developing pontocerebellar projection system

scientific article published in October 2002

Molecular determinants of ligand selectivity in a vertebrate odorant receptor.

scientific article

Neuroscience: an extra dimension to olfaction.

scientific article published on 30 July 2006

Non-neural expression of SARS-CoV-2 entry genes in the olfactory epithelium suggests mechanisms underlying anosmia in COVID-19 patients

scientific article (preprint)

Non-neuronal expression of SARS-CoV-2 entry genes in the olfactory system suggests mechanisms underlying COVID-19-associated anosmia

scientific article published on 24 July 2020

Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation

scientific article

Normalization of RNA-seq data using factor analysis of control genes or samples

scientific article

Odorant receptor gene regulation: implications from genomic organization

scientific article

Odorant receptor specificities and receptor combinatorials: implications for olfactory coding

scientific article

Pax2 regulates a fadd-dependent molecular switch that drives tissue fusion during eye development

scientific article published on 21 February 2012

Pbx homeodomain proteins pattern both the zebrafish retina and tectum.

scientific article

Performance Assessment and Selection of Normalization Procedures for Single-Cell RNA-Seq

scientific article published on 01 April 2019

Perspectives on defining cell types in the brain

scientific article published on 06 December 2018

Role of IGF signaling in olfactory sensory map formation and axon guidance

scientific article

Role of a ubiquitously expressed receptor in the vertebrate olfactory system

scientific article published on September 2013

Scent of a stem cell

scientific article published on 01 June 2007

Science imitates art: the cloning of mice from olfactory sensory neurons

scientific article

Silencing of odorant receptor genes by G protein βγ signaling ensures the expression of one odorant receptor per olfactory sensory neuron.

scientific article

Slingshot: Cell lineage and pseudotime inference for single-cell transcriptomics

Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics.

scientific article published on 19 June 2018

Spatial patterns of gene expression in the olfactory bulb

scholarly article

The BRAIN Initiative Cell Census Consortium: Lessons Learned toward Generating a Comprehensive Brain Cell Atlas

scientific article published on November 2017

The Sp1-related transcription factors sp5 and sp5-like act downstream of Wnt/beta-catenin signaling in mesoderm and neuroectoderm patterning.

scientific article published on March 2005

The cell biology of smell ⬇️

scientific article published on November 1, 2010

The cellular basis of distinct thirst modalities

scientific article published on 14 October 2020

The molecular basis for water taste in Drosophila

scientific article published on 4 April 2010

The odorant receptor repertoire of teleost fish

scientific article

The promise of the BRAIN initiative: NIH strategies for understanding neural circuit function

scientific article published on 03 December 2020

The repertoire of olfactory C family G protein-coupled receptors in zebrafish: candidate chemosensory receptors for amino acids

scientific article published on 8 December 2006

Transcription factors expressed in olfactory bulb local progenitor cells revealed by genome-wide transcriptome profiling

scientific article

Transcriptome analysis of the zebrafish atoh7-/- Mutant, lakritz, highlights Atoh7-dependent genetic networks with potential implications for human eye diseases

scientific article published on 27 June 2020

Using microarrays to facilitate positional cloning: identification of tomosyn as an inhibitor of neurosecretion

scientific article

clusterExperiment and RSEC: A Bioconductor package and framework for clustering of single-cell and other large gene expression datasets

article

p63 regulates olfactory stem cell self-renewal and differentiation

scientific article published on December 2011

List of works by John Ngai

Analysis of gene expression during neurite outgrowth and regeneration

Analysis of gene expression in the developing mouse retina

Anosmia-A Clinical Review

Cellular mechanisms of epithelial stem cell self-renewal and differentiation during homeostasis and repair

Combinatorial Expression of Grp and Neurod6 Defines Dopamine Neuron Populations with Distinct Projection Patterns and Disease Vulnerability

Complementary networks of cortical somatostatin interneurons enforce layer specific control

Creating Lineage Trajectory Maps Via Integration of Single-Cell RNA-Sequencing and Lineage Tracing: Integrating transgenic lineage tracing and single-cell RNA-sequencing is a robust approach for mapping developmental lineage trajectories and cell fat

Deconstructing Olfactory Stem Cell Trajectories at Single-Cell Resolution

Early anti-oxidative and anti-proliferative curcumin effects on neuroglioma cells suggest therapeutic targets

Foxg1 is required for development of the vertebrate olfactory system

Functional genomic analysis of oligodendrocyte differentiation.

High-potency olfactory receptor agonists discovered by virtual high-throughput screening: molecular probes for receptor structure and olfactory function

Injury Activates Transient Olfactory Stem Cell States with Diverse Lineage Capacities

Intrinsic activity of odorant receptors guides sensory map formation

Learned recognition of maternal signature odors mediates the first suckling episode in mice

Molecular analysis of gene expression in the developing pontocerebellar projection system

Molecular determinants of ligand selectivity in a vertebrate odorant receptor.

Neuroscience: an extra dimension to olfaction.

Non-neural expression of SARS-CoV-2 entry genes in the olfactory epithelium suggests mechanisms underlying anosmia in COVID-19 patients

Non-neuronal expression of SARS-CoV-2 entry genes in the olfactory system suggests mechanisms underlying COVID-19-associated anosmia

Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation

Normalization of RNA-seq data using factor analysis of control genes or samples

Odorant receptor gene regulation: implications from genomic organization

Odorant receptor specificities and receptor combinatorials: implications for olfactory coding

Pax2 regulates a fadd-dependent molecular switch that drives tissue fusion during eye development

Pbx homeodomain proteins pattern both the zebrafish retina and tectum.

Performance Assessment and Selection of Normalization Procedures for Single-Cell RNA-Seq

Perspectives on defining cell types in the brain

Role of IGF signaling in olfactory sensory map formation and axon guidance

Role of a ubiquitously expressed receptor in the vertebrate olfactory system

Scent of a stem cell

Science imitates art: the cloning of mice from olfactory sensory neurons

Silencing of odorant receptor genes by G protein βγ signaling ensures the expression of one odorant receptor per olfactory sensory neuron.

Slingshot: Cell lineage and pseudotime inference for single-cell transcriptomics

Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics.

Spatial patterns of gene expression in the olfactory bulb

The BRAIN Initiative Cell Census Consortium: Lessons Learned toward Generating a Comprehensive Brain Cell Atlas

The Sp1-related transcription factors sp5 and sp5-like act downstream of Wnt/beta-catenin signaling in mesoderm and neuroectoderm patterning.

The cell biology of smell ⬇️

The cellular basis of distinct thirst modalities

The molecular basis for water taste in Drosophila

The odorant receptor repertoire of teleost fish

The promise of the BRAIN initiative: NIH strategies for understanding neural circuit function

The repertoire of olfactory C family G protein-coupled receptors in zebrafish: candidate chemosensory receptors for amino acids

Transcription factors expressed in olfactory bulb local progenitor cells revealed by genome-wide transcriptome profiling

Transcriptome analysis of the zebrafish atoh7-/- Mutant, lakritz, highlights Atoh7-dependent genetic networks with potential implications for human eye diseases

Using microarrays to facilitate positional cloning: identification of tomosyn as an inhibitor of neurosecretion

clusterExperiment and RSEC: A Bioconductor package and framework for clustering of single-cell and other large gene expression datasets

p63 regulates olfactory stem cell self-renewal and differentiation