Search filters

List of works by Fyodor Kondrashov

A common framework for understanding the origin of genetic dominance and evolutionary fates of gene duplications

scientific article published in July 2004

A manually curated database of tetrapod mitochondrially encoded tRNA sequences and secondary structures

scientific article

A model of substitution trajectories in sequence space and long-term protein evolution.

scientific article published on 17 November 2014

A structural perspective of compensatory evolution

scientific article

Acrocephalus orinus: a case of mistaken identity

scientific article published in 2011

An experimental assay of the interactions of amino acids from orthologous sequences shaping a complex fitness landscape

scientific article

Bioinformatical assay of human gene morbidity

scientific article published on 12 March 2004

Color differences among feral pigeons (Columba livia) are not attributable to sequence variation in the coding region of the melanocortin-1 receptor gene (MC1R)

scientific article

Compensatory evolution in mitochondrial tRNAs navigates valleys of low fitness

scientific article published on 24 February 2010

Complete mitochondrial genome and phylogeny of Pleistocene mammoth Mammuthus primigenius

scientific article

Conversion and compensatory evolution of the gamma-crystallin genes and identification of a cataractogenic mutation that reverses the sequence of the human CRYGD gene to an ancestral state

scientific article

Corrigendum: Duplication of a promiscuous transcription factor drives the emergence of a new regulatory network

scientific article published on 26 February 2015

Crossing-over in a hypervariable species preferentially occurs in regions of high local similarity

scientific article published on 18 August 2014

Dobzhansky-Muller incompatibilities in protein evolution

scientific article

Duplication of a promiscuous transcription factor drives the emergence of a new regulatory network

scientific article

Epistasis as the primary factor in molecular evolution

scientific article published on 14 October 2012

Estimating the Rate of Irreversibility in Protein Evolution ⬇️

scientific article published on January 1, 2012

Evolution of a behavior-linked microsatellite-containing element in the 5' flanking region of the primate AVPR1A gene

scientific article

Evolution of alternative splicing: deletions, insertions and origin of functional parts of proteins from intron sequences

scientific article

Evolution of glyoxylate cycle enzymes in Metazoa: evidence of multiple horizontal transfer events and pseudogene formation

scientific article

Evolution of the mouse polyubiquitin-C gene

scientific article

Extensive parallelism in protein evolution

scientific article

Footprints of primordial introns on the eukaryotic genome: still no clear traces ⬇️

scientific article published on 01 September 2001

Gene duplication as a mechanism of genomic adaptation to a changing environment ⬇️

scientific article published on September 12, 2012

Genetically encodable bioluminescent system from fungi

article published in the Proceedings of the National Academy of Sciences of the United States of America

Heterogeneity of the GFP fitness landscape and data-driven protein design

scientific article published on 05 May 2022

Hypermutable non-synonymous sites are under stronger negative selection

scientific article

Impact of selection, mutation rate and genetic drift on human genetic variation.

scientific article

Local fitness landscape of the green fluorescent protein

scientific article published on 11 May 2016

Long-term asymmetrical acceleration of protein evolution after gene duplication

scientific article published on 28 July 2014

Massively parallel enzyme kinetics reveals the substrate recognition landscape of the metalloprotease ADAMTS13.

scientific article published on 13 July 2015

Measurements of spontaneous rates of mutations in the recent past and the near future

scientific article published on April 2010

Mechanisms and convergence of compensatory evolution in mammalian mitochondrial tRNAs

scientific article published on 24 October 2004

Mitochondrial pathogenic mutations are population-specific

scientific article published on 31 December 2010

Negative selection in tumor genome evolution acts on essential cellular functions and the immunopeptidome.

scientific article published on 31 May 2018

Nested genes and increasing organizational complexity of metazoan genomes

scientific article

Origin of alternative splicing by tandem exon duplication ⬇️

scientific article published on November 1, 2001

Positive selection at sites of multiple amino acid replacements since rat–mouse divergence

scientific article published in Nature

Prediction of pathogenic mutations in mitochondrially encoded human tRNAs

scientific article

Presence of ATG triplets in 5′ untranslated regions of eukaryotic cDNAs correlates with a ‘weak’ context of the start codon ⬇️

scientific article published on October 1, 2001

Rate of sequence divergence under constant selection

scientific article

Recent Origin of the Methacrylate Redox System in Geobacter sulfurreducens AM-1 through Horizontal Gene Transfer

scientific article

Role of selection in fixation of gene duplications

scientific article

Saturation of recognition elements blocks evolution of new tRNA identities.

scientific article published on 29 April 2016

Selection for functional uniformity of tuf duplicates in gamma-proteobacteria

scientific article published on 23 March 2007

Selection for short introns in highly expressed genes

scientific article

Selection in favor of nucleotides G and C diversifies evolution rates and levels of polymorphism at mammalian synonymous sites

scientific article

Selection in the evolution of gene duplications

scientific article

Self-consistency test reveals systematic bias in programs for prediction change of stability upon mutation.

scientific article published on 2 May 2018

Sequence space and the ongoing expansion of the protein universe

scientific article

Signs of positive selection of somatic mutations in human cancers detected by EST sequence analysis

scientific article published on 9 February 2006

Stop codons in bacteria are not selectively equivalent

scientific article

The ctenophore genome and the evolutionary origins of neural systems

scientific article

The functional genomic distribution of protein divergence in two animal phyla: coevolution, genomic conflict, and constraint

scientific article published in May 2004

Topological features of rugged fitness landscapes in sequence space

scientific article

Translation termination in pyrrolysine-utilizing archaea

scientific article

Paulina is supported by:

About Paulina

Help